mRNA_H-elongata_contig106306.517.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106306.517.1
Unique NamemRNA_H-elongata_contig106306.517.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig106306.517.1 vs. uniprot
Match: D7FZK5_ECTSI (AP-3 complex subunit delta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK5_ECTSI)

HSP 1 Score: 367 bits (941), Expect = 9.230e-117
Identity = 181/188 (96.28%), Postives = 184/188 (97.87%), Query Frame = 1 
Query:    1 FHSAPQVRKLTYLQMLGYDMSWAAFYVVEVMTMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANIATPGLSRDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFERIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIK 564
            F  A  +RKLTYLQMLGYDMSWAAFYV+EVMTMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANIATPGLSRDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTF+RIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIK
Sbjct:   41 FIKAQAIRKLTYLQMLGYDMSWAAFYVIEVMTMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANIATPGLSRDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFDRIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIK 228
[Close]
BLAST of mRNA_H-elongata_contig106306.517.1 vs. uniprot
Match: A0A835Z6U0_9STRA (Clathrin/coatomer adaptor, adaptin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U0_9STRA)

HSP 1 Score: 296 bits (758), Expect = 6.560e-96
Identity = 144/188 (76.60%), Postives = 164/188 (87.23%), Query Frame = 1 
Query:    1 FHSAPQVRKLTYLQMLGYDMSWAAFYVVEVMTMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANIATPGLSRDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFERIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIK 564
            F  A  VRKLTYLQM+GYDMSWAAF V+EVMT  RF HKRVGYLAANQ FTE+T+V+LL TNHL+KEF S N YD+GLAINCLANIATP LSRDL+ D+  LL + + YVRKKALL MYKLFI YPQGLRL F+RI++RL+D+DS VVSCAVN+ICELADKNP+NYLA+AP+FFRLLTTSSNNWMLIK
Sbjct:   41 FIKAQAVRKLTYLQMIGYDMSWAAFSVIEVMTSARFGHKRVGYLAANQTFTEETDVILLTTNHLKKEFNSGNQYDIGLAINCLANIATPDLSRDLLGDVSALLTHQRSYVRKKALLVMYKLFINYPQGLRLCFDRIRDRLDDTDSGVVSCAVNIICELADKNPRNYLALAPRFFRLLTTSSNNWMLIK 228
[Close]
BLAST of mRNA_H-elongata_contig106306.517.1 vs. uniprot
Match: A0A397A277_9STRA (Adaptin_N domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A277_9STRA)

HSP 1 Score: 273 bits (698), Expect = 5.900e-88
Identity = 129/188 (68.62%), Postives = 160/188 (85.11%), Query Frame = 1 
Query:    1 FHSAPQVRKLTYLQMLGYDMSWAAFYVVEVMTMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANIATPGLSRDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFERIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIK 564
            F  +  +RKLTYL M GYDMSWAAF+ VEVM+  RFAHKR+GYLAA+Q FT++T+VVLLCTN  +KEF S N Y+VGLA+N +ANI T  L+RDL+ D++ L+ +HKPYVRKKA L +YKLF++YPQGLRL+F+R+KER+E+ D SVVSC+VNVICELA+K PKNY+ +APQFFRLLTTSSNNWMLIK
Sbjct:  145 FIKSQAIRKLTYLNMQGYDMSWAAFHTVEVMSYERFAHKRIGYLAASQSFTQNTDVVLLCTNLFKKEFGSVNEYEVGLALNAMANICTLDLARDLLGDILNLMNSHKPYVRKKATLILYKLFLRYPQGLRLSFDRLKERMEEPDVSVVSCSVNVICELANKKPKNYVGLAPQFFRLLTTSSNNWMLIK 332
[Close]
BLAST of mRNA_H-elongata_contig106306.517.1 vs. uniprot
Match: A0A397D649_9STRA (Adaptin_N domain-containing protein (Fragment) n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D649_9STRA)

HSP 1 Score: 273 bits (698), Expect = 1.610e-87
Identity = 129/188 (68.62%), Postives = 160/188 (85.11%), Query Frame = 1 
Query:    1 FHSAPQVRKLTYLQMLGYDMSWAAFYVVEVMTMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANIATPGLSRDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFERIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIK 564
            F  +  +RKLTYL M GYDMSWAAF+ VEVM+  RFAHKR+GYLAA+Q FT++T+VVLLCTN  +KEF S N Y+VGLA+N +ANI T  L+RDL+ D++ L+ +HKPYVRKKA L +YKLF++YPQGLRL+F+R+KER+E+ D SVVSC+VNVICELA+K PKNY+ +APQFFRLLTTSSNNWMLIK
Sbjct:   41 FIKSQAIRKLTYLNMQGYDMSWAAFHTVEVMSYERFAHKRIGYLAASQSFTQNTDVVLLCTNLFKKEFGSVNEYEVGLALNAMANICTLDLARDLLGDILNLMNSHKPYVRKKATLILYKLFLRYPQGLRLSFDRLKERMEEPDVSVVSCSVNVICELANKKPKNYVGLAPQFFRLLTTSSNNWMLIK 228
[Close]
BLAST of mRNA_H-elongata_contig106306.517.1 vs. uniprot
Match: A0A7S1FY82_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FY82_9STRA)

HSP 1 Score: 264 bits (675), Expect = 2.110e-87
Identity = 129/188 (68.62%), Postives = 156/188 (82.98%), Query Frame = 1 
Query:    1 FHSAPQVRKLTYLQMLGYDMSWAAFYVVEVMTMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANIATPGLSRDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFERIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIK 564
            F  A  +RKLT+LQM+GYDMSWA+F V+E+M+  RFAHKRVGYLAA Q FTEDT+V+LLCTN L+KE  S   Y+ GLA+NCL+NI T  L+RDL+SDL  L  +  PYVRKKA+L ++KLF+KYPQGLRLTF+RI++ L DSD SVVSCAVNVI EL+DKNPKNYL MAPQFF+LLT+S+NNW LIK
Sbjct:    8 FTKANALRKLTFLQMMGYDMSWASFPVIEIMSSTRFAHKRVGYLAATQGFTEDTDVILLCTNLLKKELLSTEVYEAGLAVNCLSNIVTEDLARDLLSDLTVLTQHSAPYVRKKAILGLFKLFMKYPQGLRLTFDRIQQCLNDSDPSVVSCAVNVITELSDKNPKNYLVMAPQFFQLLTSSTNNWTLIK 195
[Close]
BLAST of mRNA_H-elongata_contig106306.517.1 vs. uniprot
Match: A0A0P1A8R1_PLAHL (Ap-3 complex subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8R1_PLAHL)

HSP 1 Score: 271 bits (694), Expect = 2.470e-86
Identity = 132/188 (70.21%), Postives = 159/188 (84.57%), Query Frame = 1 
Query:    1 FHSAPQVRKLTYLQMLGYDMSWAAFYVVEVMTMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANIATPGLSRDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFERIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIK 564
            F  A  VRKLTYL MLGYDM WAAF+VVEVM+  RFAHKR+GY AA Q FT+ T+VVLLCTN L+KEF S + Y+VGLAIN LANI T  L+RDL+ D++ ++G+ KPYVRKKA L +YK+F++YPQGLRL+F+R+KER+E+ D +VVSCAVNVICELA+K PKNYL +APQFFRLLTTSSNNWMLIK
Sbjct:   41 FIKAQAVRKLTYLHMLGYDMCWAAFHVVEVMSYERFAHKRIGYNAACQSFTQSTDVVLLCTNLLKKEFGSTSEYEVGLAINVLANIVTTDLARDLLGDVLAMMGSPKPYVRKKATLVLYKMFLRYPQGLRLSFDRLKERMEEPDVTVVSCAVNVICELANKKPKNYLGLAPQFFRLLTTSSNNWMLIK 228
[Close]
BLAST of mRNA_H-elongata_contig106306.517.1 vs. uniprot
Match: F0YKL7_AURAN (Adaptin_N domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKL7_AURAN)

HSP 1 Score: 275 bits (702), Expect = 3.700e-86
Identity = 131/185 (70.81%), Postives = 159/185 (85.95%), Query Frame = 1 
Query:   10 APQVRKLTYLQMLGYDMSWAAFYVVEVMTMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANIATPGLSRDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFERIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIK 564
            A  VRKLTYLQM+GYD+SWA+F +VE M+  RFAHKR+GYLAA QCF+E T+VVLL TN L+KEF+S + Y+VGLA+NCLANI T  L+RDL+ D V L+ + KPYVRKKA+ +M+KLF+KYPQGLRLTFE++KERL D + +V SCAVNV+CELA+KNP NYL+MAPQFFRLLTTSSNNWMLIK
Sbjct:   35 AQAVRKLTYLQMMGYDVSWASFAIVETMSQARFAHKRIGYLAACQCFSESTDVVLLTTNLLKKEFQSTSQYEVGLAVNCLANIVTKDLARDLLQDSVLLMSHSKPYVRKKAVSSMFKLFVKYPQGLRLTFEKLKERLADGEPAVTSCAVNVVCELANKNPNNYLSMAPQFFRLLTTSSNNWMLIK 219
[Close]
BLAST of mRNA_H-elongata_contig106306.517.1 vs. uniprot
Match: A0A812VEC3_SYMMI (AP3D1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VEC3_SYMMI)

HSP 1 Score: 263 bits (671), Expect = 6.950e-86
Identity = 125/191 (65.45%), Postives = 160/191 (83.77%), Query Frame = 1 
Query:    1 FHSAPQVRKLTYLQMLGYDMSWAAFYVVEVMTMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQ---NPYDVGLAINCLANIATPGLSRDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFERIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIK 564
            F  A  VRKLTY+QM+GY++SWA+F ++EVM+  RF HKR+GYLAANQ FTE T++++L TN  +KEF +Q   N Y++GLA+NCLANIA   L+RD +SD+V LL + +PY+RKKA++ ++KL+IKYPQGLRLTF+ + E+L DSD SVVSCAVNVICELA KNPKNYL+MAP+FF+LLTTSSNNWMLIK
Sbjct:   51 FVKAEAVRKLTYIQMMGYNVSWASFSIMEVMSQARFEHKRIGYLAANQSFTESTDILMLTTNLFKKEFSAQSSRNHYEIGLAMNCLANIANKDLARDCMSDVVSLLDHSRPYIRKKAVICLFKLYIKYPQGLRLTFDSLMEKLNDSDGSVVSCAVNVICELARKNPKNYLSMAPKFFKLLTTSSNNWMLIK 241
[Close]
BLAST of mRNA_H-elongata_contig106306.517.1 vs. uniprot
Match: W7TQ06_9STRA (Ap-3 complex subunit delta-1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQ06_9STRA)

HSP 1 Score: 279 bits (713), Expect = 6.860e-85
Identity = 136/188 (72.34%), Postives = 165/188 (87.77%), Query Frame = 1 
Query:    1 FHSAPQVRKLTYLQMLGYDMSWAAFYVVEVMTMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANIATPGLSRDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFERIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIK 564
            F  A  VRKLTYLQM+GYDMSWA+F VVEVM+ PRFAHKR+G LAA Q FT+ T+VVLL TN L+KEF+S N Y+VGLAINCLANI T  L+RDLI D+V L+ + KPYVRKKA+L++YKL+++YPQ LRLTFER+K++L+D++S+VVSCAVNVICELA+KNP NYLA+AP+FFRLLTTSSNNWMLIK
Sbjct:   41 FVKAQAVRKLTYLQMMGYDMSWASFAVVEVMSSPRFAHKRIGCLAACQTFTDATDVVLLTTNLLKKEFQSPNQYEVGLAINCLANIVTRDLARDLIGDVVSLIAHSKPYVRKKAVLSLYKLYLRYPQALRLTFERLKDKLDDAESAVVSCAVNVICELANKNPTNYLALAPKFFRLLTTSSNNWMLIK 228
[Close]
BLAST of mRNA_H-elongata_contig106306.517.1 vs. uniprot
Match: A0A3R6XGB3_9STRA (Adaptin_N domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XGB3_9STRA)

HSP 1 Score: 273 bits (698), Expect = 2.490e-84
Identity = 129/188 (68.62%), Postives = 160/188 (85.11%), Query Frame = 1 
Query:    1 FHSAPQVRKLTYLQMLGYDMSWAAFYVVEVMTMPRFAHKRVGYLAANQCFTEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANIATPGLSRDLISDLVQLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFERIKERLEDSDSSVVSCAVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIK 564
            F  +  +RKLTYL M GYDMSWAAF+ VEVM+  RFAHKR+GYLAA+Q FT++T+VVLLCTN  +KEF S N Y+VGLA+N +ANI T  L+RDL+ D++ L+ +HKPYVRKKA L +YKLF++YPQGLRL+F+R+KER+E+ D SVVSC+VNVICELA+K PKNY+ +APQFFRLLTTSSNNWMLIK
Sbjct:  193 FIKSQAIRKLTYLNMQGYDMSWAAFHTVEVMSYERFAHKRIGYLAASQSFTQNTDVVLLCTNLFKKEFGSVNEYEVGLALNAMANICTLDLARDLLGDILNLMNSHKPYVRKKATLILYKLFLRYPQGLRLSFDRLKERMEEPDVSVVSCSVNVICELANKKPKNYVGLAPQFFRLLTTSSNNWMLIK 380
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106306.517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZK5_ECTSI9.230e-11796.28AP-3 complex subunit delta n=2 Tax=Ectocarpus TaxI... [more]
A0A835Z6U0_9STRA6.560e-9676.60Clathrin/coatomer adaptor, adaptin-like protein n=... [more]
A0A397A277_9STRA5.900e-8868.62Adaptin_N domain-containing protein n=3 Tax=Aphano... [more]
A0A397D649_9STRA1.610e-8768.62Adaptin_N domain-containing protein (Fragment) n=5... [more]
A0A7S1FY82_9STRA2.110e-8768.62Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A0P1A8R1_PLAHL2.470e-8670.21Ap-3 complex subunit n=1 Tax=Plasmopara halstedii ... [more]
F0YKL7_AURAN3.700e-8670.81Adaptin_N domain-containing protein (Fragment) n=1... [more]
A0A812VEC3_SYMMI6.950e-8665.45AP3D1 protein n=1 Tax=Symbiodinium microadriaticum... [more]
W7TQ06_9STRA6.860e-8572.34Ap-3 complex subunit delta-1 n=2 Tax=Nannochlorops... [more]
A0A3R6XGB3_9STRA2.490e-8468.62Adaptin_N domain-containing protein n=1 Tax=Aphano... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106306contigH-elongata_contig106306:179..1965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score369.0
Seed ortholog evalue1.3e-99
Seed eggNOG ortholog2880.D7FZK5
Preferred nameAP3D1
KEGG koko:K12396
KEGG Pathwayko04142,map04142
GOsGO:0000041,GO:0002376,GO:0002475,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005783,GO:0005794,GO:0005795,GO:0005798,GO:0005802,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006900,GO:0006903,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007220,GO:0007275,GO:0007568,GO:0008055,GO:0008057,GO:0008088,GO:0008089,GO:0008104,GO:0008150,GO:0008152,GO:0008333,GO:0008340,GO:0008565,GO:0009058,GO:0009605,GO:0009893,GO:0009987,GO:0010008,GO:0010256,GO:0010259,GO:0010468,GO:0010604,GO:0010628,GO:0010970,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016182,GO:0016192,GO:0016197,GO:0016482,GO:0018130,GO:0019222,GO:0019438,GO:0019538,GO:0019748,GO:0019882,GO:0019884,GO:0021700,GO:0022407,GO:0022409,GO:0030001,GO:0030117,GO:0030119,GO:0030123,GO:0030154,GO:0030155,GO:0030424,GO:0030705,GO:0031090,GO:0031410,GO:0031503,GO:0031982,GO:0031984,GO:0032438,GO:0032501,GO:0032502,GO:0032594,GO:0032879,GO:0032940,GO:0032991,GO:0033036,GO:0033059,GO:0033060,GO:0033267,GO:0033365,GO:0034613,GO:0035646,GO:0036465,GO:0036466,GO:0042440,GO:0042441,GO:0042592,GO:0042886,GO:0042995,GO:0043005,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043679,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0044550,GO:0045184,GO:0045202,GO:0045580,GO:0045582,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045785,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046634,GO:0046635,GO:0046637,GO:0046638,GO:0046903,GO:0046907,GO:0047496,GO:0048003,GO:0048007,GO:0048066,GO:0048069,GO:0048072,GO:0048193,GO:0048475,GO:0048489,GO:0048490,GO:0048499,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048753,GO:0048757,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0050931,GO:0051094,GO:0051136,GO:0051138,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051716,GO:0060255,GO:0060966,GO:0060967,GO:0060968,GO:0060969,GO:0061024,GO:0061088,GO:0061462,GO:0065007,GO:0065008,GO:0070142,GO:0070727,GO:0070838,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072384,GO:0072511,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0080171,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098830,GO:0098930,GO:0098943,GO:0099003,GO:0099111,GO:0099504,GO:0099514,GO:0099517,GO:0099518,GO:0099532,GO:0099632,GO:0099637,GO:0120025,GO:0120038,GO:0150034,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902105,GO:1902107,GO:1903037,GO:1903039,GO:1903706,GO:1903708,GO:1990019,GO:2000026
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1059@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size564
Cds size564
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106306.517.1prot_H-elongata_contig106306.517.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106306 179..1965 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929594.4411473-CDS-H-elongata_contig106306:178..3891622929594.4411473-CDS-H-elongata_contig106306:178..389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106306 179..389 -
1691679083.6626773-CDS-H-elongata_contig106306:178..3891691679083.6626773-CDS-H-elongata_contig106306:178..389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106306 179..389 -
1622929594.4664502-CDS-H-elongata_contig106306:833..9671622929594.4664502-CDS-H-elongata_contig106306:833..967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106306 834..967 -
1691679083.6729994-CDS-H-elongata_contig106306:833..9671691679083.6729994-CDS-H-elongata_contig106306:833..967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106306 834..967 -
1622929594.5124042-CDS-H-elongata_contig106306:1479..16111622929594.5124042-CDS-H-elongata_contig106306:1479..1611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106306 1480..1611 -
1691679083.6804538-CDS-H-elongata_contig106306:1479..16111691679083.6804538-CDS-H-elongata_contig106306:1479..1611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106306 1480..1611 -
1622929594.5363157-CDS-H-elongata_contig106306:1878..19651622929594.5363157-CDS-H-elongata_contig106306:1878..1965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106306 1879..1965 -
1691679083.6879644-CDS-H-elongata_contig106306:1878..19651691679083.6879644-CDS-H-elongata_contig106306:1878..1965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106306 1879..1965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106306.517.1

>prot_H-elongata_contig106306.517.1 ID=prot_H-elongata_contig106306.517.1|Name=mRNA_H-elongata_contig106306.517.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp
FHSAPQVRKLTYLQMLGYDMSWAAFYVVEVMTMPRFAHKRVGYLAANQCF
TEDTEVVLLCTNHLQKEFKSQNPYDVGLAINCLANIATPGLSRDLISDLV
QLLGNHKPYVRKKALLAMYKLFIKYPQGLRLTFERIKERLEDSDSSVVSC
AVNVICELADKNPKNYLAMAPQFFRLLTTSSNNWMLIK
back to top

mRNA from alignment at H-elongata_contig106306:179..1965-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106306.517.1 ID=mRNA_H-elongata_contig106306.517.1|Name=mRNA_H-elongata_contig106306.517.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1787bp|location=Sequence derived from alignment at H-elongata_contig106306:179..1965- (Himanthalia elongata Himel1 dioecious)
TTCCATTCCGCGCCACAGGTTCGCAAGCTGACGTACTTGCAGATGTTGGG
CTACGACATGAGCTGGGCGGCGTTTTACGTCGTGGAGGTAAATCAACGGC
CCTCCTCGCTTATCTCTACCAAAACGCTAAACTTCCCTCCAACTTACCAC
TTGCGAGGGCTGGGTGGGGTGCAGTACATAGACATTCACGTGCTATTTGG
CTCTAGCCAAAGCACACTGTGTGATCCGAAGTTCGCCCCCTTTTTATAGG
ATGTTATTTAAGTATCGGTACCTATATAGACCTTCGTCCTGTCCCCCCAA
TGCTATTTGCCTCGTCAGCATGCCACAGTAATTTTTGCATTCCATGCCCT
CCAGGTGATGACAATGCCGAGATTCGCGCACAAGCGTGTGGGGTACCTGG
CAGCCAACCAGTGCTTCACGGAGGACACGGAGGTGGTACTTCTGTGCACG
AACCACCTCCAAAAGGAATTCAAGTCGCAAAATCCCGTGCGTGTTTGTTG
TTCTGTGTAGCGAGTTCTTTCAGATTATTTTTGTATGTGTTTTTTTTCTG
TCGTGGAAACAGTAGTGGGGTGGTCAATAAGAGGGGGAGAGGGGCGGGGA
GGAGGGGGGTGGAGTCGTTACGGTTCATACTTGCGACATAATTTTTGTTA
TACAAGCTGTTTCGAGCGATTGCAACGGCCGGTGAGTCATGTCTCCGGCA
CCAAGCCATGAATCCCGACCGCTGCAAAGCCGAAAGGGAAAAACAACTTA
ACCGAAACGCTTATCGTGGTTCCGTGAGAGCGATGTCACCTCTTGTGCGC
CTAACCGGCACAAAGAAAACTAGCGAAGCGCACCATCCTGAGAAGCTCTC
TATGTGCGCTTCATGCGGACGTGTTTTTTTTTTACTTCTATGAAACGTCT
TCCTAGGCAAGGTGTATGGGCGCACGCGCGTGGTTTTTGACGTAACGTAC
GGTACCTTACCGGGCTGCTGCGCGCGCGCTCTTCCTCTTTTTATTCAGTA
TGATGTGGGGTTGGCCATAAACTGCCTGGCCAATATTGCAACTCCCGGGC
TGTCTCGCGACCTCATTAGCGACCTAGTGCAGCTCCTGGGGAACCATAAG
CCTTATGTGCGGAAGAAAGCGCTTCTCGCCATGTGAGTTAGGGGAGTCAT
TTATACCACCACTGGCAACCGCGATCGCTCTAATAAAGCTGTGTCACGCC
CCCGCCGACCATCGATCGATTCGCTCGTGATGTACACGTAGGACATACCG
CCAAGCAGGCGGATGGATTACCACCTTGGTTGGCGTTTTTACGGTTAGAG
AATTCTATACGATATGCGTAGAGAAAGAAGGGTGAGAGCGGTGGGCGCGA
GTAATTAGGATGAAGAAAATTAGTAAAATCTTGAAATCTTCTTTCATGTC
TCCAGCGCGTTGATCGAGACCCGCAAAAATGAGTTGAATCCAGGAATTCG
ATCGTTGCCGTGCCTCTTCTGTCTTGTCACAAAGGGGACAGACATACAAC
ACTTATGCGACATATTTAGTCTACTACCCTTTCAAGGACGCATACCAGCG
ATAAACGAATGAAACATGCGTGATAGGTACAAGCTCTTCATCAAGTACCC
CCAAGGTCTCCGGCTAACCTTCGAGCGGATAAAGGAGCGACTCGAGGACA
GCGACAGTAGCGTAGTGAGCTGTGCGGTCAACGTCATCTGCGAGCTGGCG
GACAAAAACCCGAAGAACTACCTCGCCATGGCGCCGCAGTTCTTCCGTCT
TCTCACCACGTCTTCGAACAACTGGATGCTTATCAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig106306:179..1965-

>mRNA_H-elongata_contig106306.517.1 ID=mRNA_H-elongata_contig106306.517.1|Name=mRNA_H-elongata_contig106306.517.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1128bp|location=Sequence derived from alignment at H-elongata_contig106306:179..1965- (Himanthalia elongata Himel1 dioecious)
TTCCATTCCGCGCCACAGGTTCGCAAGCTGACGTACTTGCAGATGTTGGG
CTACGACATGAGCTGGGCGGCGTTTTACGTCGTGGAGTTCCATTCCGCGC
CACAGGTTCGCAAGCTGACGTACTTGCAGATGTTGGGCTACGACATGAGC
TGGGCGGCGTTTTACGTCGTGGAGGTGATGACAATGCCGAGATTCGCGCA
CAAGCGTGTGGGGTACCTGGCAGCCAACCAGTGCTTCACGGAGGACACGG
AGGTGGTACTTCTGTGCACGAACCACCTCCAAAAGGAATTCAAGTCGCAA
AATCCCGTGATGACAATGCCGAGATTCGCGCACAAGCGTGTGGGGTACCT
GGCAGCCAACCAGTGCTTCACGGAGGACACGGAGGTGGTACTTCTGTGCA
CGAACCACCTCCAAAAGGAATTCAAGTCGCAAAATCCCTATGATGTGGGG
TTGGCCATAAACTGCCTGGCCAATATTGCAACTCCCGGGCTGTCTCGCGA
CCTCATTAGCGACCTAGTGCAGCTCCTGGGGAACCATAAGCCTTATGTGC
GGAAGAAAGCGCTTCTCGCCATTATGATGTGGGGTTGGCCATAAACTGCC
TGGCCAATATTGCAACTCCCGGGCTGTCTCGCGACCTCATTAGCGACCTA
GTGCAGCTCCTGGGGAACCATAAGCCTTATGTGCGGAAGAAAGCGCTTCT
CGCCATGTACAAGCTCTTCATCAAGTACCCCCAAGGTCTCCGGCTAACCT
TCGAGCGGATAAAGGAGCGACTCGAGGACAGCGACAGTAGCGTAGTGAGC
TGTGCGGTCAACGTCATCTGCGAGCTGGCGGACAAAAACCCGAAGAACTA
CCTCGCCATGGCGCCGCAGTTCTTCCGTCTTCTCACCACGTCTTCGAACA
ACTGGATGCTTATCAAGGTACAAGCTCTTCATCAAGTACCCCCAAGGTCT
CCGGCTAACCTTCGAGCGGATAAAGGAGCGACTCGAGGACAGCGACAGTA
GCGTAGTGAGCTGTGCGGTCAACGTCATCTGCGAGCTGGCGGACAAAAAC
CCGAAGAACTACCTCGCCATGGCGCCGCAGTTCTTCCGTCTTCTCACCAC
GTCTTCGAACAACTGGATGCTTATCAAG
back to top