mRNA_H-elongata_contig106151.496.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106151.496.1
Unique NamemRNA_H-elongata_contig106151.496.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig106151.496.1 vs. uniprot
Match: UPI0003F0D16E (zinc finger protein 862-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0D16E)

HSP 1 Score: 77.4 bits (189), Expect = 1.190e-13
Identity = 52/152 (34.21%), Postives = 80/152 (52.63%), Query Frame = 1
Query:    7 LIQLEERFAKVDIFENCAVFDPQRFSTKENDLSEYGVDDIKMLEEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRNAAISTRRVWRGVKSSNGGGQFPNLYKLVKIYIIQPHSCIECERGFSAQSRLKYKARNALSPVHLEMLMRLSL 462
            ++ L ERF  V + +  ++FDP   S  E D S  G  D  + ++H           +  +E+AREW+  KN+M+D + ++   T+ + + VK       F NLYKL  I +I P S  +CERGFSA SR+K   RN +    L  L+ ++L
Sbjct:  574 IVNLRERFPDVHLLQAFSIFDP---SLLEKDDS--GRLDDTLQQQHLETLSTHYSDILSSEEMAREWEMMKNLMVDDQHSSFTCTQMMNKVVKQYKD--VFVNLYKLAVIGLIVPMSTADCERGFSALSRVKTTLRNRMCEKTLSNLLFITL 718          
BLAST of mRNA_H-elongata_contig106151.496.1 vs. uniprot
Match: A0A2Z6R8B9_9GLOM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6R8B9_9GLOM)

HSP 1 Score: 74.7 bits (182), Expect = 9.150e-13
Identity = 49/155 (31.61%), Postives = 81/155 (52.26%), Query Frame = 1
Query:    1 KALIQ-LEERFAKVDIFENCAVFDPQRFSTKENDLSEYGVDDIKMLEEHYG-KKHGS----VPQCVDPDELAREWQYAKNIMIDVRRNAAIST-RRVWRGVKSSNGGGQFPNLYKLVKIYIIQPHSCIECERGFSAQSRLKYKARNALSPVHLEM 444
            KAL++ L+  F   +++++  + DP+    +E+ LS YG++++K+L EH+G +KH S    V   ++  E  +EWQ  K+IM  +R    I     +W          +FPN+  LV I ++ P S    ER FS     K + RN L+   L+M
Sbjct:  268 KALVRNLQACFPYNELYDSMKILDPKELPLQESALSSYGIEELKLLCEHFGNQKHKSNGTPVQPLINSSECKKEWQMVKHIMKSIRNYDIIEGWHHIWSTCPQFKN--KFPNVNILVNIVLLVPLSNANVERVFSQHKLTKTRLRNKLNVKTLDM 420          
BLAST of mRNA_H-elongata_contig106151.496.1 vs. uniprot
Match: A0A8H3R5N1_9GLOM (WD repeat protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3R5N1_9GLOM)

HSP 1 Score: 74.7 bits (182), Expect = 1.040e-12
Identity = 49/155 (31.61%), Postives = 81/155 (52.26%), Query Frame = 1
Query:    1 KALIQ-LEERFAKVDIFENCAVFDPQRFSTKENDLSEYGVDDIKMLEEHYG-KKHGS----VPQCVDPDELAREWQYAKNIMIDVRRNAAIST-RRVWRGVKSSNGGGQFPNLYKLVKIYIIQPHSCIECERGFSAQSRLKYKARNALSPVHLEM 444
            KAL++ L+  F   +++++  + DP+    +E+ LS YG++++K+L EH+G +KH S    V   ++  E  +EWQ  K+IM  +R    I     +W          +FPN+  LV I ++ P S    ER FS     K + RN L+   L+M
Sbjct:  268 KALVRNLQACFPYNELYDSMKILDPKELPLQESALSSYGIEELKLLCEHFGNQKHKSNGTPVQPLINSSECKKEWQMVKHIMKSIRNYDIIEGWHHIWSTCPQFKN--KFPNVNILVNIVLLVPLSNANVERVFSQHKLTKTRLRNKLNVKTLDM 420          
BLAST of mRNA_H-elongata_contig106151.496.1 vs. uniprot
Match: A0A2N0QRW7_9GLOM (DUF4371 domain-containing protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N0QRW7_9GLOM)

HSP 1 Score: 70.9 bits (172), Expect = 2.040e-11
Identity = 45/135 (33.33%), Postives = 73/135 (54.07%), Query Frame = 1
Query:    1 KALIQ-LEERFAKVDIFENCAVFDPQRFSTKENDLSEYGVDDIKMLEEHYG-KKHGS----VPQCVDPDELAREWQYAKNIMIDVRRNAAISTRRVWRGVKSSNGG--GQFPNLYKLVKIYIIQPHSCIECERGF 381
            KAL+  L+ RF   D++++  + DP+    +E+ LS YG++++K++ EH+G +KH S    V   ++  E  +EWQ  K+IM  +R    I     W  + S+      QFPN+  LV I ++ P S    ER F
Sbjct:  330 KALVHSLQARFPCNDLYDSMKILDPKELPLQESALSSYGIEELKLIFEHFGNQKHKSNGIPVQPLINSSECKKEWQMVKHIMKSIRNYDIIEG---WHHIWSTRPQFKNQFPNVNILVNIVLLVPLSNANVERVF 461          
BLAST of mRNA_H-elongata_contig106151.496.1 vs. uniprot
Match: U9SIY2_RHIID (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9SIY2_RHIID)

HSP 1 Score: 63.2 bits (152), Expect = 6.170e-9
Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = 1
Query:    1 KALIQ-LEERFAKVDIFENCAVFDPQRFSTKENDLSEYGVDDIKMLEEHYG-KKHGS----VPQCVDPDELAREWQYAKNIMIDVRRNAAI--STRRVWRGVKSSNGGGQFPNLYKLVKIYIIQPHSCIECERGFS 384
            KAL+  L+ RF   D++++  + DP+    +E+ LS YG++++K++ EH+G +KH S    V   ++  E  +EWQ  K  M  +R    I      +W     S    QFPN+  LV I ++ P S    ER ++
Sbjct:  115 KALVHSLQARFPCNDLYDSMKILDPKELPLQESALSSYGIEELKLICEHFGNQKHKSNGIPVQPLINSSECKKEWQMVK-YMKSIRNYDIIIEGWHHIWS--TRSQFKNQFPNVNILVNIVLLVPLSNANVERVYA 247          
BLAST of mRNA_H-elongata_contig106151.496.1 vs. uniprot
Match: A0A817PME5_9BILA (Hypothetical protein n=4 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817PME5_9BILA)

HSP 1 Score: 63.5 bits (153), Expect = 8.200e-9
Identity = 48/161 (29.81%), Postives = 86/161 (53.42%), Query Frame = 1
Query:    1 KALIQLEERFAKVDIFENCAV-FDPQRFSTKENDLS--EYGVDDIKMLEEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRNAA--ISTRRVWRGV----KSSNGG--GQFPNLYKLVKIYIIQPHSCIECERGFSAQSRLKYKARNALSPVHLEMLM 450
            + L +L+ RF    + E+ ++ FD Q     +N+L   EYG   +  L     KK+ ++P   D + +  EW+  K I+ D  +N +  +S ++ W+       S+N     ++ ++  L+ +Y+I P + +ECERGFSA SR++   R+ LS   L++LM
Sbjct:  722 RLLQELDRRFKPSIVQEHLSMLFDVQHLIKNKNELDSIEYGRGSLDTLR----KKYKNLPDF-DYNLVRNEWESFKPILFDYIQNISYEVSEQQFWKNFITFKLSTNNSFIDEYKDILILLNVYLIYPTNSVECERGFSAMSRIQSIGRSRLSISTLQVLM 877          
BLAST of mRNA_H-elongata_contig106151.496.1 vs. uniprot
Match: UPI001C17B8B0 (Hypothetical protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C17B8B0)

HSP 1 Score: 61.6 bits (148), Expect = 3.530e-8
Identity = 39/120 (32.50%), Postives = 65/120 (54.17%), Query Frame = 1
Query:    1 KALIQ-LEERFAKVDIFENCAVFDPQRFSTKENDLSEYGVDDIKMLEEHYG-KKHGS----VPQCVDPDELAREWQYAKNIMIDVRRNAAISTRRVWRGVKSSNGGGQFPNLYKLVKIYI 342
            KAL+  L+ RF   D++++  + DP+    +E+ LS YG++++K++ EH+G +KH S    V   ++  E  +EWQ  K+IM  +R    I     W  + S+    QF N +  V I I
Sbjct:  417 KALVHSLQARFPCNDLYDSMKILDPKELPLQESALSSYGIEELKLIFEHFGNQKHKSNGIPVQPLINSSECKKEWQMVKHIMKSIRNYDIIEG---WHHIWSTRP--QFKNQFPNVNILI 531          
BLAST of mRNA_H-elongata_contig106151.496.1 vs. uniprot
Match: UPI001C16239B (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C16239B)

HSP 1 Score: 60.1 bits (144), Expect = 6.050e-8
Identity = 32/86 (37.21%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 KALIQ-LEERFAKVDIFENCAVFDPQRFSTKENDLSEYGVDDIKMLEEHYG-KKHGSVPQCVDP----DELAREWQYAKNIMIDVR 240
            KAL+  L+ RF+  D++++  + DP+    +E+ LS YG++++K+L EH+G +KH S  + V P     E  +EWQ  K+IM  +R
Sbjct:  132 KALVHSLQARFSHNDLYDSMKILDPKELPLQESALSSYGIEELKLLCEHFGNQKHKSNGKPVQPLINSSECKKEWQMVKHIMKSIR 217          
BLAST of mRNA_H-elongata_contig106151.496.1 vs. uniprot
Match: UPI0007AD13DB (zinc finger protein 862-like n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007AD13DB)

HSP 1 Score: 55.8 bits (133), Expect = 1.700e-6
Identity = 45/142 (31.69%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   43 IFENCAVFDPQRFSTKENDLSEYGVDDIKMLEEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRNAAISTRR-VWRGVKSSNGGGQ-FPNLYKLVKIYIIQPHSCIECERGFSAQSRLKYKARNALSPVHLEMLMRLSL 462
            I ++  V +P  +  ++ +L   G D I  L +H+ K        +    +  EWQ  K   I VR+N    T   +W  + + +   Q + N+ +LV+I ++ P S  +CERGFSAQ+R+K   R+ L     E LMR+SL
Sbjct:   46 ILDSFRVLNPDTWPEEQANLLTSGDDSIADLVKHFEKPLTEAGCKIAT--IQDEWQGLK---ILVRQNFKDKTYSGLWEMLMTKDPYKQDYKNILELVQIMLVLPISAAQCERGFSAQNRIKNSTRSCLGVSTTEDLMRISL 182          
BLAST of mRNA_H-elongata_contig106151.496.1 vs. uniprot
Match: UPI001C09BFD5 (zinc finger protein 862-like isoform X1 n=3 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C09BFD5)

HSP 1 Score: 56.2 bits (134), Expect = 2.510e-6
Identity = 38/126 (30.16%), Postives = 64/126 (50.79%), Query Frame = 1
Query:   52 NC-AVFDPQRFSTKENDLSEYGVDDIKMLEEHYGKKHGSVPQCVDPDELAREWQYAKNIMIDVRRNAAISTRRVWRGVKSSNG-GGQFPNLYKLVKIYIIQPHSCIECERGFSAQSRLKYKARNAL 423
            NC  +F+   +    ++L  YG D ++ L EH+     S    ++   +  EWQ  K ++    ++   S R +W+ + +       + NL  LV+I +I P S  +CERGFSAQ R+K   R++L
Sbjct:  300 NCFTIFNHDTWPENSDELLNYGSDKVEALVEHFSDVLTSFGCQLEA--IQEEWQSVKALISHTFQDK--SYRSLWQMLLTKEPYKTDYKNLLHLVEILLILPISAAQCERGFSAQKRIKSSLRSSL 421          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106151.496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
UPI0003F0D16E1.190e-1334.21zinc finger protein 862-like n=1 Tax=Saccoglossus ... [more]
A0A2Z6R8B9_9GLOM9.150e-1331.61Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rh... [more]
A0A8H3R5N1_9GLOM1.040e-1231.61WD repeat protein n=1 Tax=Rhizophagus clarus TaxID... [more]
A0A2N0QRW7_9GLOM2.040e-1133.33DUF4371 domain-containing protein n=3 Tax=Rhizopha... [more]
U9SIY2_RHIID6.170e-931.62Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
A0A817PME5_9BILA8.200e-929.81Hypothetical protein n=4 Tax=Rotaria sp. Silwood2 ... [more]
UPI001C17B8B03.530e-832.50Hypothetical protein n=3 Tax=Rhizophagus irregular... [more]
UPI001C16239B6.050e-837.21Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
UPI0007AD13DB1.700e-631.69zinc finger protein 862-like n=1 Tax=Sinocyclochei... [more]
UPI001C09BFD52.510e-630.16zinc finger protein 862-like isoform X1 n=3 Tax=Al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106151contigH-elongata_contig106151:144..734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog10224.XP_006824225.1
KEGG koko:K06669
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
GOsGO:0000070,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0008150,GO:0008152,GO:0008278,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0030892,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0034990,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140014,GO:1901360,GO:1901363,GO:1903047,GO:1990837
EggNOG free text desc.maintenance of mitotic sister chromatid cohesion, centromeric
EggNOG OGsCOG1196@1,KOG0964@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00535,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929592.6580968-CDS-H-elongata_contig106151:143..3381622929592.6580968-CDS-H-elongata_contig106151:143..338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106151 144..338 -
1691679082.9929893-CDS-H-elongata_contig106151:143..3381691679082.9929893-CDS-H-elongata_contig106151:143..338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106151 144..338 -
1622929592.6751266-CDS-H-elongata_contig106151:467..7341622929592.6751266-CDS-H-elongata_contig106151:467..734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106151 468..734 -
1691679083.0036612-CDS-H-elongata_contig106151:467..7341691679083.0036612-CDS-H-elongata_contig106151:467..734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106151 468..734 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106151.496.1prot_H-elongata_contig106151.496.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106151 144..734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106151.496.1

>prot_H-elongata_contig106151.496.1 ID=prot_H-elongata_contig106151.496.1|Name=mRNA_H-elongata_contig106151.496.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
KALIQLEERFAKVDIFENCAVFDPQRFSTKENDLSEYGVDDIKMLEEHYG
KKHGSVPQCVDPDELAREWQYAKNIMIDVRRNAAISTRRVWRGVKSSNGG
GQFPNLYKLVKIYIIQPHSCIECERGFSAQSRLKYKARNALSPVHLEMLM
RLSL
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mRNA from alignment at H-elongata_contig106151:144..734-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106151.496.1 ID=mRNA_H-elongata_contig106151.496.1|Name=mRNA_H-elongata_contig106151.496.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=591bp|location=Sequence derived from alignment at H-elongata_contig106151:144..734- (Himanthalia elongata Himel1 dioecious)
AAGGCGTTGATCCAGCTGGAGGAGCGGTTCGCCAAGGTGGATATCTTCGA GAACTGTGCGGTGTTCGACCCGCAGCGGTTTTCCACCAAGGAGAACGACC TCTCCGAGTACGGTGTCGATGATATCAAGATGTTGGAAGAGCACTACGGC AAGAAGCACGGTAGTGTGCCACAGTGCGTTGACCCTGACGAGCTGGCTCG AGAGTGGCAATACGCCAAGAACATCATGATCGATGTCAGACGCAACGCAG CAATCTCCACAAGAAGAGTGGACGCTCTCGCAAAGGCGTCTGAGGTGGAG GAATCAGCGGAAGACCCGACCCTCGGACGCCCAATGAAGAAGGGAGAGAG ATCGCGCAAGAACTTCAGTGAAATGTTCATCAACTTGTACGTTGAGGTCT GGAGAGGAGTCAAGAGTTCGAACGGAGGCGGTCAATTCCCTAACCTCTAC AAGCTGGTGAAGATCTACATCATCCAGCCTCATTCGTGTATCGAATGCGA GCGGGGTTTCTCGGCGCAAAGCAGGCTCAAATATAAAGCTCGAAATGCGC TTTCACCTGTTCACCTAGAGATGCTGATGCGGTTGTCTTTG
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Coding sequence (CDS) from alignment at H-elongata_contig106151:144..734-

>mRNA_H-elongata_contig106151.496.1 ID=mRNA_H-elongata_contig106151.496.1|Name=mRNA_H-elongata_contig106151.496.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig106151:144..734- (Himanthalia elongata Himel1 dioecious)
AAGGCGTTGATCCAGCTGGAGGAGCGGTTCGCCAAGGTGGATATCTTCGA
GAACTGTGCGGTGTTCGACCCGCAGCGGTTTTCCACCAAGGAGAACGACC
TCTCCGAGTACGGTGTCGATGATATCAAGATGTTGGAAGAGCACTACGGC
AAGAAGCACGGTAGTGTGCCACAGTGCGTTGACCCTGACGAGCTGGCTCG
AGAGTGGCAATACGCCAAGAACATCATGATCGATGTCAGACGCAACGCAG
CAATCTCCACAAGAAGAAAGGCGTTGATCCAGCTGGAGGAGCGGTTCGCC
AAGGTGGATATCTTCGAGAACTGTGCGGTGTTCGACCCGCAGCGGTTTTC
CACCAAGGAGAACGACCTCTCCGAGTACGGTGTCGATGATATCAAGATGT
TGGAAGAGCACTACGGCAAGAAGCACGGTAGTGTGCCACAGTGCGTTGAC
CCTGACGAGCTGGCTCGAGAGTGGCAATACGCCAAGAACATCATGATCGA
TGTCAGACGCAACGCAGCAATCTCCACAAGAAGAGTCTGGAGAGGAGTCA
AGAGTTCGAACGGAGGCGGTCAATTCCCTAACCTCTACAAGCTGGTGAAG
ATCTACATCATCCAGCCTCATTCGTGTATCGAATGCGAGCGGGGTTTCTC
GGCGCAAAGCAGGCTCAAATATAAAGCTCGAAATGCGCTTTCACCTGTTC
ACCTAGAGATGCTGATGCGGTTGTCTTTGGTCTGGAGAGGAGTCAAGAGT
TCGAACGGAGGCGGTCAATTCCCTAACCTCTACAAGCTGGTGAAGATCTA
CATCATCCAGCCTCATTCGTGTATCGAATGCGAGCGGGGTTTCTCGGCGC
AAAGCAGGCTCAAATATAAAGCTCGAAATGCGCTTTCACCTGTTCACCTA
GAGATGCTGATGCGGTTGTCTTTG
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