mRNA_H-elongata_contig106303.516.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106303.516.1
Unique NamemRNA_H-elongata_contig106303.516.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig106303.516.1 vs. uniprot
Match: D7FLI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLI5_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 2.520e-29
Identity = 53/66 (80.30%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 VGRHTGPTEYDVPGVTYLTPADQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 198
            VG   GP EY+V GV YLTP DQE LPYRI  +LPWNHFGRKNIGYLYAVHHGA VIYDVDDDNAL
Sbjct:   58 VGDQNGPAEYNVEGVIYLTPQDQEQLPYRIVPLLPWNHFGRKNIGYLYAVHHGATVIYDVDDDNAL 123
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BLAST of mRNA_H-elongata_contig106303.516.1 vs. uniprot
Match: A0A6H5JQ39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ39_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 6.600e-28
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 VGRHTGPTEYDVPGVTYLTPADQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 198
            VG   GP EY V GV YLTP DQ+ALPYRI  +LPWNHFGRKN+GY+YA+ HGAKVIYDVDDDNAL
Sbjct:  111 VGDKNGPAEYHVTGVKYLTPGDQDALPYRITEILPWNHFGRKNVGYMYAIQHGAKVIYDVDDDNAL 176
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BLAST of mRNA_H-elongata_contig106303.516.1 vs. uniprot
Match: D8LCM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCM9_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 2.770e-26
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 VGRHTGPTEYDVPGVTYLTPADQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 198
            VG   GPTEY+V GV  LTP+DQEALPYRI  ++PWNH GRKNIGYLYA+HHGAKVIYDVDD + L
Sbjct:  121 VGDKDGPTEYNVVGVVLLTPSDQEALPYRITDLIPWNHVGRKNIGYLYAIHHGAKVIYDVDDAHVL 186
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BLAST of mRNA_H-elongata_contig106303.516.1 vs. uniprot
Match: W7TF50_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TF50_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.740e-22
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 VGRHTGPTEYDVPG--VTYLTPADQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 198
            VG    P  YD+P   + +L+P +QEALPY I  +L WNHFGRKNIG+LYA+HHGA++IYD DDDN L
Sbjct:    9 VGDKKSPPTYDIPSDNLVFLSPEEQEALPYHIIPLLRWNHFGRKNIGFLYAMHHGAEMIYDTDDDNIL 76
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BLAST of mRNA_H-elongata_contig106303.516.1 vs. uniprot
Match: A0A7S3YTT7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YTT7_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 4.670e-21
Identity = 45/76 (59.21%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:    1 VGRHTGPTEYDV---------PG-VTYLTPADQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 198
            VG   GP  YD+         PG V YLTP DQE LPY + + L WNHFGRKNIG+++A HHGAK+IYDVDDDN L
Sbjct:  195 VGDKKGPKSYDLGAMRNGTAYPGQVVYLTPEDQEKLPYALTNRLKWNHFGRKNIGFIFAAHHGAKMIYDVDDDNTL 270
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BLAST of mRNA_H-elongata_contig106303.516.1 vs. uniprot
Match: A0A7S3S1Z0_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3S1Z0_EMIHU)

HSP 1 Score: 92.0 bits (227), Expect = 1.190e-20
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    4 GRHTGPTEYDVPGVTYLTPADQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 198
            G   GP EY++ GV YLTPA QEALP+   + L WNHFGRKN+G+LYA+ HGA+ +YD DDDN L
Sbjct:  120 GDKKGPVEYNLSGVLYLTPAMQEALPFESKAELRWNHFGRKNLGFLYAIQHGARWVYDTDDDNEL 184
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BLAST of mRNA_H-elongata_contig106303.516.1 vs. uniprot
Match: W7SZI8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SZI8_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.320e-20
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:    1 VGRHTGPTEYDVPGVT--YLTPADQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 198
            VG    P+ YD+   T  YL+P +QEALPY+I  +L WNHFGRKNIG+LYA+HHGA+VIYD DDDN L
Sbjct:  136 VGDKKSPSTYDIQSDTLIYLSPEEQEALPYQIIPLLKWNHFGRKNIGFLYAMHHGAEVIYDTDDDNIL 203
[Close]
BLAST of mRNA_H-elongata_contig106303.516.1 vs. uniprot
Match: K8YW40_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YW40_NANGC)

HSP 1 Score: 91.7 bits (226), Expect = 4.580e-20
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 VGRHTGPTEYDVPG--VTYLTPADQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 198
            VG    P  YD+P   + +L+P +QEALPY I  +L WNHFGRKNIG+LYA+HHGA++IYD DDDN L
Sbjct:   22 VGDKKSPPTYDIPSDNLVFLSPEEQEALPYHIIPLLRWNHFGRKNIGFLYAMHHGAEMIYDTDDDNIL 89
[Close]
BLAST of mRNA_H-elongata_contig106303.516.1 vs. uniprot
Match: A0A4D9D524_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D524_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 8.760e-20
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 VGRHTGPTEYDVPGVT--YLTPADQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 198
            VG    P+ YD+   T  +L P +QEALPY +  +L WNHFGRKNIG+LYA+HHGA+VIYD DDDN L
Sbjct:    9 VGDQQSPSTYDIQSDTLIFLGPEEQEALPYHVIPLLKWNHFGRKNIGFLYAMHHGAEVIYDTDDDNIL 76
[Close]
BLAST of mRNA_H-elongata_contig106303.516.1 vs. uniprot
Match: UPI0014553AFF (probable glycosyltransferase STELLO2 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014553AFF)

HSP 1 Score: 90.1 bits (222), Expect = 1.140e-19
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 VGRHTGPTEYDVPGVTYLTPADQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 198
            V    GP   D+P + +LT A+Q+   YRI  ++PWNHF RKNIGY+YA+ HGAKVIYD DDDN L
Sbjct:  117 VADKKGPVSMDIPNIVHLTVAEQKNCRYRICQLIPWNHFSRKNIGYMYAIEHGAKVIYDTDDDNGL 182
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106303.516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLI5_ECTSI2.520e-2980.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JQ39_9PHAE6.600e-2875.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCM9_ECTSI2.770e-2674.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TF50_9STRA1.740e-2260.29Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S3YTT7_9EUKA4.670e-2159.21Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S3S1Z0_EMIHU1.190e-2061.54Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
W7SZI8_9STRA1.320e-2063.24Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
K8YW40_NANGC4.580e-2060.29Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A4D9D524_9STRA8.760e-2060.29Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
UPI0014553AFF1.140e-1957.58probable glycosyltransferase STELLO2 n=1 Tax=Aster... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106303contigH-elongata_contig106303:639..1569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue7e-24
Seed eggNOG ortholog2880.D7FLI5
GOsGO:0000271,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0006073,GO:0006109,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009664,GO:0009832,GO:0009889,GO:0009987,GO:0010383,GO:0010556,GO:0010675,GO:0010962,GO:0010981,GO:0012505,GO:0016043,GO:0016051,GO:0019222,GO:0030243,GO:0030244,GO:0030312,GO:0031323,GO:0031326,GO:0031410,GO:0031982,GO:0031984,GO:0032881,GO:0032885,GO:0032950,GO:0032951,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0050789,GO:0050794,GO:0051128,GO:0051273,GO:0051274,GO:0052324,GO:0052541,GO:0060255,GO:0065007,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098791,GO:1901576,GO:1903338,GO:2000112,GO:2001006,GO:2001009
EggNOG free text desc.plant-type cell wall cellulose biosynthetic process
EggNOG OGs28KU8@1,2QTAG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929594.3871067-CDS-H-elongata_contig106303:638..8031622929594.3871067-CDS-H-elongata_contig106303:638..803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106303 639..803 +
1691679083.6445053-CDS-H-elongata_contig106303:638..8031691679083.6445053-CDS-H-elongata_contig106303:638..803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106303 639..803 +
1622929594.4002311-CDS-H-elongata_contig106303:1536..15691622929594.4002311-CDS-H-elongata_contig106303:1536..1569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106303 1537..1569 +
1691679083.6544435-CDS-H-elongata_contig106303:1536..15691691679083.6544435-CDS-H-elongata_contig106303:1536..1569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106303 1537..1569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106303.516.1prot_H-elongata_contig106303.516.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106303 639..1569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106303.516.1

>prot_H-elongata_contig106303.516.1 ID=prot_H-elongata_contig106303.516.1|Name=mRNA_H-elongata_contig106303.516.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
VGRHTGPTEYDVPGVTYLTPADQEALPYRIGSMLPWNHFGRKNIGYLYAV
HHGAKVIYDVDDDNAL
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mRNA from alignment at H-elongata_contig106303:639..1569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106303.516.1 ID=mRNA_H-elongata_contig106303.516.1|Name=mRNA_H-elongata_contig106303.516.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=931bp|location=Sequence derived from alignment at H-elongata_contig106303:639..1569+ (Himanthalia elongata Himel1 dioecious)
GTCGGTCGACATACAGGTCCCACAGAATATGATGTGCCGGGAGTTACATA
CCTTACTCCGGCGGATCAGGAGGCACTGCCATATCGAATAGGAAGTATGC
TTCCTTGGAATCACTTCGGTCGAAAGAACATTGGCTACCTTTACGCCGTG
CATCACGGGGCGAAGGTTATGCGCTTGTCACGGACATACTCAATATATAA
CATCTAGCGCTAGATAATACTTTCTCCGTGTACGGCCTGAGTTAGTGAAA
ATATATGCAGCGCTATGACTATGACTATGACTATGACTATGACTATGACT
ATGACTGTTAGAGCAATCCAACGATAGGAGGGGGAGGGGCAAACTTGCTA
AAACACCCCCGGTTCGTAAAGGGGACGTGTTATTTTTTTTCACTTCGGGG
ACAAAACGTATCTACCCCCTGTTTTTGTTTTTGTTTTTTTTAACATATGG
ACTCATTCCAACCCCTTTAACATCCACACTTTCTTAGCACCGTGAGAGGT
CTAGTCTAGGGGACCAACTATCGTCAGGTTAGAGTGTTTATATTATTACC
TTTGAGCGCAAAGTCATCACACGTGATTCATCGTGCCCCCCCCTGTTTTA
TTTTTAAATATGATATGAACTCATTCAAAAGCGCTACGACCGGGGATGCG
GCGATTGAATCCCCGGAAGGGAAATAATTTGGACCCTCCCCTGCGAAAAG
TGGGGAAAATTATGTTGCGTCCCCTCCCCCCAATCTTTGGGTTGGTCCTT
AGCTACAAAGCAGAGGATATATGGCGGTATATCGATAATTTATATAATAA
GGAGTCTTTCGTCACGATCGTGTAAAGCTCGCACAACCATCCAGCCAGGT
AGTCCTCCCCACATCCGCCCTCGTTACTGTTTTCCACGTCTCACCCAGGT
GATATACGATGTAGATGATGACAACGCGCTC
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Coding sequence (CDS) from alignment at H-elongata_contig106303:639..1569+

>mRNA_H-elongata_contig106303.516.1 ID=mRNA_H-elongata_contig106303.516.1|Name=mRNA_H-elongata_contig106303.516.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig106303:639..1569+ (Himanthalia elongata Himel1 dioecious)
GTCGGTCGACATACAGGTCCCACAGAATATGATGTGCCGGGAGTTACATA
CCTTACTCCGGCGGATCAGGAGGCACTGCCATATCGAATAGGAAGTATGC
TTCCTTGGAATCACTTCGGTCGAAAGAACATTGGCTACCTTTACGCCGTG
CATCACGGGGCGAAGGTCGGTCGACATACAGGTCCCACAGAATATGATGT
GCCGGGAGTTACATACCTTACTCCGGCGGATCAGGAGGCACTGCCATATC
GAATAGGAAGTATGCTTCCTTGGAATCACTTCGGTCGAAAGAACATTGGC
TACCTTTACGCCGTGCATCACGGGGCGAAGGTGATATACGATGTAGATGA
TGACAACGCGCTCGTGATATACGATGTAGATGATGACAACGCGCTC
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