mRNA_H-elongata_contig105796.479.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105796.479.1
Unique NamemRNA_H-elongata_contig105796.479.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig105796.479.1 vs. uniprot
Match: D7G6P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P9_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 3.310e-7
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 STKFSDFEKLENLEEFSGRLNKGHSRIGSEHTVISVC 111
            STKF     L+NLE+ SGRLN+GHS IGSEHTVIS C
Sbjct:  102 STKFD----LDNLEDLSGRLNEGHSHIGSEHTVISAC 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105796.479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6P9_ECTSI3.310e-770.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105796contigH-elongata_contig105796:2125..2235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929591.1067472-CDS-H-elongata_contig105796:2124..22351622929591.1067472-CDS-H-elongata_contig105796:2124..2235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105796 2125..2235 +
1691679082.3469462-CDS-H-elongata_contig105796:2124..22351691679082.3469462-CDS-H-elongata_contig105796:2124..2235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105796 2125..2235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105796.479.1prot_H-elongata_contig105796.479.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105796 2125..2235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105796.479.1

>prot_H-elongata_contig105796.479.1 ID=prot_H-elongata_contig105796.479.1|Name=mRNA_H-elongata_contig105796.479.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
STKFSDFEKLENLEEFSGRLNKGHSRIGSEHTVISVC
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mRNA from alignment at H-elongata_contig105796:2125..2235+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105796.479.1 ID=mRNA_H-elongata_contig105796.479.1|Name=mRNA_H-elongata_contig105796.479.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=111bp|location=Sequence derived from alignment at H-elongata_contig105796:2125..2235+ (Himanthalia elongata Himel1 dioecious)
AGTACAAAGTTCAGCGACTTTGAGAAACTTGAGAACCTTGAAGAATTTTC
CGGCCGACTCAACAAGGGTCACTCCCGCATTGGGAGCGAACACACCGTCA
TCTCCGTTTGC
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Coding sequence (CDS) from alignment at H-elongata_contig105796:2125..2235+

>mRNA_H-elongata_contig105796.479.1 ID=mRNA_H-elongata_contig105796.479.1|Name=mRNA_H-elongata_contig105796.479.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig105796:2125..2235+ (Himanthalia elongata Himel1 dioecious)
AGTACAAAGTTCAGCGACTTTGAGAAACTTGAGAACCTTGAAGAATTTTC
CGGCCGACTCAACAAGGGTCACTCCCGCATTGGGAGCGAACACACCGTCA
TCTCCGTTTGCAGTACAAAGTTCAGCGACTTTGAGAAACTTGAGAACCTT
GAAGAATTTTCCGGCCGACTCAACAAGGGTCACTCCCGCATTGGGAGCGA
ACACACCGTCATCTCCGTTTGC
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