mRNA_H-elongata_contig10559.461.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10559.461.1
Unique NamemRNA_H-elongata_contig10559.461.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10559.461.1 vs. uniprot
Match: D8LT60_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT60_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 6.740e-58
Identity = 115/220 (52.27%), Postives = 136/220 (61.82%), Query Frame = 1 
Query:    1 IVFPGHRYTAPKRGPNGHQSMGGFTLQELLDANYKRSSGNIFALGKPNFLEPNMNAAYDFVPVGLARRVIRR--DTPMTATQWWCESSAAWAVVAGAFRTSEVNANIQPDSRWIPVWGRLHRYDGEGKEGGGRVR-----------GSDGILALPPFNKYGPEWWESTLRIIVYDAAAETGAYGLERALDVPEDERGEAEKKLMIGAALFFEAVLRGSGG 621
            I+FPG RY A     +     GGFTL E LDAN+ R+SGNIF +G+PNF EP+M+ AYDFVPVGLARRV+RR    P+    W C SS AWA VA  FR      +    S    VWG +       + GG R               DG L+LPP +KYGPEWWESTLRIIVYDAAAET AYGLERAL VP++ERG  E+ +M+ A L+ EAVLR   G
Sbjct:  548 IIFPGERYAAAGSTHDKASGGGGFTLLEFLDANFDRASGNIFMVGRPNFPEPSMDTAYDFVPVGLARRVVRRHNSAPLPTALWVCHSSKAWATVAAEFRVVATVGDTY-GSNSNGVWGLIATLVDRRRFGGSRRATAASTTENNDGSEDGSLSLPPRDKYGPEWWESTLRIIVYDAAAETAAYGLERALAVPDEERGPFERDMMVTAVLYLEAVLRSYNG 766
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10559.461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT60_ECTSI6.740e-5852.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10559contigH-elongata_contig10559:4192..5680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue1.4e-51
Seed eggNOG ortholog2880.D8LT60
Preferred nameTMEM260
EggNOG free text desc.Protein of unknown function (DUF2723)
EggNOG OGs28K3T@1,2QSIA@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_005360.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1044
Cds size1044
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929588.283874-CDS-H-elongata_contig10559:4191..46121622929588.283874-CDS-H-elongata_contig10559:4191..4612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10559 4192..4612 -
1691679081.591816-CDS-H-elongata_contig10559:4191..46121691679081.591816-CDS-H-elongata_contig10559:4191..4612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10559 4192..4612 -
1622929588.3056927-CDS-H-elongata_contig10559:5057..56801622929588.3056927-CDS-H-elongata_contig10559:5057..5680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10559 5058..5680 -
1691679081.6046104-CDS-H-elongata_contig10559:5057..56801691679081.6046104-CDS-H-elongata_contig10559:5057..5680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10559 5058..5680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10559.461.1prot_H-elongata_contig10559.461.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10559 4192..5680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10559.461.1

>prot_H-elongata_contig10559.461.1 ID=prot_H-elongata_contig10559.461.1|Name=mRNA_H-elongata_contig10559.461.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=348bp
IVFPGHRYTAPKRGPNGHQSMGGFTLQELLDANYKRSSGNIFALGKPNFL
EPNMNAAYDFVPVGLARRVIRRDTPMTATQWWCESSAAWAVVAGAFRTSE
VNANIQPDSRWIPVWGRLHRYDGEGKEGGGRVRGSDGILALPPFNKYGPE
WWESTLRIIVYDAAAETGAYGLERALDVPEDERGEAEKKLMIGAALFFEA
VLRGSGGRHSVSVLKNAGLAYLNLVKSKREGIKHHRDILRVPHDPLCAAH
LLPWNTETDKSCEAPQVLQGECTGNDEHHTTRFVTTREPIYSVDTNKRNP
SNVVGDWRGAASARFMQLWKEFLKHDDAPLDSQYDAVRTIYGHLLDRL
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mRNA from alignment at H-elongata_contig10559:4192..5680-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10559.461.1 ID=mRNA_H-elongata_contig10559.461.1|Name=mRNA_H-elongata_contig10559.461.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1489bp|location=Sequence derived from alignment at H-elongata_contig10559:4192..5680- (Himanthalia elongata Himel1 dioecious)
ATCGTATTTCCAGGACACCGATACACTGCACCCAAAAGAGGACCAAACGG
TCACCAAAGTATGGGAGGCTTCACCTTGCAAGAGCTCCTCGACGCAAACT
ACAAGCGCTCTTCGGGCAATATTTTTGCCCTGGGGAAGCCAAACTTTCTC
GAGCCCAACATGAACGCTGCGTACGACTTTGTGCCTGTGGGACTTGCTAG
GCGGGTGATACGTCGCGATACGCCGATGACGGCGACACAGTGGTGGTGCG
AGTCTTCCGCCGCTTGGGCGGTCGTAGCAGGGGCGTTCAGAACCAGCGAG
GTGAATGCCAACATCCAGCCCGACTCTCGCTGGATTCCGGTCTGGGGGAG
GTTGCATCGGTACGACGGTGAGGGTAAGGAAGGCGGCGGCCGAGTTCGAG
GTTCGGATGGCATTCTCGCCCTACCTCCGTTCAATAAGTACGGGCCAGAG
TGGTGGGAAAGCACACTGAGAATCATCGTGTACGACGCGGCGGCGGAAAC
GGGGGCGTACGGACTCGAGCGCGCGCTGGATGTGCCCGAAGACGAGCGGG
GTGAAGCAGAAAAGAAGCTCATGATTGGAGCCGCACTCTTTTTCGAGGCA
GTATTACGGGGAAGTGGTGGGAGGTGAGTGTGTGTGTGTGTGCGTGTGTG
TGTGTGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATCGATGTGTG
CCAACTACACAGCTCAGACCGGCTAACCACATAGTCAACCCAGTTTTCTG
CTAGACTTTTCCTTACAATTAATAGTGTTCCCGCAAGACGGAATTGTATT
AAAGGCCCTGTTTTTCACTGTACCATGTAAGGCATTTTGTCCGTCGCGTG
TTCCCCCGAGCCTCTGTTGAAGTGGGAGTCATTAGGACAGTTGGCTCCTT
CAATGATTTGGAAGCACCACTATTCGTTCTCGTTTCTGTGGCATGAACTG
TGAGGGTGCTGTCCGGCGCTTGAATCTTTCTCGTCGGCGAGTCGTAGCGT
CACGGCCACCCACAATGATGATTTCTCCCCGAAACCTTCCTAAATCCTCT
TCTTCGACCTCGTACCAGACACAGCGTCTCGGTGTTGAAGAATGCGGGTC
TAGCCTACCTCAACCTGGTAAAGTCTAAGCGAGAGGGTATCAAACACCAT
CGGGACATCCTCCGCGTGCCCCACGACCCACTGTGCGCAGCTCATCTGCT
GCCGTGGAACACCGAAACGGATAAATCTTGTGAAGCGCCCCAAGTACTAC
AAGGTGAATGTACAGGGAACGATGAACACCACACGACGCGCTTCGTCACC
ACCCGAGAGCCGATTTATTCGGTCGACACCAACAAGAGAAACCCCAGCAA
TGTAGTGGGCGACTGGAGAGGCGCTGCAAGCGCTAGATTCATGCAACTCT
GGAAGGAATTTTTGAAGCACGACGACGCGCCCCTCGATAGCCAGTACGAT
GCTGTCCGCACCATCTACGGCCACTTACTCGACCGACTG
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Coding sequence (CDS) from alignment at H-elongata_contig10559:4192..5680-

>mRNA_H-elongata_contig10559.461.1 ID=mRNA_H-elongata_contig10559.461.1|Name=mRNA_H-elongata_contig10559.461.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2088bp|location=Sequence derived from alignment at H-elongata_contig10559:4192..5680- (Himanthalia elongata Himel1 dioecious)
ATCGTATTTCCAGGACACCGATACACTGCACCCAAAAGAGGACCAAACGG
TCACCAAAGTATGGGAGGCTTCACCTTGCAAGAGCTCCTCGACGCAAACT
ACAAGCGCTCTTCGGGCAATATTTTTGCCCTGGGGAAGCCAAACTTTCTC
GAGCCCAACATGAACGCTGCGTACGACTTTGTGCCTGTGGGACTTGCTAG
GCGGGTGATACGTCGCGATACGCCGATGACGGCGACACAGTGGTGGTGCG
AGTCTTCCGCCGCTTGGGCGGTCGTAGCAGGGGCGTTCAGAACCAGCGAG
GTGAATGCCAACATCCAGCCCGACTCTCGCTGGATTCCGGTCTGGGGGAG
GTTGCATCGGTACGACGGTGAGGGTAAGGAAGGCGGCGGCCGAGTTCGAG
GTTCGGATGGCATTCTCGCCCTACCTCCGTTCAATAAGTACGGGCCAGAG
TGGTGGGAAAGCACACTGAGAATCATCGTGTACGACGCGGCGGCGGAAAC
GGGGGCGTACGGACTCGAGCGCGCGCTGGATGTGCCCGAAGACGAGCGGG
GTGAAGCAGAAAAGAAGCTCATGATTGGAGCCGCACTCTTTTTCGAGGCA
GTATTACGGGGAAGTGGTGGGAGATCGTATTTCCAGGACACCGATACACT
GCACCCAAAAGAGGACCAAACGGTCACCAAAGTATGGGAGGCTTCACCTT
GCAAGAGCTCCTCGACGCAAACTACAAGCGCTCTTCGGGCAATATTTTTG
CCCTGGGGAAGCCAAACTTTCTCGAGCCCAACATGAACGCTGCGTACGAC
TTTGTGCCTGTGGGACTTGCTAGGCGGGTGATACGTCGCGATACGCCGAT
GACGGCGACACAGTGGTGGTGCGAGTCTTCCGCCGCTTGGGCGGTCGTAG
CAGGGGCGTTCAGAACCAGCGAGGTGAATGCCAACATCCAGCCCGACTCT
CGCTGGATTCCGGTCTGGGGGAGGTTGCATCGGTACGACGGTGAGGGTAA
GGAAGGCGGCGGCCGAGTTCGAGGTTCGGATGGCATTCTCGCCCTACCTC
CGTTCAATAAGTACGGGCCAGAGTGGTGGGAAAGCACACTGAGAATCATC
GTGTACGACGCGGCGGCGGAAACGGGGGCGTACGGACTCGAGCGCGCGCT
GGATGTGCCCGAAGACGAGCGGGGTGAAGCAGAAAAGAAGCTCATGATTG
GAGCCGCACTCTTTTTCGAGGCAGTATTACGGGGAAGTGGTGGGAGACAC
AGCGTCTCGGTGTTGAAGAATGCGGGTCTAGCCTACCTCAACCTGGTAAA
GTCTAAGCGAGAGGGTATCAAACACCATCGGGACATCCTCCGCGTGCCCC
ACGACCCACTGTGCGCAGCTCATCTGCTGCCGTGGAACACCGAAACGGAT
AAATCTTGTGAAGCGCCCCAAGTACTACAAGGTGAATGTACAGGGAACGA
TGAACACCACACGACGCGCTTCGTCACCACCCGAGAGCCGATTTATTCGG
TCGACACCAACAAGAGAAACCCCAGCAATGTAGTGGGCGACTGGAGAGGC
GCTGCAAGCGCTAGATTCATGCAACTCTGGAAGGAATTTTTGAAGCACGA
CGACGCGCCCCTCGATAGCCAGTACGATGCTGTCCGCACCATCTACGGCC
ACTTACTCGACCGACTGACACAGCGTCTCGGTGTTGAAGAATGCGGGTCT
AGCCTACCTCAACCTGGTAAAGTCTAAGCGAGAGGGTATCAAACACCATC
GGGACATCCTCCGCGTGCCCCACGACCCACTGTGCGCAGCTCATCTGCTG
CCGTGGAACACCGAAACGGATAAATCTTGTGAAGCGCCCCAAGTACTACA
AGGTGAATGTACAGGGAACGATGAACACCACACGACGCGCTTCGTCACCA
CCCGAGAGCCGATTTATTCGGTCGACACCAACAAGAGAAACCCCAGCAAT
GTAGTGGGCGACTGGAGAGGCGCTGCAAGCGCTAGATTCATGCAACTCTG
GAAGGAATTTTTGAAGCACGACGACGCGCCCCTCGATAGCCAGTACGATG
CTGTCCGCACCATCTACGGCCACTTACTCGACCGACTG
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