mRNA_H-elongata_contig105522.457.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105522.457.1
Unique NamemRNA_H-elongata_contig105522.457.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A2N0P5T6_9GLOM (Uncharacterized protein (Fragment) n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N0P5T6_9GLOM)

HSP 1 Score: 115 bits (288), Expect = 2.590e-30
Identity = 62/123 (50.41%), Postives = 85/123 (69.11%), Query Frame = 1
Query:    1 NMVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
            N + PS VP EL  LT++E++LIAR  +VM V RL+GGQYGYRG+V+N  QD   F + LPR + S E  I++IR  + +   + R FTVR++++  AL+WL  NN  Y D+ IDEEALQ+LP
Sbjct:   43 NNMDPSEVPEELRDLTEIEEMLIARAFTVMSVYRLRGGQYGYRGNVINFPQDVHEFATWLPRNLLSLE--ILIIRHHSASDLTAFRDFTVRRAKVTRALQWLKANNRYYADIIIDEEALQSLP 163          
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A6S7G3B5_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G3B5_PARCT)

HSP 1 Score: 110 bits (276), Expect = 3.760e-27
Identity = 54/123 (43.90%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 NMVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
            N + P  VP +L  LT +E++LI+RVC +M+V R  GGQ GY+GHVLN+ QD  +F++ LP RV   ++P++++R      T   R FTVR+ ++ EA+ WL  NNP ++D++ID + +Q+LP
Sbjct:  180 NDMDPGTVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVA--DLPVLIVRRHGAEDT--HRDFTVRRHKVLEAVLWLKTNNPFFKDIEIDRDVIQSLP 298          
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A2N0RDA9_9GLOM (Uncharacterized protein (Fragment) n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N0RDA9_9GLOM)

HSP 1 Score: 104 bits (259), Expect = 2.440e-26
Identity = 56/123 (45.53%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 NMVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
            N + P  VP EL  LT++E++LIAR  +VM V RL+GGQYGYRG+V+N  QD   F + LP+   S E+ I+     +       R FTV ++++  AL+WL  NN  Y D+ IDEEA Q+LP
Sbjct:    9 NNMDPGEVPEELRDLTEIEEMLIARAFTVMSVYRLRGGQYGYRGNVINFPQDVHEFATRLPQNPLSLEILIICHHSASDLTV--FRDFTVHRAKVTRALQWLKANNRYYADIIIDEEAFQSLP 129          
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A6H5JBH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH9_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 4.690e-26
Identity = 57/121 (47.11%), Postives = 79/121 (65.29%), Query Frame = 1
Query:   13 PSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SG--RTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
            P  VP EL  LT  E++LIAR C +M+V+ L+GGQ GY GHV+N+AQD     ++LPR   + +VPI++IR     G   G  +   VR++R++ AL+WLI NNP YRD+ +D  AL  LP
Sbjct:    3 PGSVPVELQGLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPR--LAADVPIIIIRR---EGQEPGQHKDLHVRRARVQRALQWLIANNPYYRDIVLDNTALSQLP 118          
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A6S7JBU2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBU2_PARCT)

HSP 1 Score: 105 bits (261), Expect = 4.960e-26
Identity = 51/123 (41.46%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    1 NMVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
            N + P  VP +L  LT +E++LI+RVC +M+V R  GGQ GY+GHVLN+ QD  +F++ LP RV   ++P++++R            FTVR+ ++ EA+ WL  NNP +++++ID + +Q+LP
Sbjct:   54 NDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVA--DLPVLIVRRHG------AEDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLP 168          
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A372Q975_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus sp. MUCL 43196 TaxID=1803374 RepID=A0A372Q975_9GLOM)

HSP 1 Score: 102 bits (255), Expect = 6.270e-26
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   22 VPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEAL 357
            VP EL  LT++E++LIARV +VM V RL+GGQYGYRG+V+N +QD   F + L +   S E  I++IR  + +   + R FTVRQ+++  AL+WL  NN  Y D+ IDEEAL
Sbjct:    6 VPEELQDLTEIEEMLIARVFTVMSVYRLRGGQYGYRGNVINFSQDVYEFATQLSQNPLSLE--ILIIRHHSASDLTAYRDFTVRQAKVTHALQWLKANNQYYVDIIIDEEAL 115          
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A6S7JXT5_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JXT5_PARCT)

HSP 1 Score: 108 bits (269), Expect = 1.900e-25
Identity = 53/123 (43.09%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 NMVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
            N + P  VP +L  LT +E++LI+RVC +M+V R  GGQ GY+GHVLN+ QD  +F++ LP RV   ++P++++R      T   R FTVR+ ++ EA+ WL  NNP +++++ID + +Q+LP
Sbjct:  165 NDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVA--DLPVLIVRRHGAEDT--HRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLP 283          
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A7D9LMQ1_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LMQ1_PARCT)

HSP 1 Score: 108 bits (269), Expect = 2.000e-25
Identity = 53/123 (43.09%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 NMVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
            N + P  VP +L  LT +E++LI+RVC +M+V R  GGQ GY+GHVLN+ QD  +F++ LP RV   ++P++++R      T   R FTVR+ ++ EA+ WL  NNP +++++ID + +Q+LP
Sbjct:  154 NDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVA--DLPVLIVRRHGAEDT--HRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLP 272          
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: UPI00106C8F71 (uncharacterized protein LOC114545138 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C8F71)

HSP 1 Score: 106 bits (265), Expect = 2.160e-25
Identity = 52/123 (42.28%), Postives = 83/123 (67.48%), Query Frame = 1
Query:    1 NMVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
            N + P  VP +L  LT +E++LI+RVC +M+V R  GGQ GY+GHVLN+ QD  +F++ LP +V   ++P++++R      T   + FTVR+ ++ EA+ WL  NNP ++D++ID + +Q LP
Sbjct:   53 NDMDPGTVPEQLRGLTQVEEMLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVA--DLPVMIVRRQGADET--HKDFTVRRHKVFEAISWLKTNNPFFKDIEIDRDIIQRLP 171          
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Match: A0A7D9ETB4_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9ETB4_PARCT)

HSP 1 Score: 105 bits (261), Expect = 5.380e-25
Identity = 53/123 (43.09%), Postives = 83/123 (67.48%), Query Frame = 1
Query:    1 NMVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQDPGAFVSSLPRRVTSTEVPIVVIREVATAGT*SGRTFTVRQSRIREALRWLIDNNPAYRDVDIDEEALQTLP 369
            N + P  VP +L+ LT +E++LI+RVC +M+V R  GGQ GY+G VLN+ QD  +F+  LP RV   ++P++++R   T  T   R FTVR+ ++ EA+ WL  NN  ++D++ID + +Q+LP
Sbjct:  130 NDMDPGIVPEQLSGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGRVLNLPQDIQSFLKRLPSRVA--DLPVLIVRRHGTEDT--HRDFTVRRHKVVEAVLWLKTNNLFFKDIEIDRDVIQSLP 248          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105522.457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N0P5T6_9GLOM2.590e-3050.41Uncharacterized protein (Fragment) n=2 Tax=Rhizoph... [more]
A0A6S7G3B5_PARCT3.760e-2743.90Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A2N0RDA9_9GLOM2.440e-2645.53Uncharacterized protein (Fragment) n=1 Tax=Rhizoph... [more]
A0A6H5JBH9_9PHAE4.690e-2647.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S7JBU2_PARCT4.960e-2641.46Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A372Q975_9GLOM6.270e-2650.00Uncharacterized protein n=1 Tax=Rhizophagus sp. MU... [more]
A0A6S7JXT5_PARCT1.900e-2543.09Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A7D9LMQ1_PARCT2.000e-2543.09Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
UPI00106C8F712.160e-2542.28uncharacterized protein LOC114545138 n=1 Tax=Dendr... [more]
A0A7D9ETB4_PARCT5.380e-2543.09Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105522contigH-elongata_contig105522:647..1015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score69.3
Seed ortholog evalue9.4e-10
Seed eggNOG ortholog588596.U9SRZ5
EggNOG OGs2CC8B@1,2S3BW@2759,3A3QP@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105522.457.1prot_H-elongata_contig105522.457.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105522 767..1012 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929587.870764-UTR-H-elongata_contig105522:646..7661622929587.870764-UTR-H-elongata_contig105522:646..766Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105522 647..766 -
1691679081.4493387-UTR-H-elongata_contig105522:646..7661691679081.4493387-UTR-H-elongata_contig105522:646..766Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105522 647..766 -
1622929587.9615145-UTR-H-elongata_contig105522:1012..10151622929587.9615145-UTR-H-elongata_contig105522:1012..1015Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105522 1013..1015 -
1691679081.4738169-UTR-H-elongata_contig105522:1012..10151691679081.4738169-UTR-H-elongata_contig105522:1012..1015Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105522 1013..1015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929587.9403121-CDS-H-elongata_contig105522:766..10121622929587.9403121-CDS-H-elongata_contig105522:766..1012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105522 767..1012 -
1691679081.461146-CDS-H-elongata_contig105522:766..10121691679081.461146-CDS-H-elongata_contig105522:766..1012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105522 767..1012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105522.457.1

>prot_H-elongata_contig105522.457.1 ID=prot_H-elongata_contig105522.457.1|Name=mRNA_H-elongata_contig105522.457.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MVRPSPVPPELAILTDLEQLLIARVCSVMKVVRLQGGQYGYRGHVLNIAQ
DPGAFVSSLPRRVTSTEVPIVVIREVATAGT*
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mRNA from alignment at H-elongata_contig105522:647..1015-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105522.457.1 ID=mRNA_H-elongata_contig105522.457.1|Name=mRNA_H-elongata_contig105522.457.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at H-elongata_contig105522:647..1015- (Himanthalia elongata Himel1 dioecious)
AATATGGTCAGACCTTCACCTGTTCCTCCGGAGCTTGCGATATTAACAGA CCTCGAACAGTTGTTGATAGCAAGGGTGTGCTCAGTAATGAAAGTCGTAC GGCTACAGGGTGGTCAGTATGGATATAGAGGACATGTACTCAACATTGCT CAAGATCCTGGTGCCTTCGTTTCGAGTTTACCCAGAAGAGTTACGTCCAC AGAGGTGCCTATTGTCGTTATACGAGAGGTAGCGACTGCTGGCACATAGT CCGGGCGTACTTTTACTGTCCGTCAATCCCGCATTCGCGAGGCATTGAGA TGGCTCATAGACAATAATCCAGCATATCGCGATGTTGATATTGACGAGGA GGCGCTACAAACGCTTCCC
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Coding sequence (CDS) from alignment at H-elongata_contig105522:647..1015-

>mRNA_H-elongata_contig105522.457.1 ID=mRNA_H-elongata_contig105522.457.1|Name=mRNA_H-elongata_contig105522.457.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig105522:647..1015- (Himanthalia elongata Himel1 dioecious)
ATGGTCAGACCTTCACCTGTTCCTCCGGAGCTTGCGATATTAACAGACCT
CGAACAGTTGTTGATAGCAAGGGTGTGCTCAGTAATGAAAGTCGTACGGC
TACAGGGTGGTCAGTATGGATATAGAGGACATGTACTCAACATTGCTCAA
GATCCTGGTGCCTTCGTTTCGAGTTTACCCAGAAGAGTTACGTCCACAGA
GGTGCCTATTGTCGTTATACGAGAGGTAGCGACTGCTGGCACATAGATGG
TCAGACCTTCACCTGTTCCTCCGGAGCTTGCGATATTAACAGACCTCGAA
CAGTTGTTGATAGCAAGGGTGTGCTCAGTAATGAAAGTCGTACGGCTACA
GGGTGGTCAGTATGGATATAGAGGACATGTACTCAACATTGCTCAAGATC
CTGGTGCCTTCGTTTCGAGTTTACCCAGAAGAGTTACGTCCACAGAGGTG
CCTATTGTCGTTATACGAGAGGTAGCGACTGCTGGCACATAG
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