mRNA_H-elongata_contig105342.443.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig105342.443.1 vs. uniprot
Match: D7G201_ECTSI (Sel1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G201_ECTSI) HSP 1 Score: 276 bits (705), Expect = 6.120e-81 Identity = 202/380 (53.16%), Postives = 244/380 (64.21%), Query Frame = 1
Query: 1 YFFGRGERLSLKKAFDAYSWAAGHGAVEAMVALASMYKAGT-HVEANKEKCYFWLERAVDKGYPPAMNELAVVLLGEADHLEGTHPELKSSTL--------PTEG---------------HETGNSDEDAELIQQMHEEAPGLSGRDRP---EAGPEDDYQESRGDRKRGEVAGWTPEQDRLFEQVMEKRKQAMRLLQEAAKTGFTDAMTNLGNMQEAMGYFDDAQNWYSMAAEPSESANNPRAQNYLGMLYFEGRGVTKDLDEAVKWFRRSAQQGNAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAYALARDALHSFAAAARQAP---------ACIHDTGLKIEDSSQGIMKPGDSSSELSRQV 1032
+FFGRGE ++ KAF+AY+WAA G EAM +A MY+ G+ V+A+ E+C WLERAVDKGY PAMN+LA LL +AD E HPELK+ PT+ H +G S+E + G + + +E + + PE +LFEQVMEKRK++M+LLQ+AAKTG T+AMTNLGNMQEAMGYF+DA++WYS+AA PSESANNPRAQNYLG L++EGRGVTKD DEAVKWFR SA+QG Q XXXXXXXXXXXXXXXXXXXXXXXXXXXX LAY LARDALH+ AAAARQAP A + TGL+ ED S+GIMKP SS+ S +
Sbjct: 405 FFFGRGENPNMSKAFEAYAWAAERGCAEAMYMMAWMYRVGSGSVDADAEQCQRWLERAVDKGYAPAMNDLATTLLEQADRTERAHPELKADVAAADVIADSPTDDADRGLGATRPPTPDDHTSGGSEEXXXXXXXXXXXXXXXXXXXXXXXXDGGRQVEAEE--------DASSLPPELAQLFEQVMEKRKRSMQLLQDAAKTGHTEAMTNLGNMQEAMGYFEDARSWYSLAAHPSESANNPRAQNYLGTLFYEGRGVTKDRDEAVKWFRLSARQGFPQACXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGSISATNSLAYLLARDALHALAAAARQAPPGLDQRNLSAGVAGTGLQFEDPSRGIMKPAGLSSQASSKA 776
BLAST of mRNA_H-elongata_contig105342.443.1 vs. uniprot
Match: A0A836CC33_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC33_9STRA) HSP 1 Score: 128 bits (322), Expect = 6.310e-29 Identity = 96/285 (33.68%), Postives = 134/285 (47.02%), Query Frame = 1
Query: 1 YFFGRGERLSLKKAFDAYSWAAGHGAVEAMVALASMYKAGTHVEANKEKCYFWLERAVDKGYPPAMNELAVVLLGEADHLEGTHPELKSS-----TLPTEGHETGNSDEDAELIQQMHEEAPGLSGRDRPEAGPED---DYQESRGDRKRGEVAGWTPEQDRLFEQVMEKRKQAMRLLQE-------------------------AAKTGFTDAMTNLGNMQEAMGYFDDAQNWYSMAAEPSES-ANNPRAQNYLGMLYFEGRGVTKDLDEAVKWFRRSAQQGNA 753
+++GR + +KA AY WAA G EA LA MYK G V A+ E+C WLERAV++GY PAMNELA++LL EA+ + PE++++ + + G+ D + G +R +PE F E RK+A LLQ AA+ G DAM +LG++ E G A+ WY +AA P + ANN RAQN+LG +Y GRG +D EA +WF+R+A+QG A
Sbjct: 488 WYYGREGPPNFEKAHAAYLWAAERGFGEAQYMLAWMYKHGHFVTADAERCTHWLERAVERGYAPAMNELALLLLEEAEGISAAWPEVQAAFDELASKAADADAAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXARDVRGSAAAALGATQRRLQRTLSPEAAAKFAAAAELRKRAQSLLQRVRLCVRREVRCVRQLCAAAVPAAVSAARLGHADAMASLGSLLEEAGRVRAARRWYELAAAPGDGGANNARAQNFLGRMYHSGRGAARDPREAARWFKRAAKQGLA 772
BLAST of mRNA_H-elongata_contig105342.443.1 vs. uniprot
Match: UPI00068C1C02 (sel1 repeat family protein n=1 Tax=Terasakiella pusilla TaxID=64973 RepID=UPI00068C1C02) HSP 1 Score: 60.1 bits (144), Expect = 5.190e-7 Identity = 40/112 (35.71%), Postives = 58/112 (51.79%), Query Frame = 1
Query: 427 GEVAGWTPEQDRLFEQVMEKRKQAMRLLQEAAKTGFTDAMTNLGNM--QEAMGYFDDAQNWYSMAAEPSESANNPRAQNYLGMLYFEGRGVTKDLDEAVKWFRRSAQQGNAQ 756
G V G E++ Q+ + Q + L E AK G +A LG ++ + Y AQ WY +AA N+ AQ LG LY GRGV +L A+ WFR++A+ G+A+
Sbjct: 19 GYVVGKGWEEEARVGQIQLSKSQLVALWSEQAKAGDPEAQYQLGRYYDRDRVDYL-TAQKWYRVAAT---RGNHAGAQYKLGQLYLNGRGVENNLPNAMMWFRKAAEGGDAR 126
BLAST of mRNA_H-elongata_contig105342.443.1 vs. uniprot
Match: A0A3E0X448_9GAMM (Uncharacterized protein n=1 Tax=Alkalilimnicola ehrlichii TaxID=351052 RepID=A0A3E0X448_9GAMM) HSP 1 Score: 55.1 bits (131), Expect = 2.490e-6 Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 1
Query: 610 MAAEPSESANNPRAQNYLGMLYFEGRGVTKDLDEAVKWFRRSAQQGN 750
M AE E NP AQ LG +YF G+GV DLDEA++W RR+A+QG+
Sbjct: 1 MRAEAQEG--NPDAQYALGYMYFNGQGVEPDLDEAMEWIRRAAEQGH 45
BLAST of mRNA_H-elongata_contig105342.443.1 vs. uniprot
Match: A0A432QW27_9PROT (Beta-lactamase n=1 Tax=Hydrogenimonas sp. TaxID=2231112 RepID=A0A432QW27_9PROT) HSP 1 Score: 55.1 bits (131), Expect = 3.120e-6 Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1
Query: 640 NPRAQNYLGMLYFEGRGVTKDLDEAVKWFRRSAQQGN 750
NP AQ YLGMLY+EG GV KD++ A WF+++A+QG+
Sbjct: 33 NPEAQYYLGMLYYEGFGVEKDIETAKYWFKKAARQGS 69
BLAST of mRNA_H-elongata_contig105342.443.1 vs. uniprot
Match: A0A7C4L760_9SPIR (Sel1 repeat family protein n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A7C4L760_9SPIR) HSP 1 Score: 58.5 bits (140), Expect = 5.330e-6 Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query: 631 SANNPRAQNYLGMLYFEGRGVTKDLDEAVKWFRRSAQQGN 750
S+ +P AQN LG+ YF G GV KDL+EAV+WFR+SA+Q N
Sbjct: 36 SSGDPEAQNSLGVNYFYGDGVEKDLEEAVRWFRKSAEQNN 75
BLAST of mRNA_H-elongata_contig105342.443.1 vs. uniprot
Match: A0A800MBT7_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A800MBT7_9BACT) HSP 1 Score: 53.5 bits (127), Expect = 6.020e-6 Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1
Query: 634 ANNPRAQNYLGMLYFEGRGVTKDLDEAVKWFRRSAQQGN 750
A + AQ +LG Y +G GV KDLDEA+KW R+SA+QGN
Sbjct: 14 AGDASAQLFLGQSYQKGSGVEKDLDEAIKWLRKSAEQGN 52
BLAST of mRNA_H-elongata_contig105342.443.1 vs. uniprot
Match: A0A7X1SRF7_9PROT (Uncharacterized protein n=2 Tax=Gluconobacter aidae TaxID=2662454 RepID=A0A7X1SRF7_9PROT) HSP 1 Score: 58.5 bits (140), Expect = 7.130e-6 Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = 1
Query: 472 QVMEKRKQAMRLLQEAAKTGFTDAMTNLGNMQEAMGYFDDAQNWYSMAAEPSESANNPRAQNYLGMLYFEGRGVTKDLDEAVKWFRRSAQQGNAQ 756
Q E+R++A+ +Q+A+ G +A LG + E G D Y M A + N+P AQ +G+ Y++GRGV +D+ +A W R++AQ G +
Sbjct: 226 QTPEERRKAVAFIQQASTDGLPEAELMLGTILEYEGGKDAQAFGYFMKAA---TQNHPAAQMKVGVAYYQGRGVERDVSKAETWLRKAAQGGEIE 317
BLAST of mRNA_H-elongata_contig105342.443.1 vs. uniprot
Match: A0A7V7Z8C6_9BURK (Sel1 repeat family protein n=1 Tax=Janthinobacterium sp. FT58W TaxID=2654254 RepID=A0A7V7Z8C6_9BURK) HSP 1 Score: 57.0 bits (136), Expect = 8.940e-6 Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 1
Query: 463 LFEQVMEKRKQAMRLLQEAAKTGFTDAMTNLGNMQEAMGYFDDAQNWYSMAAEPSESANNPRAQNYLGMLYFEGRGVTKDLDEAVKWFRRSAQQGNAQ 756
+++ E+R A+RL ++AA+TG +A LG M G + A +WY +AA+ + RA +G+L G GV+KD A W S++ GN Q
Sbjct: 70 VYQPRPERRDDALRLFEQAARTGDAEAAFELGQMLRP-GAPEQAWSWYRLAAQQQHA----RAALMMGLLAANGEGVSKDATTAAHWLEVSSKLGNPQ 162
BLAST of mRNA_H-elongata_contig105342.443.1 vs. uniprot
Match: A0A2A6JME5_9HYPH (Uncharacterized protein n=3 Tax=Rhizobium TaxID=379 RepID=A0A2A6JME5_9HYPH) HSP 1 Score: 55.5 bits (132), Expect = 1.350e-5 Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 1
Query: 619 EPSESANNPRAQNYLGMLYFEGRGVTKDLDEAVKWFRRSAQQ 744
+P +A +P+AQ LG L+ GRGVTKD D+AV WFR++A+Q
Sbjct: 47 QPQAAAGDPQAQTALGSLFASGRGVTKDDDQAVAWFRKAAEQ 88 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105342.443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig105342.443.1 >prot_H-elongata_contig105342.443.1 ID=prot_H-elongata_contig105342.443.1|Name=mRNA_H-elongata_contig105342.443.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=350bp YFFGRGERLSLKKAFDAYSWAAGHGAVEAMVALASMYKAGTHVEANKEKCback to top mRNA from alignment at H-elongata_contig105342:193..1960- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig105342.443.1 ID=mRNA_H-elongata_contig105342.443.1|Name=mRNA_H-elongata_contig105342.443.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1768bp|location=Sequence derived from alignment at H-elongata_contig105342:193..1960- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig105342:193..1960- >mRNA_H-elongata_contig105342.443.1 ID=mRNA_H-elongata_contig105342.443.1|Name=mRNA_H-elongata_contig105342.443.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2100bp|location=Sequence derived from alignment at H-elongata_contig105342:193..1960- (Himanthalia elongata Himel1 dioecious)back to top |