mRNA_H-elongata_contig10528.437.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: D7FW38_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW38_ECTSI) HSP 1 Score: 207 bits (528), Expect = 3.380e-62 Identity = 105/143 (73.43%), Postives = 121/143 (84.62%), Query Frame = 1
Query: 1 VVLVTYLPLVGYTILLRDLLAPVLEVILDQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSHGVPEGVVNVWPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
VV VTYLPLVGYTILLRDLLAP+ EV L++ L + ARN++V+ LV+LI PAC L+TL ALRH SF SV+AV+LL VFIG+RA +C S GVP VN+WPEDGWSGALQAIPIY+CAF CHFNVLPVHGELA PTRERLHR+V
Sbjct: 103 VVCVTYLPLVGYTILLRDLLAPLAEVALNRTLGSPARNLLVSALVVLIYPACTLRTLTALRHLSFLSVLAVSLLTVFIGLRAGECAASVGVPASAVNLWPEDGWSGALQAIPIYICAFGCHFNVLPVHGELAKPTRERLHRLV 245
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: A0A835ZAV6_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV6_9STRA) HSP 1 Score: 144 bits (363), Expect = 5.100e-38 Identity = 75/147 (51.02%), Postives = 99/147 (67.35%), Query Frame = 1
Query: 1 VVLVTYLPLVGYTILLRDLLAPVLE--VILDQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFS--HGVPEGVVNVWPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
++ VTYLPL+ Y IL+RDL+APV+E V+ + ARN++ LV + P C+++ L LR S+ ++ +LAV I RA CV + G G VN+WP DG SGALQ++PI++CAFVCHFNVLPVHG LA PTR RLHR V
Sbjct: 106 IICVTYLPLIAYIILMRDLVAPVVELYVLGGATMSRGARNLLAAALVAAVFPVCLVERLHGLRAACLVSIASITMLAVAIITRAAQCVGAAPRGALRGAVNLWPRDGASGALQSVPIWICAFVCHFNVLPVHGALARPTRRRLHRTV 252
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: A0A329S6M1_9STRA (Aa_trans domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329S6M1_9STRA) HSP 1 Score: 103 bits (256), Expect = 5.350e-23 Identity = 62/147 (42.18%), Postives = 93/147 (63.27%), Query Frame = 1
Query: 4 VLVTYLPLVGYTILLRDLLAPV-LEVILDQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSHG----VPEGVVNVWPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
VL+T+L LV Y IL +DL+ + + ++ + A +N++ V VLL+SPA + +++ ALR S S+V+V +LA+ I +RAVD FSH P+ + + P D W+ A A PI +F+CHFNVLPV+ EL PTR RL ++V
Sbjct: 125 VLLTFLTLVAYVILTKDLVGSLGASFLYNRPISEAEQNVLTIVCVLLVSPALLARSMDALRFTSIFSLVSVLVLAIAITVRAVDATFSHHDIQEEPQIPIKLTP-DSWADAAYAFPIISVSFLCHFNVLPVYRELHKPTRHRLKKIV 270
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: W2QAE6_PHYPN (Aa_trans domain-containing protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QAE6_PHYPN) HSP 1 Score: 98.6 bits (244), Expect = 3.470e-21 Identity = 62/146 (42.47%), Postives = 90/146 (61.64%), Query Frame = 1
Query: 4 VLVTYLPLVGYTILLRDLLAPV-LEVILDQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSH-GVPE--GVVNVWPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
VL+T+L LV Y IL +DL+ + + ++ L A +NI+ V VLL+SPA + +++ ALR S S+V+V +LA+ I +RA D FS + E G+ D W+ A A PI +F+CHFNVLPV+ EL PTR RL ++V
Sbjct: 760 VLLTFLTLVAYVILTKDLVGSLGASFLYNRPLSNAEQNILTIVCVLLVSPALLARSMDALRFTSVFSLVSVLVLAIAITVRAADATFSRLDIQEESGISIKLTPDSWADAAYAFPIISVSFLCHFNVLPVYRELHKPTRHRLKKIV 905
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: A0A6A3ZBD5_9STRA (Aa_trans domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZBD5_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 9.010e-21 Identity = 59/150 (39.33%), Postives = 91/150 (60.67%), Query Frame = 1
Query: 4 VLVTYLPLVGYTILLRDLLAPV-LEVILDQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSH-------GVPEGVVNVWPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
VL+T+L LV Y IL +DL+ + + ++ + A +N++ VLL+SPA + +++ ALR S S+V+V +LA+ I +RAVD F H P+ + + P D W+ A A PI +F+CHFNV+PV+ EL PTR RL ++V
Sbjct: 125 VLLTFLTLVAYVILTKDLVGSLGARFLYNRPVTEAEQNVLTICCVLLVSPALLARSMDALRFTSIFSLVSVLVLAIAITVRAVDTTFKHDDVMEVEAEPQIPIKLVP-DSWADAAYAFPIISVSFLCHFNVMPVYRELHKPTRHRLKKIV 273
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: A0A484DTN2_BRELC (Aa_trans domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTN2_BRELC) HSP 1 Score: 96.3 bits (238), Expect = 1.610e-20 Identity = 59/144 (40.97%), Postives = 92/144 (63.89%), Query Frame = 1
Query: 4 VLVTYLPLVGYTILLRDLLAPV-LEVILDQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSHGVPEGVVNV-WPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
VL+T+L LV YTIL +DL++ + + I ++ + A +NI+ VLL+SPA + +++ ALR S S+++V +LA+ I IRA+ SH + +++ D + A+ A PI AF+CHFNVLPV+ EL PTR RL ++V
Sbjct: 131 VLLTFLTLVAYTILTKDLVSSLGAKFIFNRPISNAEQNILTISCVLLVSPALLARSMSALRFTSMFSLMSVLMLAITISIRALGVTLSHRDIQKEIHIKLTPDSLADAVYAFPIISVAFLCHFNVLPVYRELHKPTRHRLKKIV 274
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: A0A7S2H3F0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H3F0_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.340e-19 Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 1
Query: 31 GYTILLRDLLAPVLEVIL-----DQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSHGVPE------GVVNVWPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
GY +LLRDLL P+ + I+ D RN+ + + VL+I+P L+TL AL++ S+ ++ LL+VFI IR+V C FS + +N P + L A+PI++ +FVCHFNVL VH EL NPT +R+ ++V
Sbjct: 137 GYAVLLRDLLEPLADHIIPPSKPDLEGPTFGRNLCMMIAVLIITPLTTLKTLTALKNVGAASMTSLLLLSVFIFIRSVQCNFSSSLARKSTSFGDYINYTPSS-LANFLDALPIFISSFVCHFNVLSVHNELQNPTSQRVSKLV 279
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: H3HAN2_PHYRM (SAP domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HAN2_PHYRM) HSP 1 Score: 94.0 bits (232), Expect = 1.400e-19 Identity = 57/150 (38.00%), Postives = 90/150 (60.00%), Query Frame = 1
Query: 4 VLVTYLPLVGYTILLRDLLAPV-LEVILDQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSH-------GVPEGVVNVWPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
VL+T+L LV Y IL +DL+ + + ++ + A +N++ + VLL+SPA + +++ ALR S S+V+V +LA+ I +RA VF P+ + + P D W+ A A PI +F+CHFNV+PV+ EL PTR RL ++V
Sbjct: 534 VLLTFLTLVAYVILTKDLVGSLGARFLYNRPISEAEQNVLTVICVLLVSPALLARSMDALRFTSIFSLVSVLVLAIAITVRAAGTVFGRRDNLEVEAEPQIPIKMVP-DSWADAAYAFPIISVSFLCHFNVMPVYRELHKPTRHRLKKIV 682
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: A0A421GWR1_9STRA (Aa_trans domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GWR1_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.830e-19 Identity = 63/150 (42.00%), Postives = 88/150 (58.67%), Query Frame = 1
Query: 4 VLVTYLPLVGYTILLRDLLAPV-LEVILDQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSH-------GVPEGVVNVWPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
VL+T+L LV Y IL +DL+ + + + +AL A +N++ V VLL+SPA + +++ ALR S S+V+V +LAV I RAV VF P V + P W A A PI +F+CHFNVLPV+ EL PTR RL ++V
Sbjct: 125 VLLTFLTLVAYIILTKDLVGSLGSQFLYGRALSVAEQNVLTIVCVLLVSPALLARSMDALRFTSVFSLVSVLVLAVAITFRAVSVVFKQRDILDVESEPVIPVKLVPTS-WVDATYAFPIISVSFLCHFNVLPVYRELHKPTRHRLKKVV 273
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: M4BKP6_HYAAE (Aa_trans domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BKP6_HYAAE) HSP 1 Score: 92.8 bits (229), Expect = 2.740e-19 Identity = 63/149 (42.28%), Postives = 88/149 (59.06%), Query Frame = 1
Query: 4 VLVTYLPLVGYTILLRDLLAPVLEVIL-DQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSH---GVPEGVVNV---WPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
VL+T+L LV Y IL RDL+ + E L ++ + A +N + + VLL+SPA + +++ ALR S S+++V +LA I IRA+ V + G E V V D W A A PI AF+CHFNVLPV+ EL PTR RL ++V
Sbjct: 114 VLLTFLTLVAYVILTRDLVGSLGEKFLFNRPISGAEQNGLTILCVLLVSPALLARSMNALRFTSVFSLMSVLVLATTITIRAIGTVVADRDDGTVEAAVRVPIKLVPDSWVDAAYAFPIISVAFLCHFNVLPVYRELHKPTRHRLKKIV 262 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10528.437.1 >prot_H-elongata_contig10528.437.1 ID=prot_H-elongata_contig10528.437.1|Name=mRNA_H-elongata_contig10528.437.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp VVLVTYLPLVGYTILLRDLLAPVLEVILDQALDAAARNIMVTVLVLLISPback to top mRNA from alignment at H-elongata_contig10528:647..1727+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10528.437.1 ID=mRNA_H-elongata_contig10528.437.1|Name=mRNA_H-elongata_contig10528.437.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1081bp|location=Sequence derived from alignment at H-elongata_contig10528:647..1727+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10528:647..1727+ >mRNA_H-elongata_contig10528.437.1 ID=mRNA_H-elongata_contig10528.437.1|Name=mRNA_H-elongata_contig10528.437.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig10528:647..1727+ (Himanthalia elongata Himel1 dioecious)back to top |