mRNA_H-elongata_contig106268.512.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106268.512.1
Unique NamemRNA_H-elongata_contig106268.512.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig106268.512.1 vs. uniprot
Match: D7G5U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U9_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.050e-33
Identity = 59/75 (78.67%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:   82 PSVDHKKLFRPNLIVEFSEDSPAFRRKVDALDRNVEGLRGHLQQLVMVARKYCGSGFAFCEHGRELAGILMNMRG 306
            P+VD K+LF PNL++EF EDSPAFRRKV+ LD NVEGLRG LQQLV VARKYCG+G AFCEHGRELAG+LMN RG
Sbjct:  273 PNVDQKELFLPNLVMEFGEDSPAFRRKVETLDSNVEGLRGQLQQLVAVARKYCGNGLAFCEHGRELAGVLMNPRG 347
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BLAST of mRNA_H-elongata_contig106268.512.1 vs. uniprot
Match: A0A6H5L2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J8_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 3.120e-25
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:  124 VEFSEDSPAFRRKVDALDRNVEGLRGHLQQLVMVARKYCGSGFAFCEHGRELAGILMNMRG 306
            +EF EDSPAFRRKV+ LD NVEGLRG LQQLV VARKYCG+G AFCEHGRELAG+LMN RG
Sbjct:    1 MEFGEDSPAFRRKVETLDSNVEGLRGQLQQLVAVARKYCGNGLAFCEHGRELAGVLMNPRG 61
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BLAST of mRNA_H-elongata_contig106268.512.1 vs. uniprot
Match: A0A835ZCL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCL2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.020e-21
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:   73 EQPPSVDHKKLFRPNLIVEFSEDSPAFRRKVDALDRNVEGLRGHLQQL----------------------VMVARKYCGSGFAFCEHGRELAGILMNMR 303
            ++P   D+K LF+PNLI+EF+EDSP+FRRKV+ LD+NV GLRGH QQL                      V +AR YC +G AFCEHGREL+  LM+++
Sbjct:  242 KEPMLSDYKSLFKPNLIIEFAEDSPSFRRKVETLDQNVIGLRGHQQQLXXXXXXXXXXXXXXXXXXXXXLVNIARAYCKAGNAFCEHGRELSSALMHLQ 340
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BLAST of mRNA_H-elongata_contig106268.512.1 vs. uniprot
Match: A0A4D9CVE4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVE4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.530e-13
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:  103 LFRPNLIVEFSEDSPAFRRKVDALDRNVEGLRGHLQQLVMVARKYCGSGFAFCEHGRELAGILMNMR 303
             F+  +++E+ EDSP+FRRK+ ALD NVEG+R HLQ+LV + +KY  +G AF   GR  A  LM+++
Sbjct:  295 FFQSTVVLEYEEDSPSFRRKLQALDENVEGMRKHLQRLVDIVQKYIEAGVAFSAVGRIFASELMHLQ 361
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BLAST of mRNA_H-elongata_contig106268.512.1 vs. uniprot
Match: D0N718_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N718_PHYIT)

HSP 1 Score: 51.6 bits (122), Expect = 2.320e-5
Identity = 22/66 (33.33%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  106 FRPNLIVEFSEDSPAFRRKVDALDRNVEGLRGHLQQLVMVARKYCGSGFAFCEHGRELAGILMNMR 303
            F  N+++++ EDSP FRR+++  + ++ GLR  L++LV  +++Y  +G  F +   ELA  L+  +
Sbjct:  476 FSKNVVLDYVEDSPMFRRQLEGFEESITGLRALLKELVAHSKEYAAAGKHFGQEETELADELIQRK 541
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BLAST of mRNA_H-elongata_contig106268.512.1 vs. uniprot
Match: A0A484EF15_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EF15_BRELC)

HSP 1 Score: 50.1 bits (118), Expect = 7.940e-5
Identity = 21/66 (31.82%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  106 FRPNLIVEFSEDSPAFRRKVDALDRNVEGLRGHLQQLVMVARKYCGSGFAFCEHGRELAGILMNMR 303
            F  N+++++ EDSP FRR++++ + ++ GLR  L+++V  +++Y  +G  F E    LA  L+  +
Sbjct:  128 FSKNVVLDYVEDSPMFRRQIESFEESITGLRALLKEIVAHSKEYTAAGKYFGEQETALAHELIQRK 193
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BLAST of mRNA_H-elongata_contig106268.512.1 vs. uniprot
Match: A0A024GAF6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GAF6_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 8.220e-5
Identity = 21/63 (33.33%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:  115 NLIVEFSEDSPAFRRKVDALDRNVEGLRGHLQQLVMVARKYCGSGFAFCEHGRELAGILMNMR 303
            N+I+++S+DSP FRR+++ L+ ++ GLR  L+++   A++Y   G  F E    +A  + N +
Sbjct: 1293 NIIIDYSDDSPNFRRQLEGLELSINGLRTLLKEIGSSAKEYVAMGLRFGESEAAIANEITNRK 1355
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106268.512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G5U9_ECTSI1.050e-3378.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2J8_9PHAE3.120e-2581.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZCL2_9STRA1.020e-2149.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CVE4_9STRA4.530e-1349.25Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
D0N718_PHYIT2.320e-533.33Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A484EF15_BRELC7.940e-531.82Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A024GAF6_9STRA8.220e-533.33Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106268contigH-elongata_contig106268:801..1673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106268.512.1prot_H-elongata_contig106268.512.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106268 808..1587 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929593.9995232-UTR-H-elongata_contig106268:800..8071622929593.9995232-UTR-H-elongata_contig106268:800..807Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106268 801..807 +
1691679083.5117896-UTR-H-elongata_contig106268:800..8071691679083.5117896-UTR-H-elongata_contig106268:800..807Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106268 801..807 +
1622929594.0465214-UTR-H-elongata_contig106268:1587..16731622929594.0465214-UTR-H-elongata_contig106268:1587..1673Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106268 1588..1673 +
1691679083.5342867-UTR-H-elongata_contig106268:1587..16731691679083.5342867-UTR-H-elongata_contig106268:1587..1673Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106268 1588..1673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929594.017316-CDS-H-elongata_contig106268:807..9901622929594.017316-CDS-H-elongata_contig106268:807..990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106268 808..990 +
1691679083.519295-CDS-H-elongata_contig106268:807..9901691679083.519295-CDS-H-elongata_contig106268:807..990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106268 808..990 +
1622929594.0322325-CDS-H-elongata_contig106268:1557..15871622929594.0322325-CDS-H-elongata_contig106268:1557..1587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106268 1558..1587 +
1691679083.5267694-CDS-H-elongata_contig106268:1557..15871691679083.5267694-CDS-H-elongata_contig106268:1557..1587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106268 1558..1587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106268.512.1

>prot_H-elongata_contig106268.512.1 ID=prot_H-elongata_contig106268.512.1|Name=mRNA_H-elongata_contig106268.512.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MPPSGTATAVWKVAGRPIPVPASSLRPWTTRSFSGPILSWSLARIVRRSE
GKLTLWTATLKDSEGTFSSW*
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mRNA from alignment at H-elongata_contig106268:801..1673+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106268.512.1 ID=mRNA_H-elongata_contig106268.512.1|Name=mRNA_H-elongata_contig106268.512.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=873bp|location=Sequence derived from alignment at H-elongata_contig106268:801..1673+ (Himanthalia elongata Himel1 dioecious)
TCTGAAAATGCCGCCGTCGGGGACGGCTACGGCGGTATGGAAGGTGGCGG
GTCGTCCGATACCGGTTCCTGCGAGCAGCCTCCGTCCGTGGACCACAAGA
AGCTTTTCCGGCCCAATCTTATCGTGGAGTTTAGCGAGGATAGTCCGGCG
TTCCGAAGGAAAGTTGACGCTTTGGACCGCAACGTTGAAGGTGAGCAGAG
GCGTTTTGAGTCGGTTTTCTCTCATTGGGAGGCGTGTATCGTCAACCGCG
TTTGGGACTTTCGAGTGTGAGTGTTTTTGTGTGCCGTAGCTTTTCATATT
ACAAGGTCAGATCTACCTACTTTTGGAATACACAATCCTAGACAAAGGTC
GAGAAAAAGTTCCACACGTAATGTTCTGTTAAAAAAAAAGATATGATACC
CCTAGGGTTATAGGGAGATTTTTTGTCAATATTTCGAAACGGCGACGCGT
AATGTAGTTTTAAAATCACCCCAAACTCACCAGATTAAGCCGTGTGTGGG
AGAATGAGCAGGCTGACGCGGGACAGGACGGCCGTAACCGTCAACCCCTG
TCCGTAAAACCAAATTCTCAGGCACTAACGGGGACAGAGGAAAATATTTT
TCCCTGTTCGGCTGGCCACAAGCAGGGAGCAACCATATCCAGTTGATACA
TCCCATAACATATATGTACTAGGTTATTTTGAGAATTCGATGTTTATTAA
AGAATAATAAACATGCTAAAACACACACACACGCACGGTCCCTTTGAAAC
AAACAAGGACTCCGAGGGCACCTTCAGCAGCTGGTGATGGTGGCACGAAA
GTATTGCGGAAGCGGTTTTGCGTTCTGCGAGCACGGGCGAGAGCTGGCCG
GCATCCTCATGAATATGCGAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig106268:801..1673+

>mRNA_H-elongata_contig106268.512.1 ID=mRNA_H-elongata_contig106268.512.1|Name=mRNA_H-elongata_contig106268.512.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig106268:801..1673+ (Himanthalia elongata Himel1 dioecious)
ATGCCGCCGTCGGGGACGGCTACGGCGGTATGGAAGGTGGCGGGTCGTCC
GATACCGGTTCCTGCGAGCAGCCTCCGTCCGTGGACCACAAGAAGCTTTT
CCGGCCCAATCTTATCGTGGAGTTTAGCGAGGATAGTCCGGCGTTCCGAA
GGAAAGTTGACGCTTTGGACCGCAACGTTGAAGATGCCGCCGTCGGGGAC
GGCTACGGCGGTATGGAAGGTGGCGGGTCGTCCGATACCGGTTCCTGCGA
GCAGCCTCCGTCCGTGGACCACAAGAAGCTTTTCCGGCCCAATCTTATCG
TGGAGTTTAGCGAGGATAGTCCGGCGTTCCGAAGGAAAGTTGACGCTTTG
GACCGCAACGTTGAAGGACTCCGAGGGCACCTTCAGCAGCTGGTGAGACT
CCGAGGGCACCTTCAGCAGCTGGTGA
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