mRNA_H-elongata_contig106433.526.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106433.526.1
Unique NamemRNA_H-elongata_contig106433.526.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106433.526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106433contigH-elongata_contig106433:949..1439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size493
Cds size486
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929595.089709-UTR-H-elongata_contig106433:948..9531622929595.089709-UTR-H-elongata_contig106433:948..953Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106433 949..953 +
1691679083.848772-UTR-H-elongata_contig106433:948..9531691679083.848772-UTR-H-elongata_contig106433:948..953Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106433 949..953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929595.1108105-CDS-H-elongata_contig106433:953..14391622929595.1108105-CDS-H-elongata_contig106433:953..1439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106433 954..1439 +
1691679083.8563142-CDS-H-elongata_contig106433:953..14391691679083.8563142-CDS-H-elongata_contig106433:953..1439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106433 954..1439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106433.526.1prot_H-elongata_contig106433.526.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106433 954..1439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106433.526.1

>prot_H-elongata_contig106433.526.1 ID=prot_H-elongata_contig106433.526.1|Name=mRNA_H-elongata_contig106433.526.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
MKLHEASRGMEALPYPPGDDDAAADTSSSSEESREEWSVSDSSSGEEAFV
SPMPTDGALGCGSALRGTRESVECTLCSLGLDDALFNLDGEISDDGTSCL
TCDLPSLWAAATASSTAGASAHPGNRLSPCAAEQPSVAELEANFQRSDSG
GRSWVRRTVRQM
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mRNA from alignment at H-elongata_contig106433:949..1439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106433.526.1 ID=mRNA_H-elongata_contig106433.526.1|Name=mRNA_H-elongata_contig106433.526.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=491bp|location=Sequence derived from alignment at H-elongata_contig106433:949..1439+ (Himanthalia elongata Himel1 dioecious)
TGATAATGAAGCTGCACGAAGCATCTCGCGGTATGGAAGCCTTACCGTAC
CCACCGGGTGACGACGACGCGGCTGCAGACACCTCGTCGTCCTCCGAAGA
GTCGAGGGAAGAGTGGAGCGTGAGCGATAGCTCGTCTGGTGAAGAGGCGT
TTGTCTCGCCCATGCCCACAGACGGCGCCCTAGGGTGCGGTTCGGCCCTT
CGCGGCACCCGCGAAAGCGTGGAGTGCACCCTCTGCAGCTTAGGTCTCGA
CGACGCTCTGTTCAACCTGGACGGTGAGATCTCCGATGATGGCACGTCGT
GCCTGACCTGCGATCTCCCTAGCCTGTGGGCAGCCGCAACGGCGTCATCT
ACAGCCGGAGCGAGCGCTCACCCCGGTAACCGTTTGTCCCCGTGCGCGGC
AGAACAACCCAGCGTAGCCGAGCTAGAGGCAAACTTCCAGAGAAGCGACT
CCGGCGGAAGGTCGTGGGTTCGGCGAACCGTTCGCCAAATG
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Coding sequence (CDS) from alignment at H-elongata_contig106433:949..1439+

>mRNA_H-elongata_contig106433.526.1 ID=mRNA_H-elongata_contig106433.526.1|Name=mRNA_H-elongata_contig106433.526.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig106433:949..1439+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCTGCACGAAGCATCTCGCGGTATGGAAGCCTTACCGTACCCACC
GGGTGACGACGACGCGGCTGCAGACACCTCGTCGTCCTCCGAAGAGTCGA
GGGAAGAGTGGAGCGTGAGCGATAGCTCGTCTGGTGAAGAGGCGTTTGTC
TCGCCCATGCCCACAGACGGCGCCCTAGGGTGCGGTTCGGCCCTTCGCGG
CACCCGCGAAAGCGTGGAGTGCACCCTCTGCAGCTTAGGTCTCGACGACG
CTCTGTTCAACCTGGACGGTGAGATCTCCGATGATGGCACGTCGTGCCTG
ACCTGCGATCTCCCTAGCCTGTGGGCAGCCGCAACGGCGTCATCTACAGC
CGGAGCGAGCGCTCACCCCGGTAACCGTTTGTCCCCGTGCGCGGCAGAAC
AACCCAGCGTAGCCGAGCTAGAGGCAAACTTCCAGAGAAGCGACTCCGGC
GGAAGGTCGTGGGTTCGGCGAACCGTTCGCCAAATGATGAAGCTGCACGA
AGCATCTCGCGGTATGGAAGCCTTACCGTACCCACCGGGTGACGACGACG
CGGCTGCAGACACCTCGTCGTCCTCCGAAGAGTCGAGGGAAGAGTGGAGC
GTGAGCGATAGCTCGTCTGGTGAAGAGGCGTTTGTCTCGCCCATGCCCAC
AGACGGCGCCCTAGGGTGCGGTTCGGCCCTTCGCGGCACCCGCGAAAGCG
TGGAGTGCACCCTCTGCAGCTTAGGTCTCGACGACGCTCTGTTCAACCTG
GACGGTGAGATCTCCGATGATGGCACGTCGTGCCTGACCTGCGATCTCCC
TAGCCTGTGGGCAGCCGCAACGGCGTCATCTACAGCCGGAGCGAGCGCTC
ACCCCGGTAACCGTTTGTCCCCGTGCGCGGCAGAACAACCCAGCGTAGCC
GAGCTAGAGGCAAACTTCCAGAGAAGCGACTCCGGCGGAAGGTCGTGGGT
TCGGCGAACCGTTCGCCAAATG
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