mRNA_H-elongata_contig105626.466.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105626.466.1
Unique NamemRNA_H-elongata_contig105626.466.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig105626.466.1 vs. uniprot
Match: D8LRZ5_ECTSI (DNA gyrase subunit B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRZ5_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 2.770e-33
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    4 VYVMLGEDGSCSVRDNGRGIPCELHPRTKKSALETVMTVLHAGGKFGGDESGYKVSGGLHGVGVSV 201
            VYV L EDGSC+VRDNGRGIPC++HPRTKKSALETV+TVLHAGGKFGGDESGYKVSGGLHGVGVSV
Sbjct:   95 VYVTLEEDGSCTVRDNGRGIPCDIHPRTKKSALETVLTVLHAGGKFGGDESGYKVSGGLHGVGVSV 160
[Close]
BLAST of mRNA_H-elongata_contig105626.466.1 vs. uniprot
Match: A0A835Z3N6_9STRA (DNA gyrase subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3N6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 8.770e-29
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    4 VYVMLGEDGSCSVRDNGRGIPCELHPRTKKSALETVMTVLHAGGKFGGDESGYKVSGGLHGVGVSV 201
            V+V L  DGSC+V DNGRGIPC LHP+T KSALETVMTVLHAGGKFGGD SGYKVSGGLHGVG+SV
Sbjct:   86 VFVTLETDGSCTVSDNGRGIPCALHPQTGKSALETVMTVLHAGGKFGGDGSGYKVSGGLHGVGISV 151
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BLAST of mRNA_H-elongata_contig105626.466.1 vs. uniprot
Match: A0A7S1XU47_9STRA (DNA topoisomerase 2 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU47_9STRA)

HSP 1 Score: 114 bits (286), Expect = 4.330e-28
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    4 VYVMLGEDGSCSVRDNGRGIPCELHPRTKKSALETVMTVLHAGGKFGGDESGYKVSGGLHGVGVSV 201
            V V L EDGSCSVRDNGRGIP E+H +T KSALETV+TVLHAGGKFGGD SGYKVSGGLHGVGVSV
Sbjct:  109 VDVFLHEDGSCSVRDNGRGIPTEVHSKTGKSALETVLTVLHAGGKFGGDASGYKVSGGLHGVGVSV 174
[Close]
BLAST of mRNA_H-elongata_contig105626.466.1 vs. uniprot
Match: A0A1F5P9T6_9BACT (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_02_FULL_46_11 TaxID=1817832 RepID=A0A1F5P9T6_9BACT)

HSP 1 Score: 113 bits (283), Expect = 1.130e-27
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    4 VYVMLGEDGSCSVRDNGRGIPCELHPRTKKSALETVMTVLHAGGKFGGDESGYKVSGGLHGVGVSV 201
            V V+L EDGS +VRDNGRGIP E+H +TKKSALETV+TVLHAGGKFGGD SGYKVSGGLHGVGVSV
Sbjct:  107 VKVILNEDGSVTVRDNGRGIPVEVHKQTKKSALETVLTVLHAGGKFGGDASGYKVSGGLHGVGVSV 172
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BLAST of mRNA_H-elongata_contig105626.466.1 vs. uniprot
Match: T2RDJ1_PAES9 (Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein n=1 Tax=Paeniclostridium sordellii (strain ATCC 9714 / DSM 2141 / JCM 3814 / LMG 15708 / NCIMB 10717 / 211) TaxID=1292036 RepID=T2RDJ1_PAES9)

HSP 1 Score: 104 bits (260), Expect = 2.090e-27
Identity = 51/66 (77.27%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    4 VYVMLGEDGSCSVRDNGRGIPCELHPRTKKSALETVMTVLHAGGKFGGDESGYKVSGGLHGVGVSV 201
            +YV + EDGS  VRDNGRGIP E+HP+T KS LETV+TVLHAGGKFGG   GYKVSGGLHGVGVSV
Sbjct:   58 IYVSINEDGSIFVRDNGRGIPVEVHPKTGKSTLETVLTVLHAGGKFGG--GGYKVSGGLHGVGVSV 121
[Close]
BLAST of mRNA_H-elongata_contig105626.466.1 vs. uniprot
Match: A0A1F7BS31_9BACT (DNA gyrase subunit B n=1 Tax=Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_51_15 TaxID=1801919 RepID=A0A1F7BS31_9BACT)

HSP 1 Score: 110 bits (275), Expect = 1.320e-26
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    4 VYVMLGEDGSCSVRDNGRGIPCELHPRTKKSALETVMTVLHAGGKFGGDESGYKVSGGLHGVGVSV 201
            V VML  D S SV DNGRGIP ++HP+TKKSALETV+T+LHAGGKFGGD+SGYKVSGGLHGVG SV
Sbjct:   62 VTVMLHNDNSISVEDNGRGIPVDIHPKTKKSALETVLTMLHAGGKFGGDDSGYKVSGGLHGVGASV 127
[Close]
BLAST of mRNA_H-elongata_contig105626.466.1 vs. uniprot
Match: K1YCH0_9BACT (DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1 Tax=uncultured bacterium (gcode 4) TaxID=1234023 RepID=K1YCH0_9BACT)

HSP 1 Score: 107 bits (267), Expect = 3.730e-26
Identity = 52/66 (78.79%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    4 VYVMLGEDGSCSVRDNGRGIPCELHPRTKKSALETVMTVLHAGGKFGGDESGYKVSGGLHGVGVSV 201
            + V L ED S SV DNGRGIP ++HP+T KSALETVMTVLHAGGKFGG ESGYKVSGGLHGVG SV
Sbjct:   59 ITVTLHEDNSVSVEDNGRGIPVDIHPKTGKSALETVMTVLHAGGKFGGAESGYKVSGGLHGVGASV 124
[Close]
BLAST of mRNA_H-elongata_contig105626.466.1 vs. uniprot
Match: A0A7S3XY21_HETAK (DNA gyrase subunit B n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY21_HETAK)

HSP 1 Score: 108 bits (271), Expect = 4.590e-26
Identity = 51/67 (76.12%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    1 QVYVMLGEDGSCSVRDNGRGIPCELHPRTKKSALETVMTVLHAGGKFGGDESGYKVSGGLHGVGVSV 201
            ++ +++  DGS SV+DNGRGIPCE+HP+T +SALETV+TVLHAGGKFGGD SGYKVSGGLHGVGVSV
Sbjct:   63 EILIIIHPDGSLSVQDNGRGIPCEVHPKTGRSALETVLTVLHAGGKFGGD-SGYKVSGGLHGVGVSV 128
[Close]
BLAST of mRNA_H-elongata_contig105626.466.1 vs. uniprot
Match: A0A7S3MEP9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEP9_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.500e-26
Identity = 47/66 (71.21%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    4 VYVMLGEDGSCSVRDNGRGIPCELHPRTKKSALETVMTVLHAGGKFGGDESGYKVSGGLHGVGVSV 201
            + V +  D S  V+DNGRGIPC  HP T KS+LETV+ VLHAGGKFGG+ESGYKVSGGLHGVG+SV
Sbjct:   35 ISVTMLPDNSIEVQDNGRGIPCAPHPSTGKSSLETVLCVLHAGGKFGGEESGYKVSGGLHGVGISV 100
[Close]
BLAST of mRNA_H-elongata_contig105626.466.1 vs. uniprot
Match: A0A4D9D639_9STRA (DNA gyrase subunit B n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D639_9STRA)

HSP 1 Score: 108 bits (269), Expect = 8.670e-26
Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    4 VYVMLGEDGSCSVRDNGRGIPCELHPRTKKSALETVMTVLHAGGKFGGDESGYKVSGGLHGVGVSV 201
            V V +G DGS +V D+GRGIPCE+H +T +SALETV+TVLHAGGKFGGD SGYKVSGGLHGVGVSV
Sbjct:  149 VEVTIGADGSVTVSDDGRGIPCEVHSKTGRSALETVLTVLHAGGKFGGDASGYKVSGGLHGVGVSV 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105626.466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRZ5_ECTSI2.770e-3390.91DNA gyrase subunit B n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835Z3N6_9STRA8.770e-2983.33DNA gyrase subunit B n=1 Tax=Tribonema minus TaxID... [more]
A0A7S1XU47_9STRA4.330e-2884.85DNA topoisomerase 2 n=1 Tax=Phaeomonas parva TaxID... [more]
A0A1F5P9T6_9BACT1.130e-2783.33DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1... [more]
T2RDJ1_PAES92.090e-2777.27Histidine kinase-, DNA gyrase B-, and HSP90-like A... [more]
A0A1F7BS31_9BACT1.320e-2678.79DNA gyrase subunit B n=1 Tax=Candidatus Peribacter... [more]
K1YCH0_9BACT3.730e-2678.79DNA topoisomerase (ATP-hydrolyzing) (Fragment) n=1... [more]
A0A7S3XY21_HETAK4.590e-2676.12DNA gyrase subunit B n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3MEP9_9STRA7.500e-2671.21Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9D639_9STRA8.670e-2677.27DNA gyrase subunit B n=2 Tax=Monodopsidaceae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105626contigH-elongata_contig105626:106..318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue4.5e-26
Seed eggNOG ortholog2880.D8LRZ5
KEGG koko:K02470,ko:K03164
KEGG Pathwayko01524,map01524
GOsGO:0000819,GO:0003674,GO:0003824,GO:0003916,GO:0003918,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006265,GO:0006276,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008094,GO:0008150,GO:0008152,GO:0009295,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0022402,GO:0030541,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0061505,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0098813,GO:0140097,GO:1901360
EggNOG free text desc.DNA topoisomerase type II (ATP-hydrolyzing) activity
EggNOG OGsCOG0187@1,KOG0355@2759
EC5.99.1.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size201
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929589.2400255-UTR-H-elongata_contig105626:105..1171622929589.2400255-UTR-H-elongata_contig105626:105..117Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105626 106..117 +
1691679081.8403819-UTR-H-elongata_contig105626:105..1171691679081.8403819-UTR-H-elongata_contig105626:105..117Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105626 106..117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929589.2555485-CDS-H-elongata_contig105626:117..3181622929589.2555485-CDS-H-elongata_contig105626:117..318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105626 118..318 +
1691679081.8552492-CDS-H-elongata_contig105626:117..3181691679081.8552492-CDS-H-elongata_contig105626:117..318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105626 118..318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105626.466.1prot_H-elongata_contig105626.466.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105626 118..318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105626.466.1

>prot_H-elongata_contig105626.466.1 ID=prot_H-elongata_contig105626.466.1|Name=mRNA_H-elongata_contig105626.466.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MLGEDGSCSVRDNGRGIPCELHPRTKKSALETVMTVLHAGGKFGGDESGY
KVSGGLHGVGVSVRGF*
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mRNA from alignment at H-elongata_contig105626:106..318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105626.466.1 ID=mRNA_H-elongata_contig105626.466.1|Name=mRNA_H-elongata_contig105626.466.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig105626:106..318+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTACGTGATGCTGGGGGAAGACGGGAGCTGCTCGGTGAGGGACAA
CGGGCGTGGCATCCCGTGCGAGCTGCACCCGCGGACAAAGAAGAGCGCGC
TGGAGACAGTCATGACTGTCCTTCACGCGGGGGGGAAATTTGGCGGGGAC
GAGAGCGGGTACAAGGTTTCCGGGGGTCTCCACGGCGTCGGCGTTTCGGT
GAGGGGGTTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig105626:106..318+

>mRNA_H-elongata_contig105626.466.1 ID=mRNA_H-elongata_contig105626.466.1|Name=mRNA_H-elongata_contig105626.466.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig105626:106..318+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGGGGAAGACGGGAGCTGCTCGGTGAGGGACAACGGGCGTGGCAT
CCCGTGCGAGCTGCACCCGCGGACAAAGAAGAGCGCGCTGGAGACAGTCA
TGACTGTCCTTCACGCGGGGGGGAAATTTGGCGGGGACGAGAGCGGGTAC
AAGGTTTCCGGGGGTCTCCACGGCGTCGGCGTTTCGGTGAGGGGGTTTTA
GATGCTGGGGGAAGACGGGAGCTGCTCGGTGAGGGACAACGGGCGTGGCA
TCCCGTGCGAGCTGCACCCGCGGACAAAGAAGAGCGCGCTGGAGACAGTC
ATGACTGTCCTTCACGCGGGGGGGAAATTTGGCGGGGACGAGAGCGGGTA
CAAGGTTTCCGGGGGTCTCCACGGCGTCGGCGTTTCGGTGAGGGGGTTTT
AG
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