mRNA_H-elongata_contig105321.442.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105321.442.1
Unique NamemRNA_H-elongata_contig105321.442.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig105321.442.1 vs. uniprot
Match: D7FZP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZP1_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.150e-37
Identity = 73/100 (73.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query:    1 FTASFVSNPLNIHIVQTLNAQPSQQNTLSILMTVPWSFKLVYGFLSDVLPIGGLRRKPYLIAGYLTSSVCYVALAMSPQVVAHSLVLGSVLFLATMGQIM 300
            F  SFV+NPLNI+IVQTLNAQPSQQNTL +LMTVPWSFKL+YGFLSDV PI GLRRKPYL  GYL SS CY+ LA++ +V   SL    +LFLATMGQIM
Sbjct:  106 FLGSFVANPLNIYIVQTLNAQPSQQNTLVVLMTVPWSFKLIYGFLSDVCPIRGLRRKPYLAFGYLLSSFCYLVLALTAEVTIQSL--SGLLFLATMGQIM 203          
BLAST of mRNA_H-elongata_contig105321.442.1 vs. uniprot
Match: A0A836CBB7_9STRA (Folate-biopterin transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBB7_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.170e-27
Identity = 54/100 (54.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:    1 FTASFVSNPLNIHIVQTLNAQPSQQNTLSILMTVPWSFKLVYGFLSDVLPIGGLRRKPYLIAGYLTSSVCYVALAMSPQVVAHSLVLGSVLFLATMGQIM 300
            F  SF+  PL + +VQ+LNAQP+QQNT+ +L+++PWSFKL+YGF+SDVLP+GGLRRKPY   G+   S C++ LA   +    SL +  +LF+AT+GQIM
Sbjct:   57 FLGSFIGTPLTVFLVQSLNAQPAQQNTIGVLLSIPWSFKLLYGFVSDVLPVGGLRRKPYFALGFALHSACFLLLAALEKPTFSSLAV--LLFVATIGQIM 154          
BLAST of mRNA_H-elongata_contig105321.442.1 vs. uniprot
Match: A0A482UNW4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UNW4_9ARCH)

HSP 1 Score: 94.4 bits (233), Expect = 2.250e-22
Identity = 48/96 (50.00%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    7 ASFVSNPLNIHIVQTLNAQPSQQNTLSILMTVPWSFKLVYGFLSDVLPIGGLRRKPYLIAGYLTSSVCYVALAMSPQVVAHSLV-LGSVLFLATMG 291
            +SF++ P+NI++V TLNA+P  QNT+ IL T+PWS KLV+GFLSD +PI GL RKPYL  G +  S  Y+  ++   V  H++V L + +F+AT+G
Sbjct:   43 SSFLATPMNIYLVNTLNAEPQMQNTIGILQTLPWSMKLVFGFLSDTVPIFGLHRKPYLAIGAMLYSFAYMTYSV---VGLHNVVFLSACVFMATIG 135          
BLAST of mRNA_H-elongata_contig105321.442.1 vs. uniprot
Match: A0A7S2XY88_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY88_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.970e-22
Identity = 50/100 (50.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    1 FTASFVSNPLNIHIVQTLNAQPSQQNTLSILMTVPWSFKLVYGFLSDVLPIGGLRRKPYLIAGYLTSSVCYVALAMSPQVVAHSLVLGSVLFLATMGQIM 300
            F  +F S PL I +V  L+AQP QQN ++IL T+PW+FKL+YGFLSD++PIGGL RKPY++ GY+  + CY+ LA    +     VL  ++F+ T+G IM
Sbjct:   65 FLDAFFSTPLYIFLVNDLDAQPWQQNAIAILTTLPWTFKLLYGFLSDLVPIGGLHRKPYMMLGYVLVASCYLILASLQNITFP--VLAVLMFVETVGLIM 162          
BLAST of mRNA_H-elongata_contig105321.442.1 vs. uniprot
Match: A0A7S1TWA3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWA3_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.330e-21
Identity = 48/97 (49.48%), Postives = 73/97 (75.26%), Query Frame = 1
Query:   10 SFVSNPLNIHIVQTLNAQPSQQNTLSILMTVPWSFKLVYGFLSDVLPIGGLRRKPYLIAGYLTSSVCYVALAMSPQVVAHSLVLGSVLFLATMGQIM 300
            SF++ PL +++VQ L+A+P+ QNTL++L T+PWSFKL++GFLSDV P+ G RRKPY+I G L  +V ++ LA   +    SL   +++++ATMG+IM
Sbjct:  159 SFITTPLQVYMVQDLDAEPAAQNTLNVLTTLPWSFKLLFGFLSDVQPVFGARRKPYMIIGSLMHAVSFLMLAALGEPSMQSL--STLMWVATMGEIM 253          
BLAST of mRNA_H-elongata_contig105321.442.1 vs. uniprot
Match: A0A7R9U5H3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5H3_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.480e-21
Identity = 50/101 (49.50%), Postives = 75/101 (74.26%), Query Frame = 1
Query:    4 TASFVSNPLNIHIVQTLNAQPSQQNTLSILMTVPWSFKLVYGFLSDVLPIGGLRRKPYLIAGYLTSSVCYVALAM--SPQVVAHSLVLGSVLFLATMGQIM 300
            + SF++ PL +++V+ L A+P  QNT+SILM++PWSFKL++GF+SDV PI G RRKPY+I G +  +V Y++LA+  +P +     VL  + ++ATMGQIM
Sbjct:  154 SVSFITTPLQVYMVEELGAEPEAQNTISILMSLPWSFKLLFGFVSDVNPILGWRRKPYMILGSMAHAVAYLSLALMGTPGIQ----VLSFLTWVATMGQIM 250          
BLAST of mRNA_H-elongata_contig105321.442.1 vs. uniprot
Match: A0A7S3GWJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWJ9_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.500e-21
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   10 SFVSNPLNIHIVQTLNAQPSQQNTLSILMTVPWSFKLVYGFLSDVLPIGGLRRKPYLIAGYLTSSVCYVALAMSPQVVAHSLVLGSVLFLATMGQIM 300
            SF+  PLN+++V+ LNA+PS QNT+ IL T+PWS KLV+GFLSD +PI G++RKPYL  G +  S  ++A A+S   V     L   +F+ T+G IM
Sbjct:   53 SFIQTPLNVYMVKVLNAEPSLQNTIGILQTLPWSLKLVFGFLSDSVPIYGMQRKPYLAIGTVLYSFAFIAYAISG--VDSVTFLALCIFVGTLGLIM 147          
BLAST of mRNA_H-elongata_contig105321.442.1 vs. uniprot
Match: A0A835Z8G1_9STRA (Biopterin transport-related protein BT1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G1_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.710e-18
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   10 SFVSNPLNIHIVQTLNAQPSQQNTLSILMTVPWSFKLVYGFLSDVLPIGGLRRKPYLIAGYLTSSVCYVALA 225
            SF+  P++ ++V  L A PSQQN +  L  +PWSFKLVYGF+SD  PIGG+RRKPY IAG+   S+C + LA
Sbjct:   24 SFLRTPVSYYLVHELGASPSQQNVVVTLAMLPWSFKLVYGFISDNFPIGGMRRKPYFIAGWFIYSMCNLLLA 95          
BLAST of mRNA_H-elongata_contig105321.442.1 vs. uniprot
Match: A0A6V1WMI5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WMI5_HETAK)

HSP 1 Score: 88.6 bits (218), Expect = 4.120e-18
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    1 FTASFVSNPLNIHIVQTLNAQPSQQNTLSILMTVPWSFKLVYGFLSDVLPIGGLRRKPYLIAGYLTSSVCYVALAMSPQVVAHSLVLGSVLFLATMGQIM 300
            F  +F+S PL  ++V  L+A P+QQ+ +  + ++PWSFKL YGFLSD +PI G+RRKPY I G+    +C++ LA   Q     L   S+LFL T+G +M
Sbjct:   77 FALNFLSTPLTYYMVHVLDASPAQQSVVRTMQSLPWSFKLAYGFLSDCVPIRGMRRKPYFILGWTIYLLCHLTLAALIQPSIGPLT--SLLFLGTVGYMM 174          
BLAST of mRNA_H-elongata_contig105321.442.1 vs. uniprot
Match: D7G1P4_ECTSI (Biopterin transport-related protein BT1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P4_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 2.140e-15
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 FTASFVSNPLNIHIVQTLNAQPSQQNTLSILMTVPWSFKLVYGFLSDVLPIGGLRRKPYLIAGYL 195
            F   F++ P++ ++V  + A P QQN +  L  +PWSFKLVYGF+SD  PIGG+RRKPY I G+L
Sbjct:   87 FAIRFLTTPISYYMVNVIGASPGQQNIMLTLAQLPWSFKLVYGFISDNFPIGGMRRKPYFIMGWL 151          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105321.442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZP1_ECTSI1.150e-3773.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CBB7_9STRA1.170e-2754.00Folate-biopterin transporter n=1 Tax=Tribonema min... [more]
A0A482UNW4_9ARCH2.250e-2250.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2XY88_9STRA5.970e-2250.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1TWA3_9STRA1.330e-2149.48Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U5H3_9STRA2.480e-2149.50Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3GWJ9_9STRA2.500e-2149.48Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A835Z8G1_9STRA3.710e-1855.56Biopterin transport-related protein BT1 n=1 Tax=Tr... [more]
A0A6V1WMI5_HETAK4.120e-1845.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7G1P4_ECTSI2.140e-1552.31Biopterin transport-related protein BT1 n=2 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105321contigH-elongata_contig105321:161..1013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue6.3e-31
Seed eggNOG ortholog2880.D7FZP1
EggNOG free text desc.BT1 family
EggNOG OGs29S8M@1,2RXD7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFolate-biopterin transporter
Ec32 orthologEc-08_001180.1
Exons2
Model size357
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929586.4679534-CDS-H-elongata_contig105321:160..4261622929586.4679534-CDS-H-elongata_contig105321:160..426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105321 161..426 +
1691679080.80998-CDS-H-elongata_contig105321:160..4261691679080.80998-CDS-H-elongata_contig105321:160..426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105321 161..426 +
1622929586.4825375-CDS-H-elongata_contig105321:922..10131622929586.4825375-CDS-H-elongata_contig105321:922..1013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105321 923..1013 +
1691679080.820225-CDS-H-elongata_contig105321:922..10131691679080.820225-CDS-H-elongata_contig105321:922..1013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105321 923..1013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105321.442.1prot_H-elongata_contig105321.442.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105321 161..1013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105321.442.1

>prot_H-elongata_contig105321.442.1 ID=prot_H-elongata_contig105321.442.1|Name=mRNA_H-elongata_contig105321.442.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
FTASFVSNPLNIHIVQTLNAQPSQQNTLSILMTVPWSFKLVYGFLSDVLP
IGGLRRKPYLIAGYLTSSVCYVALAMSPQVVAHSLVLGSVLFLATMGQIM
GDVMADTLVSTTVLSIVN*
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mRNA from alignment at H-elongata_contig105321:161..1013+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105321.442.1 ID=mRNA_H-elongata_contig105321.442.1|Name=mRNA_H-elongata_contig105321.442.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=853bp|location=Sequence derived from alignment at H-elongata_contig105321:161..1013+ (Himanthalia elongata Himel1 dioecious)
TTCACTGCAAGCTTCGTGAGCAATCCTCTCAATATCCACATCGTCCAGAC CCTCAACGCGCAGCCGTCACAACAGAACACCCTGTCCATCCTCATGACGG TGCCGTGGTCGTTCAAGCTGGTGTATGGTTTCCTTTCCGACGTCCTACCC ATCGGAGGCCTGCGCCGCAAGCCGTACCTCATTGCGGGATACCTGACGTC CTCGGTCTGCTACGTGGCGCTCGCGATGAGCCCGCAGGTTGTCGCGCACA GCCTCGTACTGGGTTCGTAGGCGGGGGAATACTTCCATTTTTCACGGGAC CGGCCGTGGAAAGGCGGTGTATGATGCCTTTTTACTCCATTCCCTCGTTG TGTGGCGGGATCGCCTCGTTTTGCCGCGATTGACAGTTTGATTTAATTTA ATTTGGTTTGGTTATATTTGATACTAGAACAGAAAAGTCACGTAGATTAT TTTATTTTCTTTCGGGTGGGAAATATCGGACACACTAGAAAATCAATGTT GTATTACCCTTTCGGAAGATGTGCTCGCTTCGTGGCATTGCCGGACAAAT GGCTAGGGGAAGGGTACAAGCTGTTGCTTTCTAGTTCTCTGAAACGGGAA CTGAACGCGCTCTCTACTTCCGAGCCACCGTCCCTCTTTCGTGGCCGAAG AAATTCAATGGTATCTCGTCGTAGGTTTTGTGTGTGCGCACCCGCGGAAA CCTTTGGGCTGCTCGTGTCATCGTCGTTGGCTGCATCAGGTGGGCTTCCA GGCGCTTTCGAGCGTCCTCTTCCTGGCCACCATGGGACAAATAATGGGAG ACGTGATGGCCGACACCCTGGTAAGTACTACTGTGCTATCGATAGTGAAC TAA
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Coding sequence (CDS) from alignment at H-elongata_contig105321:161..1013+

>mRNA_H-elongata_contig105321.442.1 ID=mRNA_H-elongata_contig105321.442.1|Name=mRNA_H-elongata_contig105321.442.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig105321:161..1013+ (Himanthalia elongata Himel1 dioecious)
TTCACTGCAAGCTTCGTGAGCAATCCTCTCAATATCCACATCGTCCAGAC
CCTCAACGCGCAGCCGTCACAACAGAACACCCTGTCCATCCTCATGACGG
TGCCGTGGTCGTTCAAGCTGGTGTATGGTTTCCTTTCCGACGTCCTACCC
ATCGGAGGCCTGCGCCGCAAGCCGTACCTCATTGCGGGATACCTGACGTC
CTCGGTCTGCTACGTGGCGCTCGCGATGAGCCCGCAGGTTGTCGCGCACA
GCCTCGTACTGGGTTCTTCACTGCAAGCTTCGTGAGCAATCCTCTCAATA
TCCACATCGTCCAGACCCTCAACGCGCAGCCGTCACAACAGAACACCCTG
TCCATCCTCATGACGGTGCCGTGGTCGTTCAAGCTGGTGTATGGTTTCCT
TTCCGACGTCCTACCCATCGGAGGCCTGCGCCGCAAGCCGTACCTCATTG
CGGGATACCTGACGTCCTCGGTCTGCTACGTGGCGCTCGCGATGAGCCCG
CAGGTTGTCGCGCACAGCCTCGTACTGGGTTCCGTCCTCTTCCTGGCCAC
CATGGGACAAATAATGGGAGACGTGATGGCCGACACCCTGGTAAGTACTA
CTGTGCTATCGATAGTGAACTAACGTCCTCTTCCTGGCCACCATGGGACA
AATAATGGGAGACGTGATGGCCGACACCCTGGTAAGTACTACTGTGCTAT
CGATAGTGAACTAA
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