mRNA_H-elongata_contig106256.511.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106256.511.1
Unique NamemRNA_H-elongata_contig106256.511.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106256.511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106256contigH-elongata_contig106256:37..1680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size429
Cds size222
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106256.511.1prot_H-elongata_contig106256.511.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106256 1132..1680 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929593.8428252-UTR-H-elongata_contig106256:36..1571622929593.8428252-UTR-H-elongata_contig106256:36..157Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106256 37..157 +
1691679083.4582224-UTR-H-elongata_contig106256:36..1571691679083.4582224-UTR-H-elongata_contig106256:36..157Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106256 37..157 +
1622929593.8811626-UTR-H-elongata_contig106256:452..5171622929593.8811626-UTR-H-elongata_contig106256:452..517Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106256 453..517 +
1691679083.4678252-UTR-H-elongata_contig106256:452..5171691679083.4678252-UTR-H-elongata_contig106256:452..517Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106256 453..517 +
1622929593.8998575-UTR-H-elongata_contig106256:1111..11311622929593.8998575-UTR-H-elongata_contig106256:1111..1131Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106256 1112..1131 +
1691679083.4771154-UTR-H-elongata_contig106256:1111..11311691679083.4771154-UTR-H-elongata_contig106256:1111..1131Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106256 1112..1131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929593.9187746-CDS-H-elongata_contig106256:1131..12071622929593.9187746-CDS-H-elongata_contig106256:1131..1207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106256 1132..1207 +
1691679083.4874098-CDS-H-elongata_contig106256:1131..12071691679083.4874098-CDS-H-elongata_contig106256:1131..1207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106256 1132..1207 +
1622929593.9385185-CDS-H-elongata_contig106256:1534..16801622929593.9385185-CDS-H-elongata_contig106256:1534..1680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106256 1535..1680 +
1691679083.5033662-CDS-H-elongata_contig106256:1534..16801691679083.5033662-CDS-H-elongata_contig106256:1534..1680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106256 1535..1680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106256.511.1

>prot_H-elongata_contig106256.511.1 ID=prot_H-elongata_contig106256.511.1|Name=mRNA_H-elongata_contig106256.511.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MNPSDVNLEDAKRELMPYLNDIPELFVPTTQDDGSECSDFGDQNGNHATP
TRARRGGEEHVSSACTTTGPLSVG
back to top

mRNA from alignment at H-elongata_contig106256:37..1680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106256.511.1 ID=mRNA_H-elongata_contig106256.511.1|Name=mRNA_H-elongata_contig106256.511.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1644bp|location=Sequence derived from alignment at H-elongata_contig106256:37..1680+ (Himanthalia elongata Himel1 dioecious)
AGTCTTTCATCCTTCGATCGAAGCCTATGCGAACTACTGCGGGACCCGTA
ACTGTAAAACAATGACCTGGCGCAACCTCACAGGGGACAGCGTTATCTTC
AAGGAGGCGTTCCGCGAGAGGGTATGTTCTATTGTATATTTGTTGTTTCT
CGCGATCATTGTTTCGCCATAAACTTAAAATAAATACTACGATGTTCGGA
GGGTCGGAATGAGTTCAAGGTTTTTTTAATAAAAAAGAAAGACGGGCAGC
AGACTCCTTCCTCGCGGTAGTTAGTTTCGAATGACGCATAAAAAAATAAC
AACCTCCATTATGCAATATTATATTCATTCCTAATCGGTCATTGATTTTC
GTATTCTTTTGTTCAACCCCCTCACACCCCCACACACATTTCTCTCTCCC
CCCGTCCGTTTCACACCACCAATAGGTGGTACCAACGGTTGTGGACATGA
CCCTGAAGATGGTCGGAAAGATTGACGCGGTCCCCGGGGGCCAATTTCTC
CCCGCACGTCAAATACTGGTTAAGGCTAAAGCCTTATTCGGTATACACGA
AAGCGAATGTCACGCGGAACCTAAACAAGCAAAGATGTGGACAGGGGGCC
ATGTGGAGGGAACCATCTGGAGAAATGGGTGAGGCACAAATTGAATTAAA
TGTACGATATCAATTTTCGAACCGTCAAGCGTTACGCCACATGACAGCTT
GGGGAAACCCGGCAAATAATAAGTGAATGAAAAAATAGTGGGATAGGTTG
ATATAAATATCTCGTTTTTTTGCATTGTGTCCTTTCTTCTACCTCCTACA
GTAATCCTTGCGCAAACAATGATGTGAATCTTAACTTTACGAATTCATAT
ATTCTATTAAATGTCCCTTTCATCATCCGTGACAGTCGACGCCGGAACCT
AAGAAACACTATCTCCGTCTCGACGTGCTTCGGTCATAGCTATAATATTA
TTCAAACCACTTCGACTATTAATTGTACTACACAACACAGTATTAAGAGA
AACCGCTTTCGTGTCTCTCAAAATCGAACAGATTGTGGGAAAGTCTCGCG
GTTGCCTTCACCGGCTCGGATGAACCCTACGCTTGTCTAAGAAGGATGAA
CCCTTCTGACGTCAACCTCGAAGACGCGAAGCGAGAGTTGATGCCATACT
TAAACGACATCCCGGAACTCTGTGAGTATTCAGAAACGATCAGTGTCCTT
TCGCAATTTAACGCATTGCTTAGTGCAACCGTCTCCGGACTGAAAACCTC
TTTTATCACACACCAATATAATAAACGTTGAGCCATATTTTGCGACCCCA
AGGCATCGAATACAATATGTCGCGAGACGAATTTCTCATGTTCAAATTAC
TAAGGCGAATATATAAATAACCGTCCTTAACCTCACTTACTTACATATCA
TAGGGCACTCGACTGAAAGTATTATTCTATTGAGAATTATATCACTTACA
CATGAATGTCGTCGACCTACTGCCTTTCCTGCAATGTTTATGTAACAGTT
GTGCCAACAACACAAGATGATGGCAGCGAGTGCTCAGATTTTGGGGATCA
AAATGGAAATCACGCCACCCCCACACGAGCGAGACGTGGAGGCGAAGAAC
ATGTATCGTCAGCTTGCACTACGACAGGACCGTTGTCTGTAGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig106256:37..1680+

>mRNA_H-elongata_contig106256.511.1 ID=mRNA_H-elongata_contig106256.511.1|Name=mRNA_H-elongata_contig106256.511.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig106256:37..1680+ (Himanthalia elongata Himel1 dioecious)
ATGAACCCTTCTGACGTCAACCTCGAAGACGCGAAGCGAGAGTTGATGCC
ATACTTAAACGACATCCCGGAACTCTATGAACCCTTCTGACGTCAACCTC
GAAGACGCGAAGCGAGAGTTGATGCCATACTTAAACGACATCCCGGAACT
CTTTGTGCCAACAACACAAGATGATGGCAGCGAGTGCTCAGATTTTGGGG
ATCAAAATGGAAATCACGCCACCCCCACACGAGCGAGACGTGGAGGCGAA
GAACATGTATCGTCAGCTTGCACTACGACAGGACCGTTGTCTGTAGGGTT
GTGCCAACAACACAAGATGATGGCAGCGAGTGCTCAGATTTTGGGGATCA
AAATGGAAATCACGCCACCCCCACACGAGCGAGACGTGGAGGCGAAGAAC
ATGTATCGTCAGCTTGCACTACGACAGGACCGTTGTCTGTAGGG
back to top