mRNA_H-elongata_contig105744.473.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105744.473.1
Unique NamemRNA_H-elongata_contig105744.473.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig105744.473.1 vs. uniprot
Match: A0A6H5KNX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX1_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 3.520e-8
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 2 
Query:  122 MSQVDRDVLRALFSATEGNSWYFKRNWCKDAKLEEWYGVEVNTDGR 259
            M+  DR VL ALF +T G+ W    NW  DA L +WYGV+V+ +GR
Sbjct:    1 MASTDRAVLSALFQSTRGSGWKQSNNWNTDAPLSDWYGVDVDGEGR 46
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BLAST of mRNA_H-elongata_contig105744.473.1 vs. uniprot
Match: A0A6H5KVC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC7_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 6.610e-8
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 2 
Query:  119 TMSQVDRDVLRALFSATEGNSWYFKRNWCKDAKLEEWYGVEVNTDGR 259
            TM+Q DR+ L AL++AT G  W  KRNW   A L +WYGVEV++ GR
Sbjct:   95 TMAQPDREALVALYNATGGAKWENKRNWNTRAALSQWYGVEVDSQGR 141
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BLAST of mRNA_H-elongata_contig105744.473.1 vs. uniprot
Match: A0A6H5KDU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU0_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 9.700e-8
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 2 
Query:  119 TMSQVDRDVLRALFSATEGNSWYFKRNWCKDAKLEEWYGVEVNTDGR 259
            TM+Q DR  L AL++AT G  W  KRNW   A L +WYGVEV++ GR
Sbjct:  139 TMAQPDRKALVALYNATGGAKWRNKRNWNTRAALSQWYGVEVDSQGR 185
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BLAST of mRNA_H-elongata_contig105744.473.1 vs. uniprot
Match: A0A7X4EHX8_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4EHX8_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.200e-7
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 2 
Query:  125 SQVDRDVLRALFSATEGNSWYFKRNWCKDAKLEEWYGVEVNTDGR 259
            S  DRD+L AL+ AT+G +W    NW  DA LEEWYGVE +  GR
Sbjct:   73 STSDRDILVALYEATDGPNWANSENWLTDAPLEEWYGVETDAAGR 117
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BLAST of mRNA_H-elongata_contig105744.473.1 vs. uniprot
Match: A0A6B1FFK8_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6B1FFK8_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 1.630e-7
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 2 
Query:  134 DRDVLRALFSATEGNSWYFKRNWCKDAKLEEWYGVEVNTDGR 259
            DRDVL A+++AT+G++W+ K NW  DA + EWYGV+ +  GR
Sbjct:   53 DRDVLVAIYNATDGSNWHRKENWLTDAPVAEWYGVDTDAAGR 94
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BLAST of mRNA_H-elongata_contig105744.473.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.050e-7
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 2 
Query:  122 MSQVDRDVLRALFSATEGNSWYFKRNWCKDAKLEEWYGVEVNTDGR 259
            M+  DRDVL AL++ATEG +W    NW  DA L +W+GV VN  GR
Sbjct:    1 MASTDRDVLVALYNATEGANWQNSINWGTDADLSQWFGVTVNHQGR 46
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BLAST of mRNA_H-elongata_contig105744.473.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.050e-7
Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 2 
Query:  107 RLPATMSQVDRDVLRALFSATEGNSWYFKRNWCKDAKLEEWYGVEVNTDGR 259
            ++P T++ VD   L AL+  T+G+ W  +  WC   +L+EW+GVEVN  GR
Sbjct:   17 KVPFTLAPVDYGALTALYRLTQGDGWTRRDGWCTPVELQEWFGVEVNEQGR 67
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BLAST of mRNA_H-elongata_contig105744.473.1 vs. uniprot
Match: B3JG60_9BACT (Leucine Rich Repeat protein n=3 Tax=Bacteroidaceae TaxID=815 RepID=B3JG60_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 7.610e-7
Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 2 
Query:  134 DRDVLRALFSATEGNSWYFKRNWCKDAKLEEWYGVEVNTDGR 259
            +RD+L AL+ AT G++W    NWC DA L EWYGV  +  GR
Sbjct:    9 ERDILIALYDATNGDAWTNNSNWCSDADLSEWYGVYTDYQGR 50
[Close]
BLAST of mRNA_H-elongata_contig105744.473.1 vs. uniprot
Match: D8LLG1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG1_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.060e-6
Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 2 
Query:  122 MSQVDRDVLRALFSATEGNSWYFKRNWCKDAKLEEWYGVEVNTDGR 259
            M+  D D L AL+ AT+G +W   RNW  D  L +WYGVE+N  GR
Sbjct:    1 MAATDYDALVALYHATDGANWKQNRNWITDTDLSQWYGVELNDQGR 46
[Close]
BLAST of mRNA_H-elongata_contig105744.473.1 vs. uniprot
Match: A0A7X3WE75_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3WE75_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.080e-6
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 2 
Query:  134 DRDVLRALFSATEGNSWYFKRNWCKDAKLEEWYGVEVNTDG 256
            DRDVL AL++AT+G +W    NW  DA LE WYGV   T+G
Sbjct:  753 DRDVLVALYNATDGPNWIRSDNWLTDAPLESWYGVSATTEG 793
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105744.473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNX1_9PHAE3.520e-850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVC7_9PHAE6.610e-855.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDU0_9PHAE9.700e-855.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7X4EHX8_9BACT1.200e-755.56Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A6B1FFK8_9BACT1.630e-752.38Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
D7FJV1_ECTSI3.050e-754.35LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FPS8_ECTSI3.050e-743.14Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
B3JG60_9BACT7.610e-752.38Leucine Rich Repeat protein n=3 Tax=Bacteroidaceae... [more]
D8LLG1_ECTSI1.060e-650.00LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A7X3WE75_9BACT1.080e-656.10BIG2 domain-containing protein n=1 Tax=Gemmatimona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105744contigH-elongata_contig105744:460..903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue4.4e-07
Seed eggNOG ortholog2880.D7FPS8
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105744.473.1prot_H-elongata_contig105744.473.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105744 460..833 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929590.626791-CDS-H-elongata_contig105744:459..6101622929590.626791-CDS-H-elongata_contig105744:459..610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105744 460..610 -
1691679082.148563-CDS-H-elongata_contig105744:459..6101691679082.148563-CDS-H-elongata_contig105744:459..610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105744 460..610 -
1622929590.6425865-CDS-H-elongata_contig105744:795..8331622929590.6425865-CDS-H-elongata_contig105744:795..833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105744 796..833 -
1691679082.1615644-CDS-H-elongata_contig105744:795..8331691679082.1615644-CDS-H-elongata_contig105744:795..833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105744 796..833 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929590.6623042-UTR-H-elongata_contig105744:833..9031622929590.6623042-UTR-H-elongata_contig105744:833..903Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105744 834..903 -
1691679082.171363-UTR-H-elongata_contig105744:833..9031691679082.171363-UTR-H-elongata_contig105744:833..903Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105744 834..903 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105744.473.1

>prot_H-elongata_contig105744.473.1 ID=prot_H-elongata_contig105744.473.1|Name=mRNA_H-elongata_contig105744.473.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MSFLRGNKLTNVRLPATMSQVDRDVLRALFSATEGNSWYFKRNWCKDAKL
EEWYGVEVNTDGR
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mRNA from alignment at H-elongata_contig105744:460..903-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105744.473.1 ID=mRNA_H-elongata_contig105744.473.1|Name=mRNA_H-elongata_contig105744.473.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=444bp|location=Sequence derived from alignment at H-elongata_contig105744:460..903- (Himanthalia elongata Himel1 dioecious)
GCCAAGTACAAACTCTTCTTACTAATTCCAAAGTCCTCCTGCGCCACAAT
TTTCATCCTCACATCTCGAGATGTCTTTTTTGAGGGGCAATAAATTGACT
AACGTACGGTAAGTGTTTTCAGCTAACTTCAGTCTCGTTGTTTAAACCGC
TCCTTCGCCGTTGTCTCTGTATTTTTTTCCAATTGATGATATTACAACTA
ACTGTATCTATGCGATGACCACACAGTATGTTTGACTTGACTTTTTGTTT
TCTTCGACCTTTCTTCCCTCGATGGGGCCAATCAACCCCCTAGGTTACCA
GCAACTATGTCCCAAGTCGATCGTGACGTACTTCGTGCACTGTTTTCGGC
AACCGAGGGGAACAGCTGGTACTTTAAAAGAAACTGGTGCAAAGATGCAA
AGCTCGAGGAATGGTATGGCGTTGAAGTCAACACGGATGGCCGG
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Coding sequence (CDS) from alignment at H-elongata_contig105744:460..903-

>mRNA_H-elongata_contig105744.473.1 ID=mRNA_H-elongata_contig105744.473.1|Name=mRNA_H-elongata_contig105744.473.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig105744:460..903- (Himanthalia elongata Himel1 dioecious)
ATGTCTTTTTTGAGGGGCAATAAATTGACTAACGTACGATGTCTTTTTTG
AGGGGCAATAAATTGACTAACGTACGGTTACCAGCAACTATGTCCCAAGT
CGATCGTGACGTACTTCGTGCACTGTTTTCGGCAACCGAGGGGAACAGCT
GGTACTTTAAAAGAAACTGGTGCAAAGATGCAAAGCTCGAGGAATGGTAT
GGCGTTGAAGTCAACACGGATGGCCGGGTTACCAGCAACTATGTCCCAAG
TCGATCGTGACGTACTTCGTGCACTGTTTTCGGCAACCGAGGGGAACAGC
TGGTACTTTAAAAGAAACTGGTGCAAAGATGCAAAGCTCGAGGAATGGTA
TGGCGTTGAAGTCAACACGGATGGCCGG
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