mRNA_H-elongata_contig105508.455.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105508.455.1
Unique NamemRNA_H-elongata_contig105508.455.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig105508.455.1 vs. uniprot
Match: A0A6H5JBT2_9PHAE (PS_pyruv_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT2_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.460e-11
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:  205 NVSECVLLFGAFCNGNLGDVIQASTMARLITSLADESTCVWHGH 336
            +V EC+LLFGA+ NGN+GDVIQ+STM RL++++A   TC+WH H
Sbjct:   40 DVGECILLFGAYANGNMGDVIQSSTMGRLMSNVAPAGTCIWHAH 83
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BLAST of mRNA_H-elongata_contig105508.455.1 vs. uniprot
Match: D7FQC2_ECTSI (Putative phosphate/phosphoenolpyruvate translocator protein (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQC2_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 2.130e-9
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:  196 IAPNVSECVLLFGAFCNGNLGDVIQASTMARLITSLADESTCVWHGH 336
            ++P+V EC+LLFGAFCNGN+GDVIQ   M  L+ S+A +  C W+ H
Sbjct:  103 VSPDVGECILLFGAFCNGNMGDVIQPMAMEHLLASVAPDQ-CFWYAH 148
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BLAST of mRNA_H-elongata_contig105508.455.1 vs. uniprot
Match: A0A6H5K4R1_9PHAE (PS_pyruv_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4R1_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.100e-7
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:  205 NVSECVLLFGAFCNGNLGDVIQASTMARLITSLADESTCVWHGH 336
            +VS+C+LL+GAFCNGN+GDVIQ   M  L+  L  E  C W+ H
Sbjct:   73 DVSDCILLYGAFCNGNMGDVIQPQAMENLLAMLVPEQ-CFWYAH 115
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BLAST of mRNA_H-elongata_contig105508.455.1 vs. uniprot
Match: A0A6H5JM00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM00_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.060e-6
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:  196 IAPNVSECVLLFGAFCNGNLGDVIQASTMARLITSLADESTCVWHGH 336
            +A +V +C+LLFG FCNGN+GDV+Q   M  L+ S+A    C W+ H
Sbjct:   45 LADDVGDCILLFGGFCNGNMGDVVQPIAMQDLLASVAP-GQCFWYAH 90
[Close]
BLAST of mRNA_H-elongata_contig105508.455.1 vs. uniprot
Match: D7FID7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID7_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.960e-6
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:  205 NVSECVLLFGAFCNGNLGDVIQASTMARLITSLADESTCVWHGH 336
            +V +C+LLFG FCNGN+GDV+Q   M  L+ S+A +  C W+ H
Sbjct:   39 DVGDCILLFGGFCNGNMGDVVQPIAMQDLLASVAPDQ-CFWYAH 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105508.455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JBT2_9PHAE1.460e-1161.36PS_pyruv_trans domain-containing protein n=1 Tax=E... [more]
D7FQC2_ECTSI2.130e-955.32Putative phosphate/phosphoenolpyruvate translocato... [more]
A0A6H5K4R1_9PHAE2.100e-754.55PS_pyruv_trans domain-containing protein n=2 Tax=E... [more]
A0A6H5JM00_9PHAE1.060e-648.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FID7_ECTSI1.960e-650.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105508contigH-elongata_contig105508:455..790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue4.3e-08
Seed eggNOG ortholog2880.D7FQC2
EggNOG free text desc.carbohydrate transport
EggNOG OGsKOG1441@1,KOG1441@2759
Ec32 ortholog descriptionTriose-phosphate transporter domain
Ec32 orthologEc-12_007870.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size336
Cds size270
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929587.6082683-UTR-H-elongata_contig105508:454..5201622929587.6082683-UTR-H-elongata_contig105508:454..520Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105508 455..520 +
1691679081.35203-UTR-H-elongata_contig105508:454..5201691679081.35203-UTR-H-elongata_contig105508:454..520Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105508 455..520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929587.6238167-CDS-H-elongata_contig105508:520..7901622929587.6238167-CDS-H-elongata_contig105508:520..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105508 521..790 +
1691679081.3615923-CDS-H-elongata_contig105508:520..7901691679081.3615923-CDS-H-elongata_contig105508:520..790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105508 521..790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105508.455.1prot_H-elongata_contig105508.455.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105508 521..790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105508.455.1

>prot_H-elongata_contig105508.455.1 ID=prot_H-elongata_contig105508.455.1|Name=mRNA_H-elongata_contig105508.455.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
MSAKVKAIFLAAVISLGSIALAGSVQQPFDVPSPTTTLVKQEIIAPNVSE
CVLLFGAFCNGNLGDVIQASTMARLITSLADESTCVWHGH
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mRNA from alignment at H-elongata_contig105508:455..790+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105508.455.1 ID=mRNA_H-elongata_contig105508.455.1|Name=mRNA_H-elongata_contig105508.455.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at H-elongata_contig105508:455..790+ (Himanthalia elongata Himel1 dioecious)
TGATCTTATCCCGTTGCTGACACACATCGCCCCTCGCCTAGAGTGAACTT
GCAGCAAAACACATCTATGTCCGCTAAGGTAAAGGCAATATTCCTTGCAG
CCGTCATTTCTTTGGGCTCCATAGCCTTGGCAGGCTCGGTACAACAGCCC
TTCGACGTCCCAAGTCCAACCACAACTCTTGTGAAGCAGGAGATCATCGC
CCCGAATGTTAGCGAGTGTGTTCTGCTTTTCGGAGCCTTCTGTAACGGGA
ACCTTGGAGATGTTATTCAAGCATCGACGATGGCGAGGCTCATCACAAGC
TTGGCTGATGAAAGCACGTGTGTCTGGCACGGTCAC
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Coding sequence (CDS) from alignment at H-elongata_contig105508:455..790+

>mRNA_H-elongata_contig105508.455.1 ID=mRNA_H-elongata_contig105508.455.1|Name=mRNA_H-elongata_contig105508.455.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig105508:455..790+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGCTAAGGTAAAGGCAATATTCCTTGCAGCCGTCATTTCTTTGGG
CTCCATAGCCTTGGCAGGCTCGGTACAACAGCCCTTCGACGTCCCAAGTC
CAACCACAACTCTTGTGAAGCAGGAGATCATCGCCCCGAATGTTAGCGAG
TGTGTTCTGCTTTTCGGAGCCTTCTGTAACGGGAACCTTGGAGATGTTAT
TCAAGCATCGACGATGGCGAGGCTCATCACAAGCTTGGCTGATGAAAGCA
CGTGTGTCTGGCACGGTCACATGTCCGCTAAGGTAAAGGCAATATTCCTT
GCAGCCGTCATTTCTTTGGGCTCCATAGCCTTGGCAGGCTCGGTACAACA
GCCCTTCGACGTCCCAAGTCCAACCACAACTCTTGTGAAGCAGGAGATCA
TCGCCCCGAATGTTAGCGAGTGTGTTCTGCTTTTCGGAGCCTTCTGTAAC
GGGAACCTTGGAGATGTTATTCAAGCATCGACGATGGCGAGGCTCATCAC
AAGCTTGGCTGATGAAAGCACGTGTGTCTGGCACGGTCAC
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