mRNA_H-elongata_contig10622.508.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10622.508.1
Unique NamemRNA_H-elongata_contig10622.508.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10622.508.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.770e-24
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 DVISAVAEFVSNDDYLFFASVRREWREAWRERPTATRAATAHTSVPQLLHSFACGLPKSSAICDELARTGNLHVLREARRNDNNCPWDSTTC 276
            D++S VAEFV ++ YLFFASV R WR+ W +RPT T+A TA TSVPQL  SF CGL +++A+C+ +A  G L +LR AR     C W+  TC
Sbjct:    8 DIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMG--CQWNENTC 97
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BLAST of mRNA_H-elongata_contig10622.508.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.440e-22
Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    1 DVISAVAEFVSNDDYLFFASVRREWREAWRERPTATRAATAHTSVPQLLHSFACGLPKSSAICDELARTGNLHVLREARRNDNNCPWDSTTC 276
            D++S V EFV ++ YLFFASV R WR+ W +RPT T+A TA TSV QL  SF CGL +++A+C+ +A  G L +LR AR     CPW+  TC
Sbjct:   10 DIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMG--CPWNENTC 99
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BLAST of mRNA_H-elongata_contig10622.508.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.670e-21
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:    4 VISAVAEFVSNDDYLFFASVRREWREAWRERPTATRAATAHTSVPQLLHSFACGLPKSSAICDELARTGNLHVLREARRNDNNCPWDSTTC 276
            ++S +AEFV ++ +LFFASV R WR+ W +RPT T+A TA TSVPQL  SF CGL +++A+C+ +A  G L +L+ AR     CPW+  TC
Sbjct:   27 LLSYLAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLQRARAMG--CPWNENTC 115
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BLAST of mRNA_H-elongata_contig10622.508.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 7.620e-20
Identity = 52/97 (53.61%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:    1 DVISAVAEFVSNDDYLFFASVRREWREAWRERPTATRAATAHTSVPQLLHSFACGL-PKSSAICDELARTGNLHVLREARRNDNNCPWDSTTCQQAA 288
            DVIS  +EFV +D +LFFASV R WR AWR RPT+TRA T  TS  QL HS  CGL P  +A+C  +A  G L +LR AR       WD  TC +AA
Sbjct:   10 DVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAARALG--FRWDKMTCWKAA 104
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BLAST of mRNA_H-elongata_contig10622.508.1 vs. uniprot
Match: D8LFW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW3_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 5.440e-19
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:    1 DVISAVAEFVSNDDYLFFASVRREWREAWRERPTATRAATAHTSVPQLLHSFACGLPKSSAICDELARTGNLHVLREARRNDNNCPWDSTTC 276
            D++  +A+FV ++ +LFFA V   WREAW  RPT+TRA T H +  QL  SF+CGL K + +C+ +A  G L VL+ AR  +  CPW  +TC
Sbjct:   38 DIVRCLADFVHDEQHLFFAGVSTLWREAWGRRPTSTRAITEHVTPSQLCWSFSCGLRKRAEVCEAIAGFGKLEVLKRAR--ELKCPWGRSTC 127
[Close]
BLAST of mRNA_H-elongata_contig10622.508.1 vs. uniprot
Match: D7FH78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH78_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 8.410e-11
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:    1 DVISAVAEFVSNDDYLFFASVRREWREAWRERPTATRAATAHTSVPQLLHSFACGLPKS-SAICDELARTGNLHVL 225
            +++  +A+FV ++ +LFFA V + WR AW +RPT T   T  T+  QL HSF CGLP++ + +C  LAR G L++L
Sbjct:  114 NILLCLAQFVPDNQFLFFAPVAKGWRAAW-QRPTITAHVTPDTTTSQLQHSFECGLPQNQTGLCAALARLGKLNLL 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10622.508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L0J7_9PHAE3.770e-2453.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI1.440e-2252.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0K8_9PHAE1.670e-2150.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDD9_ECTSI7.620e-2053.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LFW3_ECTSI5.440e-1946.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH78_ECTSI8.410e-1144.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10622contigH-elongata_contig10622:6881..8011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue6.4e-07
Seed eggNOG ortholog2880.D7FMP0
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size810
Cds size810
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929593.6006236-CDS-H-elongata_contig10622:6880..74461622929593.6006236-CDS-H-elongata_contig10622:6880..7446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10622 6881..7446 -
1691679083.3824337-CDS-H-elongata_contig10622:6880..74461691679083.3824337-CDS-H-elongata_contig10622:6880..7446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10622 6881..7446 -
1622929593.6278133-CDS-H-elongata_contig10622:7767..80111622929593.6278133-CDS-H-elongata_contig10622:7767..8011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10622 7768..8011 -
1691679083.3965013-CDS-H-elongata_contig10622:7767..80111691679083.3965013-CDS-H-elongata_contig10622:7767..8011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10622 7768..8011 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10622.508.1prot_H-elongata_contig10622.508.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10622 6881..8011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10622.508.1

>prot_H-elongata_contig10622.508.1 ID=prot_H-elongata_contig10622.508.1|Name=mRNA_H-elongata_contig10622.508.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=270bp
DVISAVAEFVSNDDYLFFASVRREWREAWRERPTATRAATAHTSVPQLLH
SFACGLPKSSAICDELARTGNLHVLREARRNDNNCPWDSTTCQQAAQGGH
LDVLKWAVMQGCRWDACTCAGAARGGHLDILRWARENHCSWDWTTCRAAA
AQGRLDILMYAREHGCPWNSHSCYEAAKAGHLHVLEWAKDNACPWSPTTC
SGAAEGGHFDILKWARARGCAWDERTCEMAAMNGRLDILRWARENGCPWS
GWKCYFAAEANNQRHVVEWI
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mRNA from alignment at H-elongata_contig10622:6881..8011-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10622.508.1 ID=mRNA_H-elongata_contig10622.508.1|Name=mRNA_H-elongata_contig10622.508.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1131bp|location=Sequence derived from alignment at H-elongata_contig10622:6881..8011- (Himanthalia elongata Himel1 dioecious)
GACGTCATCAGTGCGGTTGCCGAGTTCGTCTCAAACGATGATTACCTTTT
CTTCGCTTCGGTGCGGAGGGAATGGAGGGAGGCGTGGCGGGAGCGACCAA
CGGCTACGCGGGCGGCTACGGCCCACACGTCGGTGCCTCAGCTGCTCCAC
AGCTTTGCGTGCGGCCTGCCGAAAAGCAGTGCGATTTGCGATGAGCTCGC
GCGGACCGGGAACTTGCACGTGCTCAGGGAAGCGCGACGGAACGGTTGCC
GCTTAGCTCGCTCTTCCCTCACCAAGGCCGCTGAAAGCGGTCAACTTCAC
GTACTCCGATGGGCGCTAAGGAAAGGTTTTTTGGAGAATCATGCCGATCT
GTGTTCGGCGGCGGGTGCGGGGGGACAGCTCCCTGTGCTGCAGTGGTTGA
AGAAACATGGCTACGCGTGGAATTGGCATACTTGCCGCAAGGCGGCTGAA
GGCGGGCACCTCGGGGTCCTGATGTGGGCACGGGCCAACGGTTGTCCCTG
GAATTGTCAAACGACGGCGAGTGCTGCCGGAGGGGGTTACTTGGACGTCC
TCATGTGGCTACGAGATAACAACTGCCCCTGGGACTCTACAACCTGTCAA
CAGGCGGCTCAAGGTGGGCACTTGGACGTCTTGAAGTGGGCAGTTATGCA
AGGTTGTCGCTGGGATGCTTGCACGTGTGCAGGGGCTGCCCGAGGCGGAC
ACCTTGATATCCTCCGATGGGCAAGGGAAAACCACTGCTCTTGGGACTGG
ACCACTTGCCGAGCGGCGGCGGCGCAAGGCAGGCTGGACATCCTCATGTA
TGCTCGAGAGCATGGGTGCCCTTGGAACTCGCACTCTTGCTACGAAGCGG
CGAAAGCAGGGCACCTTCACGTGCTGGAGTGGGCGAAGGACAACGCATGC
CCCTGGTCGCCTACAACCTGCAGCGGGGCAGCCGAGGGGGGGCATTTCGA
TATACTGAAATGGGCGCGGGCGCGTGGATGTGCCTGGGACGAACGCACGT
GCGAGATGGCGGCGATGAACGGTCGCCTCGACATACTCAGATGGGCTCGA
GAGAACGGGTGTCCGTGGTCTGGCTGGAAGTGCTACTTCGCCGCCGAGGC
GAATAATCAACGTCATGTGGTCGAATGGATT
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Coding sequence (CDS) from alignment at H-elongata_contig10622:6881..8011-

>mRNA_H-elongata_contig10622.508.1 ID=mRNA_H-elongata_contig10622.508.1|Name=mRNA_H-elongata_contig10622.508.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1620bp|location=Sequence derived from alignment at H-elongata_contig10622:6881..8011- (Himanthalia elongata Himel1 dioecious)
GACGTCATCAGTGCGGTTGCCGAGTTCGTCTCAAACGATGATTACCTTTT
CTTCGCTTCGGTGCGGAGGGAATGGAGGGAGGCGTGGCGGGAGCGACCAA
CGGCTACGCGGGCGGCTACGGCCCACACGTCGGTGCCTCAGCTGCTCCAC
AGCTTTGCGTGCGGCCTGCCGAAAAGCAGTGCGATTTGCGATGAGCTCGC
GCGGACCGGGAACTTGCACGTGCTCAGGGAAGCGCGACGGAACGGACGTC
ATCAGTGCGGTTGCCGAGTTCGTCTCAAACGATGATTACCTTTTCTTCGC
TTCGGTGCGGAGGGAATGGAGGGAGGCGTGGCGGGAGCGACCAACGGCTA
CGCGGGCGGCTACGGCCCACACGTCGGTGCCTCAGCTGCTCCACAGCTTT
GCGTGCGGCCTGCCGAAAAGCAGTGCGATTTGCGATGAGCTCGCGCGGAC
CGGGAACTTGCACGTGCTCAGGGAAGCGCGACGGAACGATAACAACTGCC
CCTGGGACTCTACAACCTGTCAACAGGCGGCTCAAGGTGGGCACTTGGAC
GTCTTGAAGTGGGCAGTTATGCAAGGTTGTCGCTGGGATGCTTGCACGTG
TGCAGGGGCTGCCCGAGGCGGACACCTTGATATCCTCCGATGGGCAAGGG
AAAACCACTGCTCTTGGGACTGGACCACTTGCCGAGCGGCGGCGGCGCAA
GGCAGGCTGGACATCCTCATGTATGCTCGAGAGCATGGGTGCCCTTGGAA
CTCGCACTCTTGCTACGAAGCGGCGAAAGCAGGGCACCTTCACGTGCTGG
AGTGGGCGAAGGACAACGCATGCCCCTGGTCGCCTACAACCTGCAGCGGG
GCAGCCGAGGGGGGGCATTTCGATATACTGAAATGGGCGCGGGCGCGTGG
ATGTGCCTGGGACGAACGCACGTGCGAGATGGCGGCGATGAACGGTCGCC
TCGACATACTCAGATGGGCTCGAGAGAACGGGTGTCCGTGGTCTGGCTGG
AAGTGCTACTTCGCCGCCGAGGCGAATAATCAACGTCATGTGGTCGAATG
GATTATAACAACTGCCCCTGGGACTCTACAACCTGTCAACAGGCGGCTCA
AGGTGGGCACTTGGACGTCTTGAAGTGGGCAGTTATGCAAGGTTGTCGCT
GGGATGCTTGCACGTGTGCAGGGGCTGCCCGAGGCGGACACCTTGATATC
CTCCGATGGGCAAGGGAAAACCACTGCTCTTGGGACTGGACCACTTGCCG
AGCGGCGGCGGCGCAAGGCAGGCTGGACATCCTCATGTATGCTCGAGAGC
ATGGGTGCCCTTGGAACTCGCACTCTTGCTACGAAGCGGCGAAAGCAGGG
CACCTTCACGTGCTGGAGTGGGCGAAGGACAACGCATGCCCCTGGTCGCC
TACAACCTGCAGCGGGGCAGCCGAGGGGGGGCATTTCGATATACTGAAAT
GGGCGCGGGCGCGTGGATGTGCCTGGGACGAACGCACGTGCGAGATGGCG
GCGATGAACGGTCGCCTCGACATACTCAGATGGGCTCGAGAGAACGGGTG
TCCGTGGTCTGGCTGGAAGTGCTACTTCGCCGCCGAGGCGAATAATCAAC
GTCATGTGGTCGAATGGATT
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