mRNA_H-elongata_contig1062.501.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1062.501.1
Unique NamemRNA_H-elongata_contig1062.501.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.510e-9
Identity = 36/91 (39.56%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    4 APAYDEFDDKIFPI-VTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
            AP  D  D     I V ++ +S YGL Q+  + + TI E LV I F+  +SDPC+YI      + ILTLYV+ +L+ GKD  ++  +K+ L
Sbjct:  508 APGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKEL 598          
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A7D9H832_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9H832_PARCT)

HSP 1 Score: 55.1 bits (131), Expect = 6.910e-7
Identity = 29/77 (37.66%), Postives = 44/77 (57.14%), Query Frame = 1
Query:   43 IVTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
            +V R+ +S YGL Q+     S +   L  + F  +  DPC+Y+K E G I I+ +YVD +LL GK+   +  +KQ L
Sbjct:   97 LVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQITGDPCIYVKEEGGEIFIIAVYVDDILLAGKNDQKIIEVKQAL 173          
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 55.1 bits (131), Expect = 9.540e-7
Identity = 29/77 (37.66%), Postives = 43/77 (55.84%), Query Frame = 1
Query:   43 IVTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
            +V R+ +S YGL Q+     S +   L  + F     DPC+Y+K E G I I+ +YVD +LL GK+   +  +KQ L
Sbjct:  123 LVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYVKEEGGEIFIIAVYVDDILLAGKNDQKINEVKQAL 199          
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A512UFU4_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Metschnikowia sp. JCM 33374 TaxID=2562755 RepID=A0A512UFU4_9ASCO)

HSP 1 Score: 55.1 bits (131), Expect = 9.890e-7
Identity = 28/74 (37.84%), Postives = 44/74 (59.46%), Query Frame = 1
Query:   52 RILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
            ++ KS YGL Q   +   TI   L++  FK+  ++PCLY K     + +L LYVD +L+ GKD + +  +KQ+L
Sbjct: 1327 KLNKSLYGLKQAPLVWNQTIDAALIKFGFKANVNEPCLYFKGSGSSLIVLALYVDDMLIFGKDESEISKVKQSL 1400          
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A6H5KRT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT7_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.190e-6
Identity = 26/77 (33.77%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   43 IVTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
            +V ++ +S YGL Q+  +   T+ + L    +K  +SDPC+Y+ +   +I ILT+YVD +L+ G+D  ++   K+ L
Sbjct:    1 MVYKLERSLYGLSQSPALWSDTLDKSLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGRDQQLVDQKKKEL 77          
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.310e-6
Identity = 29/77 (37.66%), Postives = 48/77 (62.34%), Query Frame = 1
Query:   43 IVTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
            IV ++ +S YG  Q+  + + T+ + LV I F+   + PC++I    G + ILTLYVD +L+ GKD  ++ G+K+ L
Sbjct:  573 IVYKLERSHYGRSQSPVLWFDTMGDVLVVIGFRP--THPCVFIYGSGGTLVILTLYVDDILISGKDPELVAGLKKEL 647          
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A6S7HUF2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HUF2_PARCT)

HSP 1 Score: 53.9 bits (128), Expect = 2.200e-6
Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 1
Query:   43 IVTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
            +V R+ +S Y L Q+     S +   L  + F     DPC+YIK E G I I+ +YVD +LL GK+   +  +KQ L
Sbjct:  102 LVCRLRRSIYDLKQSPCCWNSVLDRKLKNMGFVQTTDDPCIYIKEEGGEIFIIAMYVDDILLAGKNGQKINEVKQAL 178          
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A6S7IKL3_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IKL3_PARCT)

HSP 1 Score: 53.5 bits (127), Expect = 3.360e-6
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 1
Query:   43 IVTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
            +V R+ +S YGL ++     S +   L  + F     DPC+Y+K E G I I+ +YVD +LL GK+   +  +KQ L
Sbjct:  653 LVCRLRRSIYGLKKSPRCWNSVLDRKLKNMGFVQTTGDPCIYVKEEGGEIFIIAVYVDDILLAGKNDQKINEVKQAL 729          
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT)

HSP 1 Score: 51.6 bits (122), Expect = 1.580e-5
Identity = 28/77 (36.36%), Postives = 42/77 (54.55%), Query Frame = 1
Query:   43 IVTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
            +V R+ +S  GL Q+     S +   L  + F     DPC+Y+K E G I I+ +YVD +LL GK+   +  +KQ L
Sbjct:  271 LVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYVKEEGGEIFIIAVYVDDILLAGKNDQKINEVKQAL 347          
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Match: A0A512UHB7_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Metschnikowia sp. JCM 33374 TaxID=2562755 RepID=A0A512UHB7_9ASCO)

HSP 1 Score: 51.2 bits (121), Expect = 2.240e-5
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   46 VTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLKSDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTL 273
            V R+ KS YGL Q   +   T++  L +  FK   ++PCLY K +   + ++ LYVD +L+ GKD   +  +K+ L
Sbjct: 1295 VLRLNKSLYGLKQAPLVWNKTMNAELEKQGFKGAVNEPCLYYKGQGSSLIVIALYVDDLLIFGKDETEILRVKRDL 1370          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1062.501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5K9R3_9PHAE3.510e-939.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A7D9H832_PARCT6.910e-737.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9KES8_PARCT9.540e-737.66Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A512UFU4_9ASCO9.890e-737.84Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KRT7_9PHAE1.190e-633.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JT61_9PHAE1.310e-637.66Integrase catalytic domain-containing protein n=1 ... [more]
A0A6S7HUF2_PARCT2.200e-637.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7IKL3_PARCT3.360e-636.36Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7JEY7_PARCT1.580e-536.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A512UHB7_9ASCO2.240e-535.53Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1062contigH-elongata_contig1062:11301..11576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929593.096547-CDS-H-elongata_contig1062:11300..115761622929593.096547-CDS-H-elongata_contig1062:11300..11576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1062 11301..11576 +
1691679083.199514-CDS-H-elongata_contig1062:11300..115761691679083.199514-CDS-H-elongata_contig1062:11300..11576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1062 11301..11576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1062.501.1prot_H-elongata_contig1062.501.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1062 11301..11576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1062.501.1

>prot_H-elongata_contig1062.501.1 ID=prot_H-elongata_contig1062.501.1|Name=mRNA_H-elongata_contig1062.501.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MAPAYDEFDDKIFPIVTRILKSRYGLCQNLTIGWSTIHEHLVEISFKSLK
SDPCLYIKSEYGVIAILTLYVDHVLLLGKDAAMLKGIKQTLM
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mRNA from alignment at H-elongata_contig1062:11301..11576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1062.501.1 ID=mRNA_H-elongata_contig1062.501.1|Name=mRNA_H-elongata_contig1062.501.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at H-elongata_contig1062:11301..11576+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCCCGCCTACGATGAATTCGACGACAAAATATTTCCAATCGTAAC GAGGATTCTCAAGAGTCGTTACGGACTCTGCCAGAACCTAACCATCGGAT GGAGCACGATTCACGAACACCTGGTAGAGATCAGCTTCAAAAGCCTCAAG TCGGACCCTTGCCTCTATATAAAGTCGGAGTATGGAGTCATCGCCATTTT GACCCTGTATGTCGACCATGTCCTGCTGCTCGGAAAAGACGCCGCGATGC TCAAGGGGATCAAGCAGACGCTGATG
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Coding sequence (CDS) from alignment at H-elongata_contig1062:11301..11576+

>mRNA_H-elongata_contig1062.501.1 ID=mRNA_H-elongata_contig1062.501.1|Name=mRNA_H-elongata_contig1062.501.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig1062:11301..11576+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCCCGCCTACGATGAATTCGACGACAAAATATTTCCAATCGTAAC
GAGGATTCTCAAGAGTCGTTACGGACTCTGCCAGAACCTAACCATCGGAT
GGAGCACGATTCACGAACACCTGGTAGAGATCAGCTTCAAAAGCCTCAAG
TCGGACCCTTGCCTCTATATAAAGTCGGAGTATGGAGTCATCGCCATTTT
GACCCTGTATGTCGACCATGTCCTGCTGCTCGGAAAAGACGCCGCGATGC
TCAAGGGGATCAAGCAGACGCTGATGATGGCTCCCGCCTACGATGAATTC
GACGACAAAATATTTCCAATCGTAACGAGGATTCTCAAGAGTCGTTACGG
ACTCTGCCAGAACCTAACCATCGGATGGAGCACGATTCACGAACACCTGG
TAGAGATCAGCTTCAAAAGCCTCAAGTCGGACCCTTGCCTCTATATAAAG
TCGGAGTATGGAGTCATCGCCATTTTGACCCTGTATGTCGACCATGTCCT
GCTGCTCGGAAAAGACGCCGCGATGCTCAAGGGGATCAAGCAGACGCTGA
TG
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