mRNA_H-elongata_contig105522.457.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A2N0P5T6_9GLOM (Uncharacterized protein (Fragment) n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N0P5T6_9GLOM) HSP 1 Score: 115 bits (288), Expect = 2.590e-30 Identity = 62/123 (50.41%), Postives = 85/123 (69.11%), Query Frame = 1
Query: 1 NMVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
N + PS VP EL LT++E++LIAR +VM V RL+GGQYGYRG+V+N QD F + LPR + S E I++IR + + + R FTVR++++ AL+WL NN Y D+ IDEEALQ+LP
Sbjct: 43 NNMDPSEVPEELRDLTEIEEMLIARAFTVMSVYRLRGGQYGYRGNVINFPQDVHEFATWLPRNLLSLE--ILIIRHHSASDLTAFRDFTVRRAKVTRALQWLKANNRYYADIIIDEEALQSLP 163
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A6S7G3B5_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G3B5_PARCT) HSP 1 Score: 110 bits (276), Expect = 3.760e-27 Identity = 54/123 (43.90%), Postives = 84/123 (68.29%), Query Frame = 1
Query: 1 NMVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
N + P VP +L LT +E++LI+RVC +M+V R GGQ GY+GHVLN+ QD +F++ LP RV ++P++++R T R FTVR+ ++ EA+ WL NNP ++D++ID + +Q+LP
Sbjct: 180 NDMDPGTVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVA--DLPVLIVRRHGAEDT--HRDFTVRRHKVLEAVLWLKTNNPFFKDIEIDRDVIQSLP 298
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A2N0RDA9_9GLOM (Uncharacterized protein (Fragment) n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N0RDA9_9GLOM) HSP 1 Score: 104 bits (259), Expect = 2.440e-26 Identity = 56/123 (45.53%), Postives = 77/123 (62.60%), Query Frame = 1
Query: 1 NMVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
N + P VP EL LT++E++LIAR +VM V RL+GGQYGYRG+V+N QD F + LP+ S E+ I+ + R FTV ++++ AL+WL NN Y D+ IDEEA Q+LP
Sbjct: 9 NNMDPGEVPEELRDLTEIEEMLIARAFTVMSVYRLRGGQYGYRGNVINFPQDVHEFATRLPQNPLSLEILIICHHSASDLTV--FRDFTVHRAKVTRALQWLKANNRYYADIIIDEEAFQSLP 129
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A6H5JBH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH9_9PHAE) HSP 1 Score: 106 bits (264), Expect = 4.690e-26 Identity = 57/121 (47.11%), Postives = 79/121 (65.29%), Query Frame = 1
Query: 13 PSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SG--RTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
P VP EL LT E++LIAR C +M+V+ L+GGQ GY GHV+N+AQD ++LPR + +VPI++IR G G + VR++R++ AL+WLI NNP YRD+ +D AL LP
Sbjct: 3 PGSVPVELQGLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPR--LAADVPIIIIRR---EGQEPGQHKDLHVRRARVQRALQWLIANNPYYRDIVLDNTALSQLP 118
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A6S7JBU2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBU2_PARCT) HSP 1 Score: 105 bits (261), Expect = 4.960e-26 Identity = 51/123 (41.46%), Postives = 82/123 (66.67%), Query Frame = 1
Query: 1 NMVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
N + P VP +L LT +E++LI+RVC +M+V R GGQ GY+GHVLN+ QD +F++ LP RV ++P++++R FTVR+ ++ EA+ WL NNP +++++ID + +Q+LP
Sbjct: 54 NDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVA--DLPVLIVRRHG------AEDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLP 168
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A372Q975_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus sp. MUCL 43196 TaxID=1803374 RepID=A0A372Q975_9GLOM) HSP 1 Score: 102 bits (255), Expect = 6.270e-26 Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 1
Query: 22 VPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEAL 357
VP EL LT++E++LIARV +VM V RL+GGQYGYRG+V+N +QD F + L + S E I++IR + + + R FTVRQ+++ AL+WL NN Y D+ IDEEAL
Sbjct: 6 VPEELQDLTEIEEMLIARVFTVMSVYRLRGGQYGYRGNVINFSQDVYEFATQLSQNPLSLE--ILIIRHHSASDLTAYRDFTVRQAKVTHALQWLKANNQYYVDIIIDEEAL 115
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A6S7JXT5_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JXT5_PARCT) HSP 1 Score: 108 bits (269), Expect = 1.900e-25 Identity = 53/123 (43.09%), Postives = 84/123 (68.29%), Query Frame = 1
Query: 1 NMVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
N + P VP +L LT +E++LI+RVC +M+V R GGQ GY+GHVLN+ QD +F++ LP RV ++P++++R T R FTVR+ ++ EA+ WL NNP +++++ID + +Q+LP
Sbjct: 165 NDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVA--DLPVLIVRRHGAEDT--HRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLP 283
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A7D9LMQ1_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LMQ1_PARCT) HSP 1 Score: 108 bits (269), Expect = 2.000e-25 Identity = 53/123 (43.09%), Postives = 84/123 (68.29%), Query Frame = 1
Query: 1 NMVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
N + P VP +L LT +E++LI+RVC +M+V R GGQ GY+GHVLN+ QD +F++ LP RV ++P++++R T R FTVR+ ++ EA+ WL NNP +++++ID + +Q+LP
Sbjct: 154 NDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVA--DLPVLIVRRHGAEDT--HRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLP 272
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: UPI00106C8F71 (uncharacterized protein LOC114545138 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C8F71) HSP 1 Score: 106 bits (265), Expect = 2.160e-25 Identity = 52/123 (42.28%), Postives = 83/123 (67.48%), Query Frame = 1
Query: 1 NMVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
N + P VP +L LT +E++LI+RVC +M+V R GGQ GY+GHVLN+ QD +F++ LP +V ++P++++R T + FTVR+ ++ EA+ WL NNP ++D++ID + +Q LP
Sbjct: 53 NDMDPGTVPEQLRGLTQVEEMLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVA--DLPVMIVRRQGADET--HKDFTVRRHKVFEAISWLKTNNPFFKDIEIDRDIIQRLP 171
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A7D9ETB4_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9ETB4_PARCT) HSP 1 Score: 105 bits (261), Expect = 5.380e-25 Identity = 53/123 (43.09%), Postives = 83/123 (67.48%), Query Frame = 1
Query: 1 NMVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
N + P VP +L+ LT +E++LI+RVC +M+V R GGQ GY+G VLN+ QD +F+ LP RV ++P++++R T T R FTVR+ ++ EA+ WL NN ++D++ID + +Q+LP
Sbjct: 130 NDMDPGIVPEQLSGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGRVLNLPQDIQSFLKRLPSRVA--DLPVLIVRRHGTEDT--HRDFTVRRHKVVEAVLWLKTNNLFFKDIEIDRDVIQSLP 248 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig105522.457.1 >prot_H-elongata_contig105522.457.1 ID=prot_H-elongata_contig105522.457.1|Name=mRNA_H-elongata_contig105522.457.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp MVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQback to top mRNA from alignment at H-elongata_contig105522:647..1015- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig105522.457.1 ID=mRNA_H-elongata_contig105522.457.1|Name=mRNA_H-elongata_contig105522.457.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at H-elongata_contig105522:647..1015- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig105522:647..1015- >mRNA_H-elongata_contig105522.457.1 ID=mRNA_H-elongata_contig105522.457.1|Name=mRNA_H-elongata_contig105522.457.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig105522:647..1015- (Himanthalia elongata Himel1 dioecious)back to top |