mRNA_H-elongata_contig105238.436.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105238.436.1
Unique NamemRNA_H-elongata_contig105238.436.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 3.040e-73
Identity = 118/185 (63.78%), Postives = 144/185 (77.84%), Query Frame = 1
Query:  175 RDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVEVTKAIYKEKMLNDVFPAIKRLWPGG-DRNVWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
            R T    NF GK+GIF FT + AAQRNS +R AGTMET+ VEVTK ++K K++++VFPAIK  WPGG  R +++Q DN  +H I  DPD VAAG ADGW+IRL+NQPSNSPDTNILDLGFFN++QSLQ R T  TVDEFI EVKR F+ Q P+T  KVW + QA+L+ I+LAKG+NTF LPHL+K
Sbjct:   80 RKTNRCCNFTGKLGIFQFTVQRAAQRNSRNRAAGTMETKCVEVTKEVFKRKVVDEVFPAIKARWPGGRGRTIYIQLDNKPSHRINADPDVVAAGIADGWDIRLINQPSNSPDTNILDLGFFNAVQSLQDRNTPRTVDEFITEVKRAFEEQSPSTHDKVWVSLQAILQ-IILAKGNNTFKLPHLKK 263          
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: W2PNG6_PHYPN (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PNG6_PHYPN)

HSP 1 Score: 216 bits (550), Expect = 1.250e-66
Identity = 118/249 (47.39%), Postives = 156/249 (62.65%), Query Frame = 1
Query:    4 KFDPMDNIVMVDEKWFFIKKNGQRHYL---RDG---EEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVEVTKAIYKEKMLNDVFPAIKRLWPGGDRN--VWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
            KFD M ++V +D+KWF++KK GQ  Y+   +DG   EE PV  VQ K +I KVMFL AV RPR        +DGK+ I+        QR S++RPAG  ETR V +T+ I +  ++NDV PAIK  WP   ++  + +QQDNA  H +ADD +  AAG ADGW I+L+NQP+ +PD N LDLGFF SIQSLQ +T   T DE I+EV + F A    +L K + T Q V+E I+  +G N + L HL K
Sbjct:   13 KFDAMHDVVHIDKKWFYVKKIGQHVYVLTGKDGCPTEEPPVQAVQSKRYITKVMFLCAVARPRG------GWDGKVSIWPVVETYITQRRSVNRPAGVEETRPVSITRDISRRILVNDVIPAIKAKWPQDQKHLPIKIQQDNARPHVLADDLEVAAAGCADGWAIKLVNQPAQNPDLNCLDLGFFASIQSLQSKTIPRTPDELIKEVLQSFQASTAVSLNKTFLTLQHVMEQILKNEGRNNYRLGHLHK 255          
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA)

HSP 1 Score: 220 bits (560), Expect = 7.180e-66
Identity = 111/243 (45.68%), Postives = 155/243 (63.79%), Query Frame = 1
Query:    1 RKFDPMDNIVMVDEKWFFIKKNGQRHYLRDGEEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVEVTKAIYKEKMLNDVFPAIKRLWPGG-DRNVWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
            R++  M + V +DEKWF+I +  +R YL   E  P  K Q K HI KVMFL AV RPR D+ + + +DGK+G++ F     A+R S +R  GT  T  + VTK +Y+  +++ V PAI+  WPG     ++VQQDNA  H   DDP+ +AAG  +GWNI+L+ QP+ SPD N+LDLGFFN+IQSLQ +TT  T+D+ I+ V+  F+      L K + T Q V+E  M + GDN + LPHL+K
Sbjct:  161 RQWHDMLDCVHIDEKWFYITQVNRRFYLWHDEPTPQRKAQSKRHITKVMFLCAVARPRHDSAHRKMWDGKVGLWPFVETQLAKRRSKNRDRGTPVTVPMTVTKPVYRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVDDPEVLAAGRKEGWNIQLMAQPAQSPDFNVLDLGFFNAIQSLQHQTTARTIDDLIKCVEDAFENLAWRVLDKTFMTLQKVMEEAMRSSGDNVYKLPHLKK 403          
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: UPI001C256EBA (uncharacterized protein LOC121779336 n=3 Tax=Salvia splendens TaxID=180675 RepID=UPI001C256EBA)

HSP 1 Score: 219 bits (558), Expect = 1.090e-65
Identity = 109/242 (45.04%), Postives = 153/242 (63.22%), Query Frame = 1
Query:    7 FDPMDNIVMVDEKWFFIKKNGQRHYLRDGEEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVE-VTKAIYKEKMLNDVFPAIKRLWP-GGDRNVWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
            F+ M N+V +DEKWF++ K+  R+YL   EE P    + K  I KVMFL AVGRP         FDGK+GIF FT  V AQRNS +RP GT+ET+ +  VT+A+ +E ++N + PAI   WP    + +++QQDNA  H    DP+   A  ++G+ I+L+ QP NSPDTNILDLGFF +IQSL+ +   + VDE ++ V   ++   P TL KV+ T Q+VL  I+  +G N + +PH+ K
Sbjct:  161 FNEMRNVVHIDEKWFYLTKSADRYYLLPDEEEPQRSCRSKRFITKVMFLCAVGRPHFGPNGETLFDGKLGIFPFTEMVPAQRNSKNRPRGTLETKPIPAVTQAVTREWLINKIIPAIHSKWPTSASKEIYIQQDNAKPHISTTDPEFEEAANSNGFKIQLICQPPNSPDTNILDLGFFRAIQSLKDKKACSNVDELLQNVSMAYEELTPQTLNKVFLTLQSVLSEILEVQGGNNYKIPHMNK 402          
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: A0A024UI08_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI08_9STRA)

HSP 1 Score: 215 bits (547), Expect = 1.490e-65
Identity = 109/238 (45.80%), Postives = 147/238 (61.76%), Query Frame = 1
Query:   16 MDNIVMVDEKWFFIKKNGQRHYLRDGEEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVEVTKAIYKEKMLNDVFPAIKRLWPGG-DRNVWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
            M + V +DEKWF+I K  +R+YL + E  P+ K Q K H+ KVMFL AV RPR D    +++DGKIG + FT    A RNS +   G   T  V VTK +Y+  +++ V PAIK  WPG   + +WVQQD+A  H   DD   +AAG +DGW+IRL  QPS SPD N+LDLG FN+IQSLQ  T   T++E +  V + +D  +P  L K + T Q V+E ++   GDN + +PH  K
Sbjct:   31 MLDTVHIDEKWFYISKVNRRYYLWNDEPVPMRKCQSKRHLMKVMFLTAVARPRFDAHRRKSWDGKIGTWPFTMVRPALRNSKNFKRGDAITEPVVVTKEVYRSFLVDKVIPAIKSRWPGRRSKTIWVQQDSARPHVAVDDAPVLAAGQSDGWDIRLCAQPSQSPDMNVLDLGLFNAIQSLQHHTASYTIEELVLAVSKAYDDLDPLVLDKTFMTLQKVMECVLKMDGDNVYKIPHANK 268          
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: A0A6A3XBC6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3XBC6_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.580e-65
Identity = 117/248 (47.18%), Postives = 156/248 (62.90%), Query Frame = 1
Query:    7 FDPMDNIVMVDEKWFFIKKNGQRHYL---RDG---EEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVEVTKAIYKEKMLNDVFPAIKRLWPGGDRN--VWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
            FDPM ++V +DEKWF++KK GQR Y+   +DG   EEAPV  VQ K HIKKVMFL AV RPR D      +DGKIG++        QR S++RPAG  E + V + + + +  ++ DV PAIK  WP   +   + +QQDNA  H + +D + +AAG ADGWNIRL NQP+ SPD N LDLG+  SIQSLQ  T+  T ++ I+EV+  F      TL K + T Q V++ IM  +G N + LPH+ K
Sbjct:  101 FDPMFDVVHIDEKWFYVKKIGQRVYVLTGKDGTPLEEAPVQYVQSKRHIKKVMFLCAVARPRGD------WDGKIGLWPVVETYITQRWSVNRPAGVEEIKPVSMNRTLARRMLVTDVIPAIKAKWPQDQKATLIRIQQDNARPHVLEEDAEVLAAGRADGWNIRLKNQPAQSPDLNCLDLGYLCSIQSLQSHTSPRTTEDLIKEVELTFAETTAETLNKTFLTLQLVMKEIMTNEGRNNYRLPHIHK 342          
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 1.600e-65
Identity = 116/213 (54.46%), Postives = 146/213 (68.54%), Query Frame = 1
Query:    4 KFDPMDNIVMVDEKWFFIKKNGQRHYLRDGEEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVEVTKAIYKEKMLNDVFPAIKRLWPGGDRNVWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAK 642
            KF    + + +DEKWF+I K GQR+Y  +GE  P+ KVQHKSH+ KVMFLAAV RPR D++ +R FDGKIGI+ FT + AAQRN  +  AGTM T  VEV + +YK K+ N+VFP I+  +P     ++ QQ+NA  H   +DPD VAA       I L+NQP NSPD NILDLGFFNSIQSLQ RTT  TV+E + EV+R   AQ+P TL +
Sbjct:   50 KFHHFFDFLHLDEKWFYICKQGQRYYFYEGEHLPIRKVQHKSHVIKVMFLAAVARPRYDSSRSRQFDGKIGIYPFTVQRAAQRNGRNMAAGTMVTHSVEVNRTLYK-KLNNNVFPDIRAKFPSSPI-IFAQQENAPGHRAMEDPDVVAAAGQGAGRIELVNQPPNSPDCNILDLGFFNSIQSLQDRTTPTTVEELVAEVERALWAQKPETLGR 260          
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: UPI001C264D25 (uncharacterized protein LOC121774216 n=2 Tax=Salvia splendens TaxID=180675 RepID=UPI001C264D25)

HSP 1 Score: 216 bits (550), Expect = 6.830e-65
Identity = 109/243 (44.86%), Postives = 153/243 (62.96%), Query Frame = 1
Query:    4 KFDPMDNIVMVDEKWFFIKKNGQRHYLRDGEEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVE-VTKAIYKEKMLNDVFPAIKRLWP-GGDRNVWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
            +F  M N+V +DEKWF++ K   R+YL   E+ P    + K +I KVMF+ AV RP+ D      +DGK+GIF FT  + AQR S +R  GTMET+ +  VTKA+ ++ +++ + PAIK  WP G  +++++QQDNA  H  A DP+  A   +DG++I+L+ QP NSPDTNILDLGFF +IQSLQ      TVDE +  V   F    P TL KV+ + QA L  I+  +G N + +PH+ K
Sbjct:  124 QFQGMHNVVHIDEKWFYMTKVSDRYYLLPDEDEPYRSCKSKRYITKVMFMCAVSRPQFDANGQATYDGKVGIFPFTEVLPAQRKSKNRARGTMETKAINSVTKAVMRDCLIHKIIPAIKAKWPVGASKDIYIQQDNATPHITAMDPEFQAVAKSDGFDIQLICQPPNSPDTNILDLGFFRAIQSLQHEKPCKTVDELVGNVCSSFTELSPQTLNKVFLSLQACLTEILHCRGGNGYKVPHINK 366          
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: A0A6A4B6L5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4B6L5_9STRA)

HSP 1 Score: 212 bits (540), Expect = 1.190e-64
Identity = 114/248 (45.97%), Postives = 151/248 (60.89%), Query Frame = 1
Query:    7 FDPMDNIVMVDEKWFFIKKNGQRHYLRDG------EEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVEVTKAIYKEKMLNDVFPAIKRLWPGGDRNVWV--QQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
            FDPM  +V +DEKWF++KK G+  Y+  G      EE  V  VQ K HIKKVMFL AV RPR D      +DGK+GI+   +    QR S +RPAG  E   V +T+ IY++ ++NDV PAIK  WP   + + +  QQDNA  H + +D   +AAG ++GW +  LNQP+ SPD N LDL FF+SIQSLQ +T   T ++ IEEV+  F      TL K + T Q+V+  IM   G NT+ +PHL K
Sbjct:   22 FDPMYEVVHLDEKWFYMKKVGKHVYILTGKDDVPSEEPSVQFVQSKQHIKKVMFLCAVARPRGD------WDGKVGIWPVVKNYRTQRWSRNRPAGIDEVHPVTMTREIYRDMLINDVIPAIKEKWPQAQKGIPIRLQQDNAKPHVLENDAAVIAAGCSNGWTMYPLNQPAQSPDLNCLDLSFFSSIQSLQSQTRPRTTEDLIEEVEYAFHETSADTLNKTFLTLQSVMLEIMKCGGSNTYKIPHLHK 263          
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: UPI002008F034 (uncharacterized protein LOC125206616 n=4 Tax=Salvia TaxID=21880 RepID=UPI002008F034)

HSP 1 Score: 216 bits (551), Expect = 1.230e-64
Identity = 109/243 (44.86%), Postives = 152/243 (62.55%), Query Frame = 1
Query:    4 KFDPMDNIVMVDEKWFFIKKNGQRHYLRDGEEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVE-VTKAIYKEKMLNDVFPAIKRLWP-GGDRNVWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
            ++  M N+V +DEKWF++ K   R+YL   E+ P    + K +I KVMF+ AV RP         +DGK+GIF FT  + AQR S +RP GTMET+ +  VTK + ++ ++N + PAIK  WP    +++++QQDNA  H  A DPD  AA  +DG+ I+L+ QP+NSPDTNILDLGFF +IQSLQ      TVDE +  V   F    P TL +V+ + QA L  I+L +G N + +PH+ K
Sbjct:  161 QYQSMHNVVHIDEKWFYMTKASDRYYLLPDEDEPYRSCKSKRYITKVMFMCAVSRPHFGMDGQATYDGKVGIFPFTEVLPAQRKSKNRPRGTMETKAIHSVTKEVMRDCLINKIIPAIKAKWPVWASKDIYIQQDNATPHITAMDPDFQAAANSDGFKIQLICQPANSPDTNILDLGFFRAIQSLQYEKPCKTVDELVGNVCSSFAELSPQTLNRVFLSLQACLTEILLCRGGNGYKVPHINK 403          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGY9_9PHAE3.040e-7363.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W2PNG6_PHYPN1.250e-6647.39Uncharacterized protein n=2 Tax=Phytophthora paras... [more]
A0A6A5AA16_9STRA7.180e-6645.68Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
UPI001C256EBA1.090e-6545.04uncharacterized protein LOC121779336 n=3 Tax=Salvi... [more]
A0A024UI08_9STRA1.490e-6545.80Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6A3XBC6_9STRA1.580e-6547.18Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6H5KWV2_9PHAE1.600e-6554.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001C264D256.830e-6544.86uncharacterized protein LOC121774216 n=2 Tax=Salvi... [more]
A0A6A4B6L5_9STRA1.190e-6445.97Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
UPI002008F0341.230e-6444.86uncharacterized protein LOC125206616 n=4 Tax=Salvi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105238contigH-elongata_contig105238:907..1632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.9
Seed ortholog evalue4e-53
Seed eggNOG ortholog157072.XP_008866696.1
EggNOG OGs2CMKC@1,2QQNW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size726
Cds size711
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.977616-CDS-H-elongata_contig105238:906..16171622929584.977616-CDS-H-elongata_contig105238:906..1617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105238 907..1617 -
1691679080.3221383-CDS-H-elongata_contig105238:906..16171691679080.3221383-CDS-H-elongata_contig105238:906..1617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105238 907..1617 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929585.0072217-UTR-H-elongata_contig105238:1617..16321622929585.0072217-UTR-H-elongata_contig105238:1617..1632Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105238 1618..1632 -
1691679080.331387-UTR-H-elongata_contig105238:1617..16321691679080.331387-UTR-H-elongata_contig105238:1617..1632Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105238 1618..1632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105238.436.1prot_H-elongata_contig105238.436.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105238 907..1617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105238.436.1

>prot_H-elongata_contig105238.436.1 ID=prot_H-elongata_contig105238.436.1|Name=mRNA_H-elongata_contig105238.436.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=237bp
MDNIVMVDEKWFFIKKNGQRHYLRDGEEAPVSKVQHKSHIKKVMFLAAVG
RPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVEVTKAI
YKEKMLNDVFPAIKRLWPGGDRNVWVQQDNALAHNIADDPDTVAAGTADG
WNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFD
AQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK
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mRNA from alignment at H-elongata_contig105238:907..1632-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105238.436.1 ID=mRNA_H-elongata_contig105238.436.1|Name=mRNA_H-elongata_contig105238.436.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=726bp|location=Sequence derived from alignment at H-elongata_contig105238:907..1632- (Himanthalia elongata Himel1 dioecious)
CGCAAATTTGACCCCATGGACAACATCGTCATGGTGGACGAAAAGTGGTT CTTCATCAAGAAGAACGGGCAGAGGCATTACCTTCGTGATGGTGAAGAAG CACCCGTGAGCAAAGTCCAGCATAAATCGCACATAAAAAAGGTGATGTTC CTGGCAGCCGTCGGTCGACCGCGCAGAGACACGACCAACAACCGGAACTT CGACGGGAAAATCGGCATCTTCTCGTTCACGAGGCGGGTGGCAGCCCAAC GGAACAGCATGCACCGGCCTGCGGGCACGATGGAAACAAGGATGGTGGAG GTGACTAAGGCCATTTACAAGGAGAAGATGCTGAACGACGTGTTCCCGGC CATCAAGCGCTTGTGGCCGGGTGGGGACCGAAACGTCTGGGTGCAACAGG ACAATGCTCTTGCTCACAACATCGCCGACGACCCGGACACTGTGGCCGCG GGTACTGCCGACGGGTGGAACATCAGGCTCCTCAACCAGCCGTCCAACAG CCCCGACACAAACATCCTGGACTTGGGGTTCTTCAACTCCATCCAATCTC TCCAAGGCAGGACTACGCTCAACACGGTGGACGAATTCATCGAGGAGGTC AAGCGGGTGTTCGACGCGCAGGAGCCTGCAACCCTTGCAAAGGTCTGGAC GACCTACCAGGCCGTCCTTGAACATATCATGCTGGCCAAGGGTGACAACA CGTTCGCCTTGCCCCACCTGCGCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig105238:907..1632-

>mRNA_H-elongata_contig105238.436.1 ID=mRNA_H-elongata_contig105238.436.1|Name=mRNA_H-elongata_contig105238.436.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1422bp|location=Sequence derived from alignment at H-elongata_contig105238:907..1632- (Himanthalia elongata Himel1 dioecious)
ATGGACAACATCGTCATGGTGGACGAAAAGTGGTTCTTCATCAAGAAGAA
CGGGCAGAGGCATTACCTTCGTGATGGTGAAGAAGCACCCGTGAGCAAAG
TCCAGCATAAATCGCACATAAAAAAGGTGATGTTCCTGGCAGCCGTCGGT
CGACCGCGCAGAGACACGACCAACAACCGGAACTTCGACGGGAAAATCGG
CATCTTCTCGTTCACGAGGCGGGTGGCAGCCCAACGGAACAGCATGCACC
GGCCTGCGGGCACGATGGAAACAAGGATGGTGGAGGTGACTAAGGCCATT
TACAAGGAGAAGATGCTGAACGACGTGTTCCCGGCCATCAAGCGCTTGTG
GCCGGGTGGGGACCGAAACGTCTGGGTGCAACAGGACAATGCTCTTGCTC
ACAACATCGCCGACGACCCGGACACTGTGGCCGCGGGTACTGCCGACGGG
TGGAACATCAGGCTCCTCAACCAGCCGTCCAACAGCCCCGACACAAACAT
CCTGGACTTGGGGTTCTTCAACTCCATCCAATCTCTCCAAGGCAGGACTA
CGCTCAACACGGTGGACGAATTCATCGAGGAGGTCAAGCGGGTGTTCGAC
GCGCAGGAGCCTGCAACCCTTGCAAAGGTCTGGACGACCTACCAGGCCGT
CCTTGAACATATCATGCTGGCCAAGGGTGACAACACGTTCGCCTTGCCCC
ACCTGCGCAAGATGGACAACATCGTCATGGTGGACGAAAAGTGGTTCTTC
ATCAAGAAGAACGGGCAGAGGCATTACCTTCGTGATGGTGAAGAAGCACC
CGTGAGCAAAGTCCAGCATAAATCGCACATAAAAAAGGTGATGTTCCTGG
CAGCCGTCGGTCGACCGCGCAGAGACACGACCAACAACCGGAACTTCGAC
GGGAAAATCGGCATCTTCTCGTTCACGAGGCGGGTGGCAGCCCAACGGAA
CAGCATGCACCGGCCTGCGGGCACGATGGAAACAAGGATGGTGGAGGTGA
CTAAGGCCATTTACAAGGAGAAGATGCTGAACGACGTGTTCCCGGCCATC
AAGCGCTTGTGGCCGGGTGGGGACCGAAACGTCTGGGTGCAACAGGACAA
TGCTCTTGCTCACAACATCGCCGACGACCCGGACACTGTGGCCGCGGGTA
CTGCCGACGGGTGGAACATCAGGCTCCTCAACCAGCCGTCCAACAGCCCC
GACACAAACATCCTGGACTTGGGGTTCTTCAACTCCATCCAATCTCTCCA
AGGCAGGACTACGCTCAACACGGTGGACGAATTCATCGAGGAGGTCAAGC
GGGTGTTCGACGCGCAGGAGCCTGCAACCCTTGCAAAGGTCTGGACGACC
TACCAGGCCGTCCTTGAACATATCATGCTGGCCAAGGGTGACAACACGTT
CGCCTTGCCCCACCTGCGCAAG
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