mRNA_H-elongata_contig105447.452.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105447.452.1
Unique NamemRNA_H-elongata_contig105447.452.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig105447.452.1 vs. uniprot
Match: D7FTN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN3_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 3.520e-27
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:   28 AASRNDVETVRVLLNMHVDVNAKTPSGVTPLTCAIGGARRADSECARLLRASGGLERLVEDIIAPGSLLDVPIRRPRRAIDIKAECLGRMVYTGQF 315
            AA+      V  L      +  K  SG TPL+CA+GGA   D ECA LLRASGGL RLV+D I+ GS+LDV +RRPRRA+D +A+ LGRMVYTGQF
Sbjct:   27 AAAAGRAWCVEELFAQGCPIEGKHMSGATPLSCAMGGAGGPDGECATLLRASGGLVRLVKDTISSGSILDVSLRRPRRAMDDRADALGRMVYTGQF 122
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BLAST of mRNA_H-elongata_contig105447.452.1 vs. uniprot
Match: A0A7S2WVG6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVG6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 6.070e-11
Identity = 49/112 (43.75%), Postives = 62/112 (55.36%), Query Frame = 1 
Query:    7 GFTPLHIAASRNDVETVRVLLNM--HVDVNAKTPSGVTPLTCAIGGARRADSECAR-LLRASGGLERLVEDIIAPGSLLDVPIRRPR------RAIDIKAECLGRMVYTGQF 315
            G+TPLHIA SRN    V+VLLNM   +DVNAKT  G TPL  AI       S+ +R LL  +G  +   E      S++D+ I RP+      RA D +AE L R  Y GQ+
Sbjct:  146 GYTPLHIAVSRNHFLCVKVLLNMAMDIDVNAKTHKGFTPLYLAIV----CKSDMSRKLLEEAGAEDDDTETDTGFRSVVDIDITRPQMVPKVNRAADDRAENLERSPYFGQY 253
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BLAST of mRNA_H-elongata_contig105447.452.1 vs. uniprot
Match: A0A6T7CBK2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7CBK2_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 8.000e-9
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 1 
Query:    7 GFTPLHIAASRNDVETVRVLLNMHVDV--NAKTPSGVTPLTCAIGGARRADSECARLLRASGGLERLVEDIIAPGSLLDVPIRRP------RRAIDIKAECLGRMVYTGQF 315
            G+ PLH+AAS N  E V+VLL+M +DV  N+ T +G TPL   I  + RA +   ++++ +GG   + ++     S+LD+ IR+P       RA D  A  LGR  Y GQ+
Sbjct:  109 GYRPLHLAASYNYEECVKVLLHMKMDVELNSTTSNGYTPLY--IASSTRAMASY-KMIQEAGGEADMTKNYSGYRSILDINIRQPGAVPRRNRAPDDLARNLGRPSYFGQY 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105447.452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTN3_ECTSI3.520e-2757.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WVG6_9STRA6.070e-1143.75Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6T7CBK2_9STRA8.000e-938.74Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105447contigH-elongata_contig105447:95..1011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-11_001750.1
Exons2
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929587.4268467-CDS-H-elongata_contig105447:94..1931622929587.4268467-CDS-H-elongata_contig105447:94..193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105447 95..193 +
1691679081.28125-CDS-H-elongata_contig105447:94..1931691679081.28125-CDS-H-elongata_contig105447:94..193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105447 95..193 +
1622929587.438772-CDS-H-elongata_contig105447:792..10111622929587.438772-CDS-H-elongata_contig105447:792..1011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105447 793..1011 +
1691679081.2897153-CDS-H-elongata_contig105447:792..10111691679081.2897153-CDS-H-elongata_contig105447:792..1011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105447 793..1011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105447.452.1prot_H-elongata_contig105447.452.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105447 95..1011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105447.452.1

>prot_H-elongata_contig105447.452.1 ID=prot_H-elongata_contig105447.452.1|Name=mRNA_H-elongata_contig105447.452.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
GSGFTPLHIAASRNDVETVRVLLNMHVDVNAKTPSGVTPLTCAIGGARRA
DSECARLLRASGGLERLVEDIIAPGSLLDVPIRRPRRAIDIKAECLGRMV
YTGQF*
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mRNA from alignment at H-elongata_contig105447:95..1011+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105447.452.1 ID=mRNA_H-elongata_contig105447.452.1|Name=mRNA_H-elongata_contig105447.452.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=917bp|location=Sequence derived from alignment at H-elongata_contig105447:95..1011+ (Himanthalia elongata Himel1 dioecious)
GGATCGGGGTTCACGCCGCTCCACATTGCCGCCTCGCGAAATGACGTGGA
AACTGTACGGGTCCTCCTCAACATGCATGTAGATGTCAACGCCAAAACGG
TAAGCGCTGTGAAGAGCTGAGACTGGTGCCACCATTATTTGCAGGAAAAA
ACGCGACCAAATCGATGTGTACGAAGTGTGCTGTTGTTGTTTGTTGATGG
TGATCACGCATTTAGCAGAAGATCAACCGGATTTCATTGTCTTCTGCTCG
TGGTCAGCTGAACAGGGAAAATAAATTTCCCCTCTCTCCCTGTTCGCCTG
AGAATTTGGTCTCGCGAGACGGGCTCAGCACTCCCGTCCCGCGTCAGCCT
GCTCATTCTCCCAGCTCAGGCTGAATCTTCAAAATGACTTACTCCACTGA
TACGTTAATAACATGTTTCTGTCGTCAGTCTGTGAATTAGTTTCTGTCTA
CACCTGAGTTTTTGGCTGTGCATCAGTTGCCTGGGTGTTGGAAGTTATAT
TTCTGTGTTTATAATATATGTTTTCTGTGTAGTTGTCGTAGTCTGCCTAC
ATGATGTTCCTCTGAGCGTGTTGATTTGTGTCGGTCATAATTTTTACCAA
GTGTCTGATCGAAAATTACACTTTAGAAACAGACTCATCAGCCTCAGCAA
GGTTCCCCGTTGTTTTTTGTTTTACGATCTACATCGCTTTCTTCGCAGCC
AAGCGGTGTAACTCCACTAACATGTGCCATAGGAGGGGCTAGAAGAGCGG
ACTCTGAGTGTGCCAGACTCTTGCGCGCCTCGGGTGGTCTGGAGCGCCTT
GTGGAGGATATAATCGCTCCGGGTTCTCTGTTGGACGTTCCAATCCGCCG
CCCGCGTAGAGCTATCGATATCAAGGCGGAATGTTTGGGGAGGATGGTGT
ACACAGGGCAGTTCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig105447:95..1011+

>mRNA_H-elongata_contig105447.452.1 ID=mRNA_H-elongata_contig105447.452.1|Name=mRNA_H-elongata_contig105447.452.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig105447:95..1011+ (Himanthalia elongata Himel1 dioecious)
GGATCGGGGTTCACGCCGCTCCACATTGCCGCCTCGCGAAATGACGTGGA
AACTGTACGGGTCCTCCTCAACATGCATGTAGATGTCAACGCCAAAACGG
GATCGGGGTTCACGCCGCTCCACATTGCCGCCTCGCGAAATGACGTGGAA
ACTGTACGGGTCCTCCTCAACATGCATGTAGATGTCAACGCCAAAACGCC
AAGCGGTGTAACTCCACTAACATGTGCCATAGGAGGGGCTAGAAGAGCGG
ACTCTGAGTGTGCCAGACTCTTGCGCGCCTCGGGTGGTCTGGAGCGCCTT
GTGGAGGATATAATCGCTCCGGGTTCTCTGTTGGACGTTCCAATCCGCCG
CCCGCGTAGAGCTATCGATATCAAGGCGGAATGTTTGGGGAGGATGGTGT
ACACAGGGCAGTTCTAACCAAGCGGTGTAACTCCACTAACATGTGCCATA
GGAGGGGCTAGAAGAGCGGACTCTGAGTGTGCCAGACTCTTGCGCGCCTC
GGGTGGTCTGGAGCGCCTTGTGGAGGATATAATCGCTCCGGGTTCTCTGT
TGGACGTTCCAATCCGCCGCCCGCGTAGAGCTATCGATATCAAGGCGGAA
TGTTTGGGGAGGATGGTGTACACAGGGCAGTTCTAA
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