mRNA_H-elongata_contig106391.522.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106391.522.1
Unique NamemRNA_H-elongata_contig106391.522.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig106391.522.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.080e-9
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    4 LSILAQDGGSAVVNGDSKTRLFEVSQGGELTLTELELTGGRAAEGGAI-LSYGDLTLDSCVFDEN 195
            LSI  +DG SA V G  +T++F VS  G LTLT+L L+GG AA GGAI  S   +TLD+C+F  N
Sbjct:   91 LSITGEDG-SAEVLGGGQTQMFYVSSSGGLTLTDLRLSGGSAASGGAIESSMASVTLDTCIFSSN 154
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BLAST of mRNA_H-elongata_contig106391.522.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 7.870e-9
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    4 LSILAQDGGSAVVNGDSKTRLFEVSQGGELTLTELELTGGRAAEGGAI-LSYGDLTLDSCVFDEN 195
            LSI  +D  SA V G  +TR+F VS  G LTLT+L L+GG AA GGAI  S   +TLD+CVF+ N
Sbjct:  120 LSITGEDD-SAEVLGGGQTRMFYVSSSGGLTLTDLRLSGGSAASGGAIESSMASVTLDTCVFNGN 183
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BLAST of mRNA_H-elongata_contig106391.522.1 vs. uniprot
Match: D7FRH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH2_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.400e-8
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    4 LSILAQDGGSAVVNGDSKTRLFEVSQGGELTLTELELTGGRAAEGGAI-LSYGDLTLDSCVFDEN 195
            LSI  +D  SA V G  +T++F VS  G LTLT+L+L+GG AA GGAI  S   +TLD+CVF+ N
Sbjct:   91 LSITGEDD-SAEVLGGGQTQMFYVSSSGGLTLTDLKLSGGNAASGGAIESSMASVTLDTCVFNGN 154
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BLAST of mRNA_H-elongata_contig106391.522.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.750e-8
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    4 LSILAQDGGSAVVNGDSKTRLFEVSQGGELTLTELELTGGRAAEGGAI-LSYGDLTLDSCVFDEN 195
            LSI  +D  SA V G  +TR+F VS  G LTLT+L+L+GG AA GGAI  S   + L+SCVFD N
Sbjct:   81 LSITGEDD-SAEVRGGGQTRMFYVSTLGGLTLTDLKLSGGSAASGGAIHSSMATVALNSCVFDGN 144
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BLAST of mRNA_H-elongata_contig106391.522.1 vs. uniprot
Match: A0A6H5JB86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB86_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 6.660e-8
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   22 DGGSAVVNGDSKTRLFEVSQGGELTLTELELTGGRAAEGGAIL-SYGDLTLDSCVFDEN 195
            +G SA V G  +T++F +S  G LTLT+L+L+GG AA GGA+  S   + L+SCVFD N
Sbjct:   99 EGDSAEVLGGGQTQMFYISSSGGLTLTDLKLSGGSAASGGAVYASAASVALNSCVFDGN 157
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BLAST of mRNA_H-elongata_contig106391.522.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.310e-7
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   31 SAVVNGDSKTRLFEVSQGGELTLTELELTGGRAAEGGAILS-YGDLTLDSCVFDEN 195
            +A V G  + R+F VS  G LTLT+L+L+GGRAA GGAI S    +TL+SC FD N
Sbjct:   90 TAGVRGGGQIRMFGVSPAGGLTLTDLKLSGGRAARGGAIRSSMAAVTLNSCAFDGN 145
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BLAST of mRNA_H-elongata_contig106391.522.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.800e-7
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:    4 LSILAQDGGSAVVNGDSKTRLFEVSQGGELTLTELELTGGRAAEGGAIL-SYGDLTLDSCVFDEN 195
            LSI  +D  SA V G  +T++F VS  G LTLT+L L+GG AA GGA+  S   + L++CVFD N
Sbjct:   94 LSITGEDD-SAEVLGGGQTQMFYVSSSGGLTLTDLRLSGGSAASGGAVYASAASVALNNCVFDGN 157
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BLAST of mRNA_H-elongata_contig106391.522.1 vs. uniprot
Match: A0A843D9B3_9EURY (Ig-like domain repeat protein n=1 Tax=Methanobrevibacter sp. TaxID=66852 RepID=A0A843D9B3_9EURY)

HSP 1 Score: 48.5 bits (114), Expect = 6.950e-5
Identity = 24/65 (36.92%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:    4 LSILAQDGGSAVVNGDSKTRLFE-VSQGGELTLTELELTGGRAAEGGAILSYGDLTLDSCVFDEN 195
            L+I+    G  +++G+++  + + +     +TL ++  T GR   G AI S GDLT+DSCVF+EN
Sbjct:  111 LTIVGAANGGTILDGENEVAIIKSIGADSFVTLKDITFTHGRTDMGSAIRSSGDLTIDSCVFEEN 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106391.522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JS31_9PHAE3.080e-953.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH0_ECTSI7.870e-955.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FRH2_ECTSI1.400e-853.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRH3_ECTSI2.750e-855.38Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JB86_9PHAE6.660e-850.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH4_ECTSI1.310e-755.36Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRG6_ECTSI1.800e-750.77Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
A0A843D9B3_9EURY6.950e-536.92Ig-like domain repeat protein n=1 Tax=Methanobrevi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106391contigH-elongata_contig106391:32..226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929594.82008-CDS-H-elongata_contig106391:31..2261622929594.82008-CDS-H-elongata_contig106391:31..226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106391 32..226 -
1691679083.784852-CDS-H-elongata_contig106391:31..2261691679083.784852-CDS-H-elongata_contig106391:31..226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106391 32..226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106391.522.1prot_H-elongata_contig106391.522.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106391 32..226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106391.522.1

>prot_H-elongata_contig106391.522.1 ID=prot_H-elongata_contig106391.522.1|Name=mRNA_H-elongata_contig106391.522.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
SLSILAQDGGSAVVNGDSKTRLFEVSQGGELTLTELELTGGRAAEGGAIL
SYGDLTLDSCVFDEN
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mRNA from alignment at H-elongata_contig106391:32..226-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106391.522.1 ID=mRNA_H-elongata_contig106391.522.1|Name=mRNA_H-elongata_contig106391.522.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig106391:32..226- (Himanthalia elongata Himel1 dioecious)
TCCCTCTCCATATTGGCGCAAGACGGAGGAAGCGCAGTTGTAAATGGAGA
TTCCAAGACCCGGCTCTTCGAGGTGTCTCAAGGAGGAGAGCTCACACTTA
CGGAGCTGGAGCTAACCGGGGGCCGCGCTGCAGAGGGCGGGGCGATTCTA
TCCTATGGAGATTTGACGCTTGATTCATGTGTATTCGATGAAAAC
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Coding sequence (CDS) from alignment at H-elongata_contig106391:32..226-

>mRNA_H-elongata_contig106391.522.1 ID=mRNA_H-elongata_contig106391.522.1|Name=mRNA_H-elongata_contig106391.522.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig106391:32..226- (Himanthalia elongata Himel1 dioecious)
TCCCTCTCCATATTGGCGCAAGACGGAGGAAGCGCAGTTGTAAATGGAGA
TTCCAAGACCCGGCTCTTCGAGGTGTCTCAAGGAGGAGAGCTCACACTTA
CGGAGCTGGAGCTAACCGGGGGCCGCGCTGCAGAGGGCGGGGCGATTCTA
TCCTATGGAGATTTGACGCTTGATTCATGTGTATTCGATGAAAACTCCCT
CTCCATATTGGCGCAAGACGGAGGAAGCGCAGTTGTAAATGGAGATTCCA
AGACCCGGCTCTTCGAGGTGTCTCAAGGAGGAGAGCTCACACTTACGGAG
CTGGAGCTAACCGGGGGCCGCGCTGCAGAGGGCGGGGCGATTCTATCCTA
TGGAGATTTGACGCTTGATTCATGTGTATTCGATGAAAAC
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