mRNA_H-elongata_contig106471.528.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106471.528.1
Unique NamemRNA_H-elongata_contig106471.528.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig106471.528.1 vs. uniprot
Match: A0A177TP70_9BASI (Uncharacterized protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TP70_9BASI)

HSP 1 Score: 57.8 bits (138), Expect = 4.580e-6
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:  145 DSGATEHITQDPAGLEDYTPAPAGDRVESAGGTLLPMAGYGHLRLLMDQGNGNFTDSMRQLTLKHVAHVPN-LGQHNLLSTKRLTQ 399
            D+G++ HI  DP+ L DY  A     +E A G L+P+AGYG+LR+    G         ++ LK VAH P+ +G  NL+  KRLT+
Sbjct:  754 DTGSSRHIVADPSSLTDYRNAAPETGIECANGGLMPVAGYGNLRVTTQAG--------LKIELKDVAHCPSAIG--NLIGGKRLTK 829
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BLAST of mRNA_H-elongata_contig106471.528.1 vs. uniprot
Match: A0A540NPQ2_MALBA (gag_pre-integrs domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NPQ2_MALBA)

HSP 1 Score: 54.7 bits (130), Expect = 2.630e-5
Identity = 47/170 (27.65%), Postives = 73/170 (42.94%), Query Frame = 1 
Query:  136 WANDSGATEHITQDPAGLEDYTPAPAGDRVESAGGTLLPMAGYGHLRLLMDQGNGNFTDSMRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDAPMRVYPAAALIRPRREGMPLFFRPLRPENGLLEIKVRRHVAAKSLLKPPTATALAATQRGPRDIMKFHQVLGHPAEQI 645
            W  DSGA+ H+T   A L++       ++V    G  LP         ++  G+ +   S     LKHV HVP L Q NL+S  +        M +YP    ++    G  LF  P+  ++G             S     ++ AL A  + P+ +  +HQ LGHP+ +I
Sbjct:   25 WIVDSGASSHMTNSYANLQNPEAYTGPEQVYIGDGKGLP---------ILHSGSSSLHTSTNSFALKHVLHVPALKQ-NLISANQFLLDNSCFMHLYPFHFTVKDLSSGRMLFKGPV--QHGFYPFH-------SSFSPANSSQALTAYVKAPQHL--WHQRLGHPSVKI 173
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BLAST of mRNA_H-elongata_contig106471.528.1 vs. uniprot
Match: A0A2P6P2V5_ROSCH (Uncharacterized protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P2V5_ROSCH)

HSP 1 Score: 52.4 bits (124), Expect = 3.210e-5
Identity = 34/100 (34.00%), Postives = 51/100 (51.00%), Query Frame = 1 
Query:  130 EFWANDSGATEHITQDPAGLEDYTPAPAGDRVESAGGTLLPMAGYGHLRLLMDQGNGNFTDSMRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDAPMRVYP 429
            + W  DSGAT+H+T +P+ +   TP      V +A G   P+ G G + L             + +TL  V  VP+L  HNLLS K++T+ F   + +YP
Sbjct:   21 DMWIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTLT------------KSITLDTVLLVPSLS-HNLLSVKQITKQFYCCVILYP 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106471.528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A177TP70_9BASI4.580e-640.70Uncharacterized protein n=1 Tax=Tilletia indica Ta... [more]
A0A540NPQ2_MALBA2.630e-527.65gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A2P6P2V5_ROSCH3.210e-534.00Uncharacterized protein n=1 Tax=Rosa chinensis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106471contigH-elongata_contig106471:194..871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Exons1
Model size678
Cds size678
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929595.365652-CDS-H-elongata_contig106471:193..8711622929595.365652-CDS-H-elongata_contig106471:193..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106471 194..871 +
1691679084.0077176-CDS-H-elongata_contig106471:193..8711691679084.0077176-CDS-H-elongata_contig106471:193..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106471 194..871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106471.528.1prot_H-elongata_contig106471.528.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106471 194..871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106471.528.1

>prot_H-elongata_contig106471.528.1 ID=prot_H-elongata_contig106471.528.1|Name=mRNA_H-elongata_contig106471.528.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp
ELCELYWHSRRRWPQTRRVCWKFARQPRGWIXXXXRPKERRGSEFWANDS
GATEHITQDPAGLEDYTPAPAGDRVESAGGTLLPMAGYGHLRLLMDQGNG
NFTDSMRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDAPMRVYPAAALIRP
RREGMPLFFRPLRPENGLLEIKVRRHVAAKSLLKPPTATALAATQRGPRD
IMKFHQVLGHPAEQITRNTAHMVGM*
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mRNA from alignment at H-elongata_contig106471:194..871+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106471.528.1 ID=mRNA_H-elongata_contig106471.528.1|Name=mRNA_H-elongata_contig106471.528.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=678bp|location=Sequence derived from alignment at H-elongata_contig106471:194..871+ (Himanthalia elongata Himel1 dioecious)
GAACTGTGCGAACTCTACTGGCACAGCAGACGGCGTTGGCCCCAAACACG
GCGGGTTTGCTGGAAATTTGCGCGGCAGCCGCGGGGCTGGATTGTNNNNN
NNNNNCGTCCGAAGGAACGGCGTGGGAGCGAGTTCTGGGCGAACGATAGC
GGTGCGACAGAACATATAACACAGGACCCGGCGGGTCTAGAGGATTACAC
CCCGGCACCCGCGGGGGATCGAGTGGAGAGCGCCGGCGGTACCCTCCTTC
CGATGGCGGGATATGGACATCTCCGCCTCCTGATGGATCAAGGCAACGGA
AACTTCACCGACTCGATGCGCCAGCTCACGCTAAAGCACGTCGCACATGT
GCCGAATCTTGGACAGCATAATCTTCTCTCTACAAAACGGCTGACGCAGT
TTTTCGACGCGCCGATGCGCGTTTACCCAGCGGCTGCATTGATCCGCCCC
CGGCGAGAGGGCATGCCACTCTTTTTCCGCCCACTTCGACCAGAAAACGG
CCTTTTGGAGATCAAAGTGCGCCGCCACGTCGCTGCGAAGAGCCTACTCA
AACCCCCAACAGCAACAGCGCTCGCGGCGACGCAGCGCGGCCCGCGGGAT
ATCATGAAGTTCCACCAGGTGCTGGGGCACCCGGCAGAGCAGATCACGCG
CAACACGGCCCATATGGTGGGCATGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig106471:194..871+

>mRNA_H-elongata_contig106471.528.1 ID=mRNA_H-elongata_contig106471.528.1|Name=mRNA_H-elongata_contig106471.528.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1356bp|location=Sequence derived from alignment at H-elongata_contig106471:194..871+ (Himanthalia elongata Himel1 dioecious)
GAACTGTGCGAACTCTACTGGCACAGCAGACGGCGTTGGCCCCAAACACG
GCGGGTTTGCTGGAAATTTGCGCGGCAGCCGCGGGGCTGGATTGTNNNNN
NNNNNCGTCCGAAGGAACGGCGTGGGAGCGAGTTCTGGGCGAACGATAGC
GGTGCGACAGAACATATAACACAGGACCCGGCGGGTCTAGAGGATTACAC
CCCGGCACCCGCGGGGGATCGAGTGGAGAGCGCCGGCGGTACCCTCCTTC
CGATGGCGGGATATGGACATCTCCGCCTCCTGATGGATCAAGGCAACGGA
AACTTCACCGACTCGATGCGCCAGCTCACGCTAAAGCACGTCGCACATGT
GCCGAATCTTGGACAGCATAATCTTCTCTCTACAAAACGGCTGACGCAGT
TTTTCGACGCGCCGATGCGCGTTTACCCAGCGGCTGCATTGATCCGCCCC
CGGCGAGAGGGCATGCCACTCTTTTTCCGCCCACTTCGACCAGAAAACGG
CCTTTTGGAGATCAAAGTGCGCCGCCACGTCGCTGCGAAGAGCCTACTCA
AACCCCCAACAGCAACAGCGCTCGCGGCGACGCAGCGCGGCCCGCGGGAT
ATCATGAAGTTCCACCAGGTGCTGGGGCACCCGGCAGAGCAGATCACGCG
CAACACGGCCCATATGGTGGGCATGTAAGAACTGTGCGAACTCTACTGGC
ACAGCAGACGGCGTTGGCCCCAAACACGGCGGGTTTGCTGGAAATTTGCG
CGGCAGCCGCGGGGCTGGATTGTNNNNNNNNNNCGTCCGAAGGAACGGCG
TGGGAGCGAGTTCTGGGCGAACGATAGCGGTGCGACAGAACATATAACAC
AGGACCCGGCGGGTCTAGAGGATTACACCCCGGCACCCGCGGGGGATCGA
GTGGAGAGCGCCGGCGGTACCCTCCTTCCGATGGCGGGATATGGACATCT
CCGCCTCCTGATGGATCAAGGCAACGGAAACTTCACCGACTCGATGCGCC
AGCTCACGCTAAAGCACGTCGCACATGTGCCGAATCTTGGACAGCATAAT
CTTCTCTCTACAAAACGGCTGACGCAGTTTTTCGACGCGCCGATGCGCGT
TTACCCAGCGGCTGCATTGATCCGCCCCCGGCGAGAGGGCATGCCACTCT
TTTTCCGCCCACTTCGACCAGAAAACGGCCTTTTGGAGATCAAAGTGCGC
CGCCACGTCGCTGCGAAGAGCCTACTCAAACCCCCAACAGCAACAGCGCT
CGCGGCGACGCAGCGCGGCCCGCGGGATATCATGAAGTTCCACCAGGTGC
TGGGGCACCCGGCAGAGCAGATCACGCGCAACACGGCCCATATGGTGGGC
ATGTAA
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