mRNA_H-elongata_contig105422.449.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105422.449.1
Unique NamemRNA_H-elongata_contig105422.449.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig105422.449.1 vs. uniprot
Match: D7FYX6_ECTSI (Similar to activating transcription factor 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX6_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 2.940e-11
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 KPELAGLRGDAP-AECASKQVWKKQQRMIRNRESAALSRKRKRDRIESLEQQV 156
            KP+LA L+ +A  A    KQ WKKQQRMIRNRESAALSRKRKRD+IESLE+QV
Sbjct:  134 KPDLAMLQAEALLAPGVDKQAWKKQQRMIRNRESAALSRKRKRDKIESLEEQV 186
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BLAST of mRNA_H-elongata_contig105422.449.1 vs. uniprot
Match: A0A6H5JF82_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF82_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 8.090e-11
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 KPELAGLRGDAP-AECASKQVWKKQQRMIRNRESAALSRKRKRDRIESLEQQV 156
            KP++A L+ +A  A    KQ WKKQQRMIRNRESAALSRKRKRD+IESLE QV
Sbjct:  133 KPDIAMLQAEALLAPGVDKQAWKKQQRMIRNRESAALSRKRKRDKIESLEDQV 185
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BLAST of mRNA_H-elongata_contig105422.449.1 vs. uniprot
Match: A0A4D9D9D1_9STRA (BZIP domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9D1_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.930e-5
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   19 LRGDAPAECASKQVWKKQQRMIRNRESAALSRKRKRDRIESLEQQV 156
            +R DA    A+  + KKQ RMIRNRESAALSRKRKRD++E+LE +V
Sbjct:  236 MRRDAEDMAAAVALTKKQLRMIRNRESAALSRKRKRDQVEALELEV 281
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105422.449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYX6_ECTSI2.940e-1173.58Similar to activating transcription factor 6 n=1 T... [more]
A0A6H5JF82_9PHAE8.090e-1171.70BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A4D9D9D1_9STRA3.930e-563.04BZIP domain-containing protein n=4 Tax=Monodopsida... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105422contigH-elongata_contig105422:1857..2012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionBasic leucine zipper transcription factor
Ec32 orthologEc-19_002860.1
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929587.165789-CDS-H-elongata_contig105422:1856..20121622929587.165789-CDS-H-elongata_contig105422:1856..2012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105422 1857..2012 -
1691679081.2060483-CDS-H-elongata_contig105422:1856..20121691679081.2060483-CDS-H-elongata_contig105422:1856..2012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105422 1857..2012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105422.449.1prot_H-elongata_contig105422.449.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105422 1857..2012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105422.449.1

>prot_H-elongata_contig105422.449.1 ID=prot_H-elongata_contig105422.449.1|Name=mRNA_H-elongata_contig105422.449.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
KPELAGLRGDAPAECASKQVWKKQQRMIRNRESAALSRKRKRDRIESLEQ
QV
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mRNA from alignment at H-elongata_contig105422:1857..2012-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105422.449.1 ID=mRNA_H-elongata_contig105422.449.1|Name=mRNA_H-elongata_contig105422.449.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig105422:1857..2012- (Himanthalia elongata Himel1 dioecious)
AAGCCCGAGCTGGCGGGCTTGCGCGGTGACGCCCCAGCAGAGTGCGCAAG
CAAGCAGGTCTGGAAGAAGCAGCAGCGCATGATAAGGAACAGAGAATCAG
CAGCGCTCAGTCGGAAACGCAAGCGCGACCGTATCGAGTCCTTGGAGCAG
CAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig105422:1857..2012-

>mRNA_H-elongata_contig105422.449.1 ID=mRNA_H-elongata_contig105422.449.1|Name=mRNA_H-elongata_contig105422.449.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig105422:1857..2012- (Himanthalia elongata Himel1 dioecious)
AAGCCCGAGCTGGCGGGCTTGCGCGGTGACGCCCCAGCAGAGTGCGCAAG
CAAGCAGGTCTGGAAGAAGCAGCAGCGCATGATAAGGAACAGAGAATCAG
CAGCGCTCAGTCGGAAACGCAAGCGCGACCGTATCGAGTCCTTGGAGCAG
CAGGTAAAGCCCGAGCTGGCGGGCTTGCGCGGTGACGCCCCAGCAGAGTG
CGCAAGCAAGCAGGTCTGGAAGAAGCAGCAGCGCATGATAAGGAACAGAG
AATCAGCAGCGCTCAGTCGGAAACGCAAGCGCGACCGTATCGAGTCCTTG
GAGCAGCAGGTA
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