mRNA_H-elongata_contig105590.463.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105590.463.1
Unique NamemRNA_H-elongata_contig105590.463.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig105590.463.1 vs. uniprot
Match: D7FHP4_ECTSI (AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP4_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.500e-22
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTEQEEVLMLVTNSLKV 150
            GYPSHFGQMECIKLITS NYMDKRIGYLGLTLLLT+QEEVLMLVTNSLKV
Sbjct:   58 GYPSHFGQMECIKLITSPNYMDKRIGYLGLTLLLTDQEEVLMLVTNSLKV 107
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BLAST of mRNA_H-elongata_contig105590.463.1 vs. uniprot
Match: A0A836CEJ3_9STRA (AP-1 complex subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEJ3_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.530e-19
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTEQEEVLMLVTNSLKV 150
            GYPSHFGQMECIKLITS  + DKRIGYLGL LLLTE+EEVLMLVTNSLKV
Sbjct:   58 GYPSHFGQMECIKLITSPEFTDKRIGYLGLMLLLTEKEEVLMLVTNSLKV 107
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BLAST of mRNA_H-elongata_contig105590.463.1 vs. uniprot
Match: A0A485KG16_9STRA (AP-1 complex subunit gamma n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KG16_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.150e-18
Identity = 41/49 (83.67%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTEQEEVLMLVTNSLK 147
            GYPSHFGQMEC+KLI +SN+ +KRIGYLGL LLLT+QEEVLMLVTNSLK
Sbjct:   58 GYPSHFGQMECLKLIAASNFSEKRIGYLGLMLLLTDQEEVLMLVTNSLK 106
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BLAST of mRNA_H-elongata_contig105590.463.1 vs. uniprot
Match: A0A453QUJ0_AEGTS (Adaptin_N domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453QUJ0_AEGTS)

HSP 1 Score: 80.9 bits (198), Expect = 1.030e-17
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTEQEEVLMLVTNSLK 147
            GYP+HFGQMEC+KLI +S + +KRIGYLGLTLLL E++EVLMLVTNSLK
Sbjct:   89 GYPTHFGQMECLKLIAASGFPEKRIGYLGLTLLLDERQEVLMLVTNSLK 137
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BLAST of mRNA_H-elongata_contig105590.463.1 vs. uniprot
Match: A0A8J5Y9Q8_9ROSI (Adaptin_N domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y9Q8_9ROSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.230e-17
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTEQEEVLMLVTNSLK 147
            GYP+HFGQMEC+KLI SS + DKRIGYLGL LLL E++EVLMLVTNSLK
Sbjct:   71 GYPTHFGQMECLKLIASSGFPDKRIGYLGLMLLLDERQEVLMLVTNSLK 119
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BLAST of mRNA_H-elongata_contig105590.463.1 vs. uniprot
Match: A0A6G0WMQ6_9STRA (AP-1 complex subunit gamma n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WMQ6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.400e-17
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTEQEEVLMLVTNSLK 147
            GYPSHFGQMEC+KLI +SN+ +KRIGYLGL LLLT+QEEVL LVTNSLK
Sbjct:   58 GYPSHFGQMECLKLIAASNFSEKRIGYLGLMLLLTDQEEVLTLVTNSLK 106
[Close]
BLAST of mRNA_H-elongata_contig105590.463.1 vs. uniprot
Match: A0A425C4M0_9STRA (Adaptin_N domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425C4M0_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.500e-17
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTEQEEVLMLVTNSLK 147
            GYPSHFGQMEC+KLI ++N+ +KRIGYLGL LLLT+QEEVL LVTNSLK
Sbjct:   58 GYPSHFGQMECLKLIAANNFSEKRIGYLGLMLLLTDQEEVLTLVTNSLK 106
[Close]
BLAST of mRNA_H-elongata_contig105590.463.1 vs. uniprot
Match: A0A397DE85_9STRA (Adaptin_N domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DE85_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.840e-17
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTEQEEVLMLVTNSLK 147
            GYPSHFGQMEC+KLI ++N+ +KRIGYLGL LLLT+QEEVL LVTNSLK
Sbjct:   58 GYPSHFGQMECLKLIAANNFSEKRIGYLGLMLLLTDQEEVLTLVTNSLK 106
[Close]
BLAST of mRNA_H-elongata_contig105590.463.1 vs. uniprot
Match: A0A8J5YV01_9ROSI (Adaptin_N domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YV01_9ROSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.010e-17
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTEQEEVLMLVTNSLK 147
            GYP+HFGQMEC+KLI SS + +KRIGYLGL LLL E++EVLMLVTNSLK
Sbjct:   71 GYPTHFGQMECLKLIASSGFPEKRIGYLGLMLLLDERQEVLMLVTNSLK 119
[Close]
BLAST of mRNA_H-elongata_contig105590.463.1 vs. uniprot
Match: A0A397F0B5_9STRA (Adaptin_N domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F0B5_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.470e-17
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 GYPSHFGQMECIKLITSSNYMDKRIGYLGLTLLLTEQEEVLMLVTNSLK 147
            GYPSHFGQMEC+KLI ++N+ +KRIGYLGL LLLT+QEEVL LVTNSLK
Sbjct:   58 GYPSHFGQMECLKLIAANNFSEKRIGYLGLMLLLTDQEEVLTLVTNSLK 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105590.463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHP4_ECTSI3.500e-2296.00AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxI... [more]
A0A836CEJ3_9STRA4.530e-1988.00AP-1 complex subunit gamma n=1 Tax=Tribonema minus... [more]
A0A485KG16_9STRA2.150e-1883.67AP-1 complex subunit gamma n=1 Tax=Aphanomyces ste... [more]
A0A453QUJ0_AEGTS1.030e-1777.55Adaptin_N domain-containing protein n=1 Tax=Aegilo... [more]
A0A8J5Y9Q8_9ROSI1.230e-1779.59Adaptin_N domain-containing protein n=2 Tax=Gossyp... [more]
A0A6G0WMQ6_9STRA1.400e-1781.63AP-1 complex subunit gamma n=1 Tax=Aphanomyces eut... [more]
A0A425C4M0_9STRA1.500e-1779.59Adaptin_N domain-containing protein n=1 Tax=Aphano... [more]
A0A397DE85_9STRA1.840e-1779.59Adaptin_N domain-containing protein n=2 Tax=Aphano... [more]
A0A8J5YV01_9ROSI3.010e-1777.55Adaptin_N domain-containing protein n=1 Tax=Gossyp... [more]
A0A397F0B5_9STRA3.470e-1779.59Adaptin_N domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105590contigH-elongata_contig105590:519..680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog2880.D7FHP4
KEGG koko:K11279,ko:K12391
KEGG Pathwayko04142,map04142
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1062@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size138
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929588.4912553-CDS-H-elongata_contig105590:518..6561622929588.4912553-CDS-H-elongata_contig105590:518..656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105590 519..656 -
1691679081.6443365-CDS-H-elongata_contig105590:518..6561691679081.6443365-CDS-H-elongata_contig105590:518..656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105590 519..656 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929588.5113785-UTR-H-elongata_contig105590:656..6801622929588.5113785-UTR-H-elongata_contig105590:656..680Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105590 657..680 -
1691679081.663019-UTR-H-elongata_contig105590:656..6801691679081.663019-UTR-H-elongata_contig105590:656..680Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105590 657..680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105590.463.1prot_H-elongata_contig105590.463.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105590 519..656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105590.463.1

>prot_H-elongata_contig105590.463.1 ID=prot_H-elongata_contig105590.463.1|Name=mRNA_H-elongata_contig105590.463.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MECIKLITSSNYMDKRIGYLGLTLLLTEQEEVLMLVTNSLKVTIS*
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mRNA from alignment at H-elongata_contig105590:519..680-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105590.463.1 ID=mRNA_H-elongata_contig105590.463.1|Name=mRNA_H-elongata_contig105590.463.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig105590:519..680- (Himanthalia elongata Himel1 dioecious)
GGGTACCCGTCCCACTTCGGGCAGATGGAGTGCATCAAGCTTATCACCTC
GTCGAATTACATGGACAAGCGCATCGGGTACCTTGGGCTGACGTTATTGC
TCACCGAACAGGAGGAAGTGCTCATGCTGGTGACCAACTCCCTTAAGGTA
ACCATATCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig105590:519..680-

>mRNA_H-elongata_contig105590.463.1 ID=mRNA_H-elongata_contig105590.463.1|Name=mRNA_H-elongata_contig105590.463.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig105590:519..680- (Himanthalia elongata Himel1 dioecious)
ATGGAGTGCATCAAGCTTATCACCTCGTCGAATTACATGGACAAGCGCAT
CGGGTACCTTGGGCTGACGTTATTGCTCACCGAACAGGAGGAAGTGCTCA
TGCTGGTGACCAACTCCCTTAAGGTAACCATATCTTAAATGGAGTGCATC
AAGCTTATCACCTCGTCGAATTACATGGACAAGCGCATCGGGTACCTTGG
GCTGACGTTATTGCTCACCGAACAGGAGGAAGTGCTCATGCTGGTGACCA
ACTCCCTTAAGGTAACCATATCTTAA
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