mRNA_H-elongata_contig105445.451.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105445.451.1
Unique NamemRNA_H-elongata_contig105445.451.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: D7FMV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV6_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 8.250e-61
Identity = 95/139 (68.35%), Postives = 106/139 (76.26%), Query Frame = 1
Query:    1 LKCKHFKLCPGCEFDRRFDETPIMVDSRSV----------ARGESNGGSGYERHAIHSWDPHGWRTVAKLAARPVSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGFRQENYEGDLRYVQV 387
            LKC+HFK C GC FDRRFDETPIMVDS S           ARG +   S +E H IH W PHGWRT+AKLAARPVS+W GVELGLY  GSH+V+GIP CRVHHPSVNLAV  LQ + KK+GVTGFRQEN +GDLRYVQ+
Sbjct:  112 LKCRHFKACAGCVFDRRFDETPIMVDSSSFMDSLHSTGARARGGAKAASDFEPHVIHPWKPHGWRTLAKLAARPVSKWRGVELGLYSAGSHNVIGIPDCRVHHPSVNLAVKTLQESTKKIGVTGFRQENLDGDLRYVQM 250          
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: A0A836CA04_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA04_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.720e-38
Identity = 70/138 (50.72%), Postives = 90/138 (65.22%), Query Frame = 1
Query:    1 LKCKHFKLCPGCEFDRRFDETPIMVDSRS--------VARGE--SNGGSGYERHAIHSWDPHGWRTVAKLAARPVSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGFRQENYEGDLRYVQ 384
            L+C HF  CPGC  DR FD TPIM ++ S         AR +  S G +   R++IH  +PHGWRT AKLA  P  ++GGV LGLY+ GSH V+ IP C+VHHP++N AV+VL  AA K  +TG+ ++  EG LRYVQ
Sbjct:  153 LQCPHFAECPGCAVDRAFDNTPIMSEASSFCDTQMALAARAKLGSRGEADAPRYSIHLGNPHGWRTHAKLAVAPTGKYGGVRLGLYKAGSHSVVAIPNCKVHHPAINEAVEVLTKAATKARITGYSEDRMEGMLRYVQ 290          
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: W7U2T6_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2T6_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.160e-27
Identity = 61/134 (45.52%), Postives = 78/134 (58.21%), Query Frame = 1
Query:    1 LKCKHFKLCPGCEFDRRFDETPIMVDSR----SVARGESNGGSGYERHAIH-SWDPHGWRTVAKLAARPVSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGFRQENYEGDLRYVQV 387
            L+C+HF  C GC +     ETP+M ++R     VAR        Y+  ++  +   HGWRT AKLA  P+S+WGG +LGLY  GSH V+ IP CRVHHPS+N AV VL  A   +    F   +  G LRYVQV
Sbjct:  257 LQCEHFGACSGCFYRSGLVETPVMENARVFFQRVAR--------YDNFSLGLATGVHGWRTQAKLAVAPLSKWGGCQLGLYEEGSHRVLPIPNCRVHHPSINRAVQVLTEATVTMKTRAFDPASLGGSLRYVQV 382          
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: L1J028_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J028_GUITC)

HSP 1 Score: 112 bits (281), Expect = 3.880e-27
Identity = 54/129 (41.86%), Postives = 79/129 (61.24%), Query Frame = 1
Query:    1 LKCKHFKLCPGCEFDRRFDETPIMVDSRSVARGESNGGSGYERHAIHSWDPHGWRTVAKLAARPVSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGFRQENYEGDLRYVQV 387
            L+C HF  CPGC  +    +TP + +++    G     +G E   ++    H WRT+AKLA  P +   G E+GLY+ G+HDV+ IP+CRVHHPS+N AV +LQ     VG+  + +++ EG LRYVQ+
Sbjct:    2 LRCVHFGACPGCIVEANLHDTPTINEAKMFL-GALTKQAGRE-FEVNMGQIHRWRTLAKLAVSPTNNEMGFEIGLYKSGTHDVLAIPRCRVHHPSINEAVSILQEEMLAVGIQAYDEKSSEGHLRYVQM 128          
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: A0A7S0H4U7_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H4U7_9EUKA)

HSP 1 Score: 111 bits (277), Expect = 1.010e-26
Identity = 59/129 (45.74%), Postives = 77/129 (59.69%), Query Frame = 1
Query:    1 LKCKHFKLCPGCEFDRRFDETPIMVDSRSVARGESNGGSGYERHAIHSWDPHGWRTVAKLAARPVSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGFRQENYEGDLRYVQV 387
            + CKHF  C GCEF+   D  PI   +RS A   S    G +   IH    H WRT AKLA R   + GGVE+GL+  GSH ++ IP C VHHPS+N AV  L+AA K   ++G+ +++  G LRYVQ+
Sbjct:    9 ITCKHFSKCSGCEFENAVDYPPI---ARSAADFFSQK-LGLKHFQIHMKTAHAWRTQAKLAVRRGKK-GGVEIGLFEAGSHRLVEIPDCEVHHPSINEAVRFLKAATKAARISGYDEKSCRGQLRYVQM 132          
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: A0A7S1TR61_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TR61_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.620e-24
Identity = 54/139 (38.85%), Postives = 83/139 (59.71%), Query Frame = 1
Query:    1 LKCKHFKLCPGCEFDRRFDETPIMVDSRSVARGES--NGGS--GYERHAIHSWDPHGWRTVAKLAARP--VSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGF----RQENYEGDLRYVQV 387
            + C+HF+ C GC  +   D  P +++++S    +   +GG+  G++   +H  +  GWRT+AKLA  P      GGV LGLY+ GSHDV  IP+C VHHP++N  V  +  A++K+GV+ F    R +  +G LRYV +
Sbjct:   18 ISCEHFEECGGCIANEDLDRVPAVLEAKSFCESQLAISGGTTPGFD---VHLGETEGWRTLAKLAVAPGGAGPKGGVRLGLYQTGSHDVFEIPRCEVHHPAINAVVQAITKASRKIGVSAFEEGTRGDEGKGQLRYVTI 153          
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: A0A482S2C7_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2C7_9ARCH)

HSP 1 Score: 99.4 bits (246), Expect = 1.560e-23
Identity = 51/142 (35.92%), Postives = 75/142 (52.82%), Query Frame = 1
Query:    1 LKCKHFKLCPGCEFDRRFDETPIMVDSRSVARGESNGGSGYERHAIHSWDPHGWRTVAKLAARPVSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGF-------------RQENYEGDLRYVQV 387
            L+CKHF  C GC     F  + +M  +R+  +             I   +   WRT AKLA +P+S+WGG++ GLY+  SHDV+ IP+C+VHHP +N A ++L+ A    GV G+             R    +G L+YVQ+
Sbjct:   19 LQCKHFDTCSGCTLKSNFTNSLVMQRARAFFKARD------VDFKIDMGNVTEWRTHAKLAVQPLSKWGGLKFGLYKEASHDVLPIPECKVHHPRINEAAELLRQACLDAGVKGYVEGTSREGGRTVGRGTLPQGGLKYVQL 154          
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: A0A5J4YN80_PORPP (Putative RNA methyltransferase pc1998 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN80_PORPP)

HSP 1 Score: 96.3 bits (238), Expect = 1.220e-20
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    1 LKCKHFKLCPGCEFDRRFDETPIMVDSRSVARGESNGGSGYERHAIHSWDPHGWRTVAKLAAR----PVSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGFRQENYEGDLRYVQ 384
            + C+HF  C GC  + R +  P+  + +S A+      S      IH  +  GWRT AKLA R    PV       +GL++ G+H V+ IP C+VHHPS+N+A +++ A   ++G+T + + +  G LRYVQ
Sbjct:  161 IACEHFGACSGCTLNERVNMPPLAEELQSYAKDALRYTSPV---LIHCGEERGWRTQAKLAVRGSPNPV-------MGLFKQGTHQVVPIPNCQVHHPSINVAAEIVNALVSQLGITAYNEISLRGQLRYVQ 282          
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: A0A7S0SFU4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SFU4_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 4.430e-19
Identity = 54/139 (38.85%), Postives = 74/139 (53.24%), Query Frame = 1
Query:    1 LKCKHFKLCPGCEFDRRFDETPIMVDSRS--VARG--ESNGGSGYERHAIHSWDPHGWRTVAKLAARPVSRWGG------VELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGFRQENYEGDLRYVQV 387
            L C HF +C GC      DE P +  +R+   ARG  +  G +G           HGWR  A+LAAR V    G      V LGL+  G+HD++ IP C VHHP +N A  ++  AA +VGV  + + +  G+LRYVQ+
Sbjct:   94 LDCPHFDVCSGCTMPVDLDEPPTLTRARAFFAARGVPDFQGTTGVV---------HGWRNRARLAARSVPDGSGRRSGKSVVLGLFARGTHDLVEIPDCVVHHPRINAAAAMVAEAAARVGVRAYDELDGTGELRYVQL 223          
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: C5XGA0_SORBI (Uncharacterized protein n=22 Tax=Panicoideae TaxID=147369 RepID=C5XGA0_SORBI)

HSP 1 Score: 91.3 bits (225), Expect = 6.810e-19
Identity = 46/129 (35.66%), Postives = 70/129 (54.26%), Query Frame = 1
Query:    1 LKCKHFKLCPGCEFDRRFDETPIMVDSRSVARGESNGGSGYERHAIHSWDPHGWRTVAKLAARPVSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGFRQENYEGDLRYVQV 387
            L C HF  C GC  +   D+ P++ +  +  +G   G   + R  +  W     R  AKLA R         +GLY+ G+HDV+ IP+CR HHPS+N AV +L+    ++G+  F ++   G+LRYVQ+
Sbjct:   89 LDCVHFGKCSGCTHEVDLDKPPVLQEVANFFKGHGVGDFTFSRGRLSQW-----RCRAKLAVRGTPE--NPLIGLYQEGTHDVIDIPECRAHHPSINAAVKLLRQGITELGIQPFDEDAGTGELRYVQM 210          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMV6_ECTSI8.250e-6168.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CA04_9STRA1.720e-3850.72S-adenosyl-L-methionine-dependent methyltransferas... [more]
W7U2T6_9STRA2.160e-2745.52Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
L1J028_GUITC3.880e-2741.86Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A7S0H4U7_9EUKA1.010e-2645.74Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S1TR61_9STRA1.620e-2438.85Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A482S2C7_9ARCH1.560e-2335.92Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A5J4YN80_PORPP1.220e-2036.36Putative RNA methyltransferase pc1998 n=1 Tax=Porp... [more]
A0A7S0SFU4_9CHLO4.430e-1938.85Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
C5XGA0_SORBI6.810e-1935.66Uncharacterized protein n=22 Tax=Panicoideae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105445contigH-elongata_contig105445:91..1480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.9
Seed ortholog evalue2.2e-50
Seed eggNOG ortholog2880.D7FMV6
EggNOG free text desc.RNA methyltransferase activity
EggNOG OGs2QTKF@2759,COG2265@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-09_002660.1
Exons3
Model size387
Cds size387
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105445.451.1prot_H-elongata_contig105445.451.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105445 91..1480 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929587.3191278-CDS-H-elongata_contig105445:90..1501622929587.3191278-CDS-H-elongata_contig105445:90..150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105445 91..150 -
1691679081.2494888-CDS-H-elongata_contig105445:90..1501691679081.2494888-CDS-H-elongata_contig105445:90..150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105445 91..150 -
1622929587.3643684-CDS-H-elongata_contig105445:642..8801622929587.3643684-CDS-H-elongata_contig105445:642..880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105445 643..880 -
1691679081.266237-CDS-H-elongata_contig105445:642..8801691679081.266237-CDS-H-elongata_contig105445:642..880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105445 643..880 -
1622929587.3804076-CDS-H-elongata_contig105445:1391..14801622929587.3804076-CDS-H-elongata_contig105445:1391..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105445 1392..1480 -
1691679081.2734685-CDS-H-elongata_contig105445:1391..14801691679081.2734685-CDS-H-elongata_contig105445:1391..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105445 1392..1480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105445.451.1

>prot_H-elongata_contig105445.451.1 ID=prot_H-elongata_contig105445.451.1|Name=mRNA_H-elongata_contig105445.451.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
LKCKHFKLCPGCEFDRRFDETPIMVDSRSVARGESNGGSGYERHAIHSWD
PHGWRTVAKLAARPVSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAV
DVLQAAAKKVGVTGFRQENYEGDLRYVQV
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mRNA from alignment at H-elongata_contig105445:91..1480-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105445.451.1 ID=mRNA_H-elongata_contig105445.451.1|Name=mRNA_H-elongata_contig105445.451.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1390bp|location=Sequence derived from alignment at H-elongata_contig105445:91..1480- (Himanthalia elongata Himel1 dioecious)
CTCAAGTGCAAGCACTTTAAACTCTGTCCTGGTTGTGAGTTCGACCGTCG GTTTGACGAGACGCCCATCATGGTGGATTCCAGGTCCGTGTCGATCCCTC GCTGTTAGCAGTGGGAGCTGACCTCGTGCGCGCGTTAGGATCGAACTCGG TTCGACGATCGGAACTCTCGGCCTGCGACATTAGAGTAATCAGTAATAGA CAGTAATAATTAGTATTTGATTCGTGTTTTGCGTGAGTGAGAAGGCGGAC GCCGACGACTAATGTCCCTGTGTTGTCCCCTTATTTTGGCGTTCAGCAAC TGGGGCAGCAGTATGAAGAAAGTAGTGTCTCGATTCCCTCTATTCGAGGA GGAGGATGAAATTATTTCATTCGAGGACGAAGGAGCCGGTAATAAGCGCG GGTGACAGGCAAGGCGTATGCTGGTGAACCGAGGCACGAAACGGTCTGTG GAAGCAGATTTGACTTCAACACCAAAGCCGACTTGCACATTCGCTCAGCG CCTCTCGTTTCTCGTCCACGCCTCCGCCGTTCACTCGCAAACCGACGCTC GTGATGCTCCCCAGCTCCTTCATGAACAACTTGCACGCCTCTTGGGCTAG GGCGAGGGGCGAATCGAACGGTGGATCGGGCTACGAGAGGCATGCTATCC ACTCCTGGGATCCCCACGGCTGGCGAACAGTGGCGAAGCTGGCGGCGAGA CCAGTTTCGAGGTGGGGAGGCGTTGAGCTGGGTCTTTACCGACTCGGCTC CCACGACGTCATGGGGATACCACAATGCAGGGTACACCACCCCTCCGTCA ATCTCGCCGTAGACGTCTTGCAAGCGGCCGCGAAGAAGGTGAAAATAATG GATGATATTCCTCCTAGCGGCTGACAGTTTATCCTCCCCCTGCGATTGGT CATAAGTGTGTCTGCGAGCAGGAAATAGTAACCGGCAGCAACACACTCCT AGCCGATTCGATTCGCAGCGCTTAATTTTGGTATCTCTTCGCGCGGTTCA CATCGACTTCGAGGCTGTTGTTCGCGCGCGCATGCGCGCGTATCGATGGA TCTCTTACGCTAACACACGTGGTATGATGCTAATATAAATAGGAATCCCT GGCTGTTCTACAGCAGGCAACCTCGTGCAAATTGCGTGTCAACTTTTTAA AACGCTACAAGAAAGCCTCCATCAGCCTGTCCAACTCCAACCTCTGGCGC GACATCAGTTTATCGTTCTCGGGCGCTTTTCACCATGTTTATATCTTGCT GGATTTGGAACGTCCGTTCTTCTTTCTTCCTCCAAGCGTCCACGAGCCTC CGAACCCCCTCTTTTACTGTACGGCGTAAGGTTGGTGTCACCGGCTTTCG ACAGGAGAATTACGAAGGAGACCTGCGCTACGTGCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig105445:91..1480-

>mRNA_H-elongata_contig105445.451.1 ID=mRNA_H-elongata_contig105445.451.1|Name=mRNA_H-elongata_contig105445.451.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig105445:91..1480- (Himanthalia elongata Himel1 dioecious)
CTCAAGTGCAAGCACTTTAAACTCTGTCCTGGTTGTGAGTTCGACCGTCG
GTTTGACGAGACGCCCATCATGGTGGATTCCAGGTCCGTCTCAAGTGCAA
GCACTTTAAACTCTGTCCTGGTTGTGAGTTCGACCGTCGGTTTGACGAGA
CGCCCATCATGGTGGATTCCAGGTCCGTGGCGAGGGGCGAATCGAACGGT
GGATCGGGCTACGAGAGGCATGCTATCCACTCCTGGGATCCCCACGGCTG
GCGAACAGTGGCGAAGCTGGCGGCGAGACCAGTTTCGAGGTGGGGAGGCG
TTGAGCTGGGTCTTTACCGACTCGGCTCCCACGACGTCATGGGGATACCA
CAATGCAGGGTACACCACCCCTCCGTCAATCTCGCCGTAGACGTCTTGCA
AGCGGCCGCGAAGAAGGGCGAGGGGCGAATCGAACGGTGGATCGGGCTAC
GAGAGGCATGCTATCCACTCCTGGGATCCCCACGGCTGGCGAACAGTGGC
GAAGCTGGCGGCGAGACCAGTTTCGAGGTGGGGAGGCGTTGAGCTGGGTC
TTTACCGACTCGGCTCCCACGACGTCATGGGGATACCACAATGCAGGGTA
CACCACCCCTCCGTCAATCTCGCCGTAGACGTCTTGCAAGCGGCCGCGAA
GAAGGTTGGTGTCACCGGCTTTCGACAGGAGAATTACGAAGGAGACCTGC
GCTACGTGCAGGTGGTTGGTGTCACCGGCTTTCGACAGGAGAATTACGAA
GGAGACCTGCGCTACGTGCAGGTG
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