mRNA_H-elongata_contig105362.444.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig105362.444.1 vs. uniprot
Match: A0A6H5KW24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW24_9PHAE) HSP 1 Score: 190 bits (482), Expect = 1.250e-52 Identity = 123/195 (63.08%), Postives = 127/195 (65.13%), Query Frame = 1
Query: 34 RCTQSVREALSDILAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQHESAVGVDGGSVGGGG---------------RR--------------------GSTGGQYRRINQTSHESRKKPRPVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNLKV 513
+ SVREALSD+LAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQ ES+ G G RR G G R I Q VSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVN K+
Sbjct: 2900 KLADSVREALSDMLAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQQESSAGDGSGXXXXXXXXXXXXXXXXXXXXXRRTXXXXXXXXXXXXXXXXXXAGGLGALRRDIVQ-----------VSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKL 3083
BLAST of mRNA_H-elongata_contig105362.444.1 vs. uniprot
Match: A0A836CNJ7_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNJ7_9STRA) HSP 1 Score: 115 bits (289), Expect = 8.420e-27 Identity = 75/151 (49.67%), Postives = 100/151 (66.23%), Query Frame = 1
Query: 55 EALSDILAVAAGFLPPWVDALL-SGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQHESAVGVDGGSVGGGGRRGSTGGQYRRINQTSHESRKKPRPVSRSQLLQHAEQVMSMYTPSKA---VLEFRFAGEKGLGAGVTASFYSAVAAELQRR 495
+A++D LAVAA LPPW++A++ G+ FLLPL LR R+F+S +FGV RS+A+LQ ++A G S GG+ +GG+ R + VSR LL+HA+Q+M YT + VLEFRF GE+GLGAGVTASFYSAVAA + R
Sbjct: 126 QAMADELAVAANALPPWLEAIVCGGYGFLLPLGLRRRFFQSCSFGVNRSIAWLQTQAAAAAAGAS---GGQ--PSGGRLLRRDVVQ---------VSRDHLLEHAQQIMLAYTTPTSLASVLEFRFQGERGLGAGVTASFYSAVAAAMHAR 262
BLAST of mRNA_H-elongata_contig105362.444.1 vs. uniprot
Match: D8LBS8_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS8_ECTSI) HSP 1 Score: 108 bits (269), Expect = 5.120e-24 Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1
Query: 337 VSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNLKV 513
VSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVN K+
Sbjct: 1426 VSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNTKL 1484
BLAST of mRNA_H-elongata_contig105362.444.1 vs. uniprot
Match: A0A151K1J5_9HYME (E3 ubiquitin-protein ligase n=1 Tax=Trachymyrmex septentrionalis TaxID=34720 RepID=A0A151K1J5_9HYME) HSP 1 Score: 95.9 bits (237), Expect = 1.010e-19 Identity = 61/161 (37.89%), Postives = 90/161 (55.90%), Query Frame = 1
Query: 25 TSRRCTQSVREALSDILAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQHESAVGVDGGSVGGGGRRGSTGGQYRRINQTSHESRKKPRPVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNL 507
TS++ T + + + D LA+AAG LP W + L PFLLP + R YF AFG +RS+ +LQ + ++ G R ++R + + HE PR +LL AEQV+ ++ K++LE F GE+G G G T F++ VAAELQR+ +NL
Sbjct: 1948 TSKKITNKIVQQIQDPLALAAGALPNWCEELARSCPFLLPFETRRLYFSCTAFGASRSIVWLQTQRDAILERQRAPGLSPRRDDSHEFR-VGRLKHERVSVPRG---EKLLDWAEQVLKVHASRKSILEVAFVGEEGTGLGPTLEFFALVAAELQRKDLNL 2104
BLAST of mRNA_H-elongata_contig105362.444.1 vs. uniprot
Match: UPI00084EDDB7 (E3 ubiquitin-protein ligase HECTD1 isoform X2 n=1 Tax=Trachymyrmex septentrionalis TaxID=34720 RepID=UPI00084EDDB7) HSP 1 Score: 95.9 bits (237), Expect = 1.010e-19 Identity = 61/161 (37.89%), Postives = 90/161 (55.90%), Query Frame = 1
Query: 25 TSRRCTQSVREALSDILAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQHESAVGVDGGSVGGGGRRGSTGGQYRRINQTSHESRKKPRPVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNL 507
TS++ T + + + D LA+AAG LP W + L PFLLP + R YF AFG +RS+ +LQ + ++ G R ++R + + HE PR +LL AEQV+ ++ K++LE F GE+G G G T F++ VAAELQR+ +NL
Sbjct: 1988 TSKKITNKIVQQIQDPLALAAGALPNWCEELARSCPFLLPFETRRLYFSCTAFGASRSIVWLQTQRDAILERQRAPGLSPRRDDSHEFR-VGRLKHERVSVPRG---EKLLDWAEQVLKVHASRKSILEVAFVGEEGTGLGPTLEFFALVAAELQRKDLNL 2144
BLAST of mRNA_H-elongata_contig105362.444.1 vs. uniprot
Match: UPI00084F35E1 (E3 ubiquitin-protein ligase HECTD1 isoform X1 n=1 Tax=Trachymyrmex septentrionalis TaxID=34720 RepID=UPI00084F35E1) HSP 1 Score: 95.9 bits (237), Expect = 1.010e-19 Identity = 61/161 (37.89%), Postives = 90/161 (55.90%), Query Frame = 1
Query: 25 TSRRCTQSVREALSDILAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQHESAVGVDGGSVGGGGRRGSTGGQYRRINQTSHESRKKPRPVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNL 507
TS++ T + + + D LA+AAG LP W + L PFLLP + R YF AFG +RS+ +LQ + ++ G R ++R + + HE PR +LL AEQV+ ++ K++LE F GE+G G G T F++ VAAELQR+ +NL
Sbjct: 2000 TSKKITNKIVQQIQDPLALAAGALPNWCEELARSCPFLLPFETRRLYFSCTAFGASRSIVWLQTQRDAILERQRAPGLSPRRDDSHEFR-VGRLKHERVSVPRG---EKLLDWAEQVLKVHASRKSILEVAFVGEEGTGLGPTLEFFALVAAELQRKDLNL 2156
BLAST of mRNA_H-elongata_contig105362.444.1 vs. uniprot
Match: A0A6P3WWV4_DINQU (E3 ubiquitin-protein ligase n=1 Tax=Dinoponera quadriceps TaxID=609295 RepID=A0A6P3WWV4_DINQU) HSP 1 Score: 95.1 bits (235), Expect = 1.880e-19 Identity = 61/161 (37.89%), Postives = 90/161 (55.90%), Query Frame = 1
Query: 25 TSRRCTQSVREALSDILAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQHESAVGVDGGSVGGGGRRGSTGGQYRRINQTSHESRKKPRPVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNL 507
TS++ T + + + D LA+AAG LP W + L PFLLP + R YF AFG +RS+ +LQ + ++ G R ++R + + HE PR +LL AEQV+ ++ K++LE F GE+G G G T F++ VAAELQRR ++L
Sbjct: 1990 TSKKITNKIVQQIQDPLALAAGALPNWCEELARSCPFLLPFETRRLYFSCTAFGASRSIVWLQTQRDAILERQRAPGLSPRRDDSHEFR-VGRLKHERVSVPRG---DKLLDWAEQVLKVHASRKSILEVAFVGEEGTGLGPTLEFFALVAAELQRRDLDL 2146
BLAST of mRNA_H-elongata_contig105362.444.1 vs. uniprot
Match: A0A6P3WX18_DINQU (E3 ubiquitin-protein ligase n=2 Tax=Dinoponera quadriceps TaxID=609295 RepID=A0A6P3WX18_DINQU) HSP 1 Score: 95.1 bits (235), Expect = 1.880e-19 Identity = 61/161 (37.89%), Postives = 90/161 (55.90%), Query Frame = 1
Query: 25 TSRRCTQSVREALSDILAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQHESAVGVDGGSVGGGGRRGSTGGQYRRINQTSHESRKKPRPVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNL 507
TS++ T + + + D LA+AAG LP W + L PFLLP + R YF AFG +RS+ +LQ + ++ G R ++R + + HE PR +LL AEQV+ ++ K++LE F GE+G G G T F++ VAAELQRR ++L
Sbjct: 2002 TSKKITNKIVQQIQDPLALAAGALPNWCEELARSCPFLLPFETRRLYFSCTAFGASRSIVWLQTQRDAILERQRAPGLSPRRDDSHEFR-VGRLKHERVSVPRG---DKLLDWAEQVLKVHASRKSILEVAFVGEEGTGLGPTLEFFALVAAELQRRDLDL 2158
BLAST of mRNA_H-elongata_contig105362.444.1 vs. uniprot
Match: A0A7R9JSK4_TIMGE (E3 ubiquitin-protein ligase n=1 Tax=Timema genevievae TaxID=629358 RepID=A0A7R9JSK4_TIMGE) HSP 1 Score: 88.6 bits (218), Expect = 3.560e-17 Identity = 58/161 (36.02%), Postives = 88/161 (54.66%), Query Frame = 1
Query: 25 TSRRCTQSVREALSDILAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQHESAVGVDGGSVGGGGRRGSTGGQYRRINQTSHESRKKPRPVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSVNL 507
TS++ T + + + D L +++G LP W + L PFL P + R F AFG +RS+ +LQ + V ++ G R ++R + + HE K PR + LL A QVM ++ K++LE F GE+G G G T FY+ VAAELQR+ +N+
Sbjct: 2121 TSKKITNKLLQQIQDPLVLSSGALPSWCEELNHSCPFLFPFETRQLCFNCTAFGASRSIVWLQTQRDVTLERQRAPGLSPRREDPHEFR-VGRLKHERVKVPRGEN---LLDWALQVMRIHADRKSILEVEFQGEEGTGLGPTLEFYALVAAELQRKDLNM 2277
BLAST of mRNA_H-elongata_contig105362.444.1 vs. uniprot
Match: A0A158P7N2_ANGCA (E3 ubiquitin-protein ligase n=2 Tax=Strongylida TaxID=6308 RepID=A0A158P7N2_ANGCA) HSP 1 Score: 86.7 bits (213), Expect = 1.650e-16 Identity = 59/166 (35.54%), Postives = 88/166 (53.01%), Query Frame = 1
Query: 28 SRRCTQSVREALSDILAVAAGFLPPWVDALLSGFPFLLPLDLRLRYFRSLAFGVTRSVAYLQHESAVGVDGGSVGGGGRRGSTGGQYR--------RINQTSHESRKKPRPVSRSQLLQHAEQVMSMYTPSKAVLEFRFAGEKGLGAGVTASFYSAVAAELQRRSV 501
S + T + + LSD L VAA +P W + L+ G+P L + + Y ++ AFGV+R++ +LQ +D G +G+T R R+ + HE K R S LL+ A +VM + KAVLE + GE+G G G T FY+ VAAELQR+++
Sbjct: 1708 SDKLTLKLTQELSDALVVAARAMPDWCERLIYGYPCLFSAETKNMYMQATAFGVSRTIVWLQSRRDAALDRAR---GAAQGTTSSAARPHDRYQEYRVGRLKHERIKVTR--SEEHLLEQAVRVMRFHADRKAVLEIEYVGEEGTGLGPTLEFYALVAAELQRKAL 1868 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105362.444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig105362.444.1 >prot_H-elongata_contig105362.444.1 ID=prot_H-elongata_contig105362.444.1|Name=mRNA_H-elongata_contig105362.444.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp FSQQPPRPTSRRCTQSVREALSDILAVAAGFLPPWVDALLSGFPFLLPLDback to top mRNA from alignment at H-elongata_contig105362:889..1851+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig105362.444.1 ID=mRNA_H-elongata_contig105362.444.1|Name=mRNA_H-elongata_contig105362.444.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=963bp|location=Sequence derived from alignment at H-elongata_contig105362:889..1851+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig105362:889..1851+ >mRNA_H-elongata_contig105362.444.1 ID=mRNA_H-elongata_contig105362.444.1|Name=mRNA_H-elongata_contig105362.444.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig105362:889..1851+ (Himanthalia elongata Himel1 dioecious)back to top |