mRNA_H-elongata_contig105491.453.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105491.453.1
Unique NamemRNA_H-elongata_contig105491.453.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig105491.453.1 vs. uniprot
Match: D7G0J8_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J8_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.900e-39
Identity = 63/94 (67.02%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 HVGEMYTSAAPYDPIFWVIHPEAERFLSWRRILGREGIEGYDFDETWGYRHVGGIVGDTGAVCDWSTVRPGTLDMPSCFKKTCGGHYATDTLPF 282
            +VGEMYTSAAPYDP+FWVIHP A+R L+WRR+LGR+G EG+DFDETWGY H   +VG+TG VC+W  V PG+ DMP+C K  CGGH   D LPF
Sbjct:  520 NVGEMYTSAAPYDPLFWVIHPTADRLLAWRRMLGRQGAEGWDFDETWGYAH-SSVVGETGTVCNWDDVVPGSGDMPTCVKGICGGHNEDDLLPF 612          
BLAST of mRNA_H-elongata_contig105491.453.1 vs. uniprot
Match: A0A6H5LKB4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LKB4_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 7.190e-39
Identity = 60/93 (64.52%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    4 VGEMYTSAAPYDPIFWVIHPEAERFLSWRRILGREGIEGYDFDETWGYRHVGGIVGDTGAVCDWSTVRPGTLDMPSCFKKTCGGHYATDTLPF 282
            VGEM+TSAAPYDP+FWV+HP A+R L+WRR+LGR+G+EG+DFDETWGY H   +VG+TG VC+W  V PG+ DMP+C    CGGH   D LPF
Sbjct:  521 VGEMFTSAAPYDPVFWVVHPTADRLLAWRRMLGRQGVEGWDFDETWGYTHTS-VVGETGTVCNWDDVVPGSGDMPTCITGICGGHNEDDLLPF 612          
BLAST of mRNA_H-elongata_contig105491.453.1 vs. uniprot
Match: D7FSP4_ECTSI (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSP4_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 7.500e-37
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 1
Query:    1 HVGEMYTSAAPYDPIFWVIHPEAERFLSWRRILGREGIEGYDFDETWGYRHVGGIVGDTGAVCDWSTVRPGTLDMPSCFKKTCGGHYATDTLPF 282
            HVGE+Y+S+APYDP+FWVIHP AERF+ W+R L RE  + + F E WGY H G +VG+TG VCDWS VR GTLDMP+C K  CGGH A D LPF
Sbjct:  547 HVGELYSSSAPYDPLFWVIHPTAERFMGWKRKLARERPDVHPFSEDWGYTH-GNVVGETGMVCDWSGVRQGTLDMPTCVKGICGGHSAGDLLPF 639          
BLAST of mRNA_H-elongata_contig105491.453.1 vs. uniprot
Match: D7G0J9_ECTSI (PKD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J9_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 4.680e-36
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 HVGEMYTSAAPYDPIFWVIHPEAERFLSWRRILGREGIEGYDFDETWGYRHVGGIVGDTGAVCDWSTVRPGTLDMPSCFKKTCGGHYATDTLPF 282
            HVGE+YTS+APYDP+FWVIHP AERF+ WRR LG E  + +  DETW Y H G +VG+TG VCDW  VR G+LDMP+C K  CGGH A D LPF
Sbjct:  529 HVGELYTSSAPYDPLFWVIHPTAERFMGWRRKLGVEQPDMWPLDETWDYSH-GWVVGETGTVCDWDDVREGSLDMPTCRKGICGGHGADDLLPF 621          
BLAST of mRNA_H-elongata_contig105491.453.1 vs. uniprot
Match: A0A6H5L3M0_9PHAE (PKD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M0_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 5.840e-35
Identity = 61/94 (64.89%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 HVGEMYTSAAPYDPIFWVIHPEAERFLSWRRILGREGIEGYDFDETWGYRHVGGIVGDTGAVCDWSTVRPGTLDMPSCFKKTCGGHYATDTLPF 282
            HVGE+YTS+APYDP+FWVIHP AERFLSWRR L  E  + +  DETWGY H G +VG+TG VCDWS V    LDMPSC +  CGGH   D LPF
Sbjct:  524 HVGELYTSSAPYDPLFWVIHPTAERFLSWRRKLATERPDVWALDETWGYSH-GHVVGETGVVCDWSGVGDDFLDMPSCVRGICGGHGVDDMLPF 616          
BLAST of mRNA_H-elongata_contig105491.453.1 vs. uniprot
Match: A0A7S2CY94_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CY94_9STRA)

HSP 1 Score: 109 bits (272), Expect = 4.450e-28
Identity = 50/98 (51.02%), Postives = 64/98 (65.31%), Query Frame = 1
Query:    1 HVGEMYTSAAPYDPIFWVIHPEAERFLSWRRILGREGIEGYDFDETWGYRH--VGGIV--GDTGAVCDWSTVRPGTLDMPSCFKKTCGGHYATDTLPF 282
            H GEM+TSAAPYDP FW IH  A+RFLSW+RIL   G+   D+DE+W Y H    G+    D G VCDW+ VR G  D+P+C K+ C GH   + +P+
Sbjct:   60 HAGEMFTSAAPYDPTFWPIHTTADRFLSWKRILRANGL--IDWDESWAYVHDMAPGMTPASDAGQVCDWTAVRDGLFDLPNCSKQICPGHLPFEEIPW 155          
BLAST of mRNA_H-elongata_contig105491.453.1 vs. uniprot
Match: A0A7S2AY68_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AY68_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.110e-26
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 HVGEMYTSAAPYDPIFWVIHPEAERFLSWRRILGREGIEGYDFDETWGYRHVGGIVGDTGAVCDWSTVRPGTLDMPSCFKKTCGGHYATDTLP 279
            +VGE+YTS AP DP+FW IH  AER ++W+RIL  +G+   DF++TWGY H      DTG VC+W  V  G   MP+C  + C GH   D LP
Sbjct:   49 YVGELYTSNAPMDPLFWPIHTSAERMMNWKRILSHKGL--VDFNQTWGYAHPADTPSDTGTVCNWEAVDAGVATMPTCQVQECEGHGENDMLP 139          
BLAST of mRNA_H-elongata_contig105491.453.1 vs. uniprot
Match: A0A7S2AXN9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AXN9_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.250e-26
Identity = 50/94 (53.19%), Postives = 60/94 (63.83%), Query Frame = 1
Query:    1 HVGEMYTSAAPYDPIFWVIHPEAERFLSWRRILGREGIEGYDFDETWGYRHVGGIVGDTGAVCDWSTVRPGTLDMPSCFKKTCGGHYATDTLPF 282
            H GEMYTSAAPYDP FW+IHP AER LSWRR+L    +  + F++TWGY H G    D G +C+W  V      +P C+  TC GH A DT PF
Sbjct:  279 HPGEMYTSAAPYDPTFWLIHPSAERMLSWRRMLDHLSV--HTFNQTWGYSHQGDP-SDMGQICEWDDVSD--FGLPFCYDSTCPGHNAADTTPF 367          
BLAST of mRNA_H-elongata_contig105491.453.1 vs. uniprot
Match: F0Y8V5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8V5_AURAN)

HSP 1 Score: 109 bits (272), Expect = 9.000e-26
Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = 1
Query:    7 GEMYTSAAPYDPIFWVIHPEAERFLSWRRILGREGIEGYDFDETWGYRHVGGIVGDTGAVCDWSTVRPGTLDMPSCFKKTCGGHYATDTLPF 282
            GEM+TSAAP DPIFW +H  AERFL + R++   G+   D +ETWGY HV  +  DTG VC+W     GT+ MP C ++TC GH + D LPF
Sbjct:  481 GEMFTSAAPQDPIFWPLHGNAERFLQYIRLVAATGV--IDLNETWGYEHVSDVASDTGVVCNWDNAT-GTMGMPHCTRETCPGHRSDDLLPF 569          
BLAST of mRNA_H-elongata_contig105491.453.1 vs. uniprot
Match: A0A7S2CGQ1_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CGQ1_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.580e-25
Identity = 51/94 (54.26%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    1 HVGEMYTSAAPYDPIFWVIHPEAERFLSWRRILGREGIEGYDFDETWGYRHVGGIVGDTGAVCDWSTVRPGTLDMPSCFKKTCGGHYATDTLPF 282
            H GEMYTSAAPYDP FWV+H  AER L +RR+           DETWG+ H+     D G VCDWS+V  G   +P+C  K C GH ATDTLPF
Sbjct:  507 HAGEMYTSAAPYDPTFWVLHTAAERLLQYRRMQADVS----PLDETWGFAHMN-AASDVGVVCDWSSVENGGDSLPTCTAKLCEGHGATDTLPF 595          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105491.453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0J8_ECTSI1.900e-3967.02Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
A0A6H5LKB4_9PHAE7.190e-3964.52TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
D7FSP4_ECTSI7.500e-3764.89PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G0J9_ECTSI4.680e-3664.89PKD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L3M0_9PHAE5.840e-3564.89PKD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2CY94_9STRA4.450e-2851.02Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2AY68_9STRA1.110e-2649.46Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2AXN9_9STRA3.250e-2653.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0Y8V5_AURAN9.000e-2652.17Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2CGQ1_9STRA1.580e-2554.26Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105491contigH-elongata_contig105491:475..921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue4.7e-31
Seed eggNOG ortholog2880.D7G0J8
EggNOG free text desc.Common central domain of tyrosinase
EggNOG OGs2D2AI@1,2SM4K@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105491.453.1prot_H-elongata_contig105491.453.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105491 487..921 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929587.486713-UTR-H-elongata_contig105491:474..4861622929587.486713-UTR-H-elongata_contig105491:474..486Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105491 475..486 +
1691679081.3008358-UTR-H-elongata_contig105491:474..4861691679081.3008358-UTR-H-elongata_contig105491:474..486Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105491 475..486 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929587.50018-CDS-H-elongata_contig105491:486..5931622929587.50018-CDS-H-elongata_contig105491:486..593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105491 487..593 +
1691679081.3108013-CDS-H-elongata_contig105491:486..5931691679081.3108013-CDS-H-elongata_contig105491:486..593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105491 487..593 +
1622929587.5197606-CDS-H-elongata_contig105491:758..9211622929587.5197606-CDS-H-elongata_contig105491:758..921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105491 759..921 +
1691679081.3192418-CDS-H-elongata_contig105491:758..9211691679081.3192418-CDS-H-elongata_contig105491:758..921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105491 759..921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105491.453.1

>prot_H-elongata_contig105491.453.1 ID=prot_H-elongata_contig105491.453.1|Name=mRNA_H-elongata_contig105491.453.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
MYTSAAPYDPIFWVIHPEAERFLSWRRILGREGIEGYDFDETWGYRHVGG
IVGDTGAVCDWSTVRPGTLDMPSCFKKTCGGHYATDTLPF
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mRNA from alignment at H-elongata_contig105491:475..921+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105491.453.1 ID=mRNA_H-elongata_contig105491.453.1|Name=mRNA_H-elongata_contig105491.453.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=447bp|location=Sequence derived from alignment at H-elongata_contig105491:475..921+ (Himanthalia elongata Himel1 dioecious)
CACGTCGGCGAGATGTACACCTCGGCGGCACCTTACGACCCCATCTTCTG GGTGATTCACCCCGAGGCAGAGCGGTTCTTGAGTTGGAGAAGAATTCTCG GCAGAGAAGGCATTGAAGGGTGAGATAAATCGAGAAACTCAAAAGTCGAC ATGCACGACGATATATGACGGCAATCCACCGCCCATGTTGTGTCCATCTT AACTTTACAAGGCGAAAAAAGCACTGTATGTATTTAAAACCGTCTAACCC TTGTAAACCCCAAACTGCCTGTATATATATCCAGATACGATTTCGACGAA ACCTGGGGCTATAGACATGTCGGAGGCATTGTAGGCGATACGGGTGCTGT GTGCGACTGGTCTACCGTGCGCCCGGGTACTCTGGACATGCCATCCTGCT TCAAAAAGACCTGTGGTGGTCACTATGCGACCGATACCTTGCCTTTC
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Coding sequence (CDS) from alignment at H-elongata_contig105491:475..921+

>mRNA_H-elongata_contig105491.453.1 ID=mRNA_H-elongata_contig105491.453.1|Name=mRNA_H-elongata_contig105491.453.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig105491:475..921+ (Himanthalia elongata Himel1 dioecious)
ATGTACACCTCGGCGGCACCTTACGACCCCATCTTCTGGGTGATTCACCC
CGAGGCAGAGCGGTTCTTGAGTTGGAGAAGAATTCTCGGCAGAGAAGGCA
TTGAAGGATGTACACCTCGGCGGCACCTTACGACCCCATCTTCTGGGTGA
TTCACCCCGAGGCAGAGCGGTTCTTGAGTTGGAGAAGAATTCTCGGCAGA
GAAGGCATTGAAGGATACGATTTCGACGAAACCTGGGGCTATAGACATGT
CGGAGGCATTGTAGGCGATACGGGTGCTGTGTGCGACTGGTCTACCGTGC
GCCCGGGTACTCTGGACATGCCATCCTGCTTCAAAAAGACCTGTGGTGGT
CACTATGCGACCGATACCTTGCCTTTCATACGATTTCGACGAAACCTGGG
GCTATAGACATGTCGGAGGCATTGTAGGCGATACGGGTGCTGTGTGCGAC
TGGTCTACCGTGCGCCCGGGTACTCTGGACATGCCATCCTGCTTCAAAAA
GACCTGTGGTGGTCACTATGCGACCGATACCTTGCCTTTC
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