mRNA_H-elongata_contig105208.431.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: D8LK22_ECTSI (30S ribosomal protein S1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK22_ECTSI) HSP 1 Score: 129 bits (324), Expect = 5.930e-34 Identity = 61/79 (77.22%), Postives = 71/79 (89.87%), Query Frame = 1
Query: 1 RTLEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 237
R LE+LQ GEWI+GKVRNVE+YGAWVDVNAERDGLLHV+DM +TFTP+A +VVAT+D ++ RVKFVDP GKLGLSLVE
Sbjct: 162 RKLEDLQEGEWIKGKVRNVESYGAWVDVNAERDGLLHVKDMGETFTPSAGEVVATKDIIQARVKFVDPVTGKLGLSLVE 240
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A6H5KCP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP4_9PHAE) HSP 1 Score: 130 bits (326), Expect = 1.250e-33 Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 1
Query: 1 RTLEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 237
R LE+LQ GEWI GKVRNVE+YGAWVDVNAERDGLLHV+DM +TFTP+A +VVAT+D ++VRVKFVDP GKLGLSLVE
Sbjct: 307 RKLEDLQEGEWITGKVRNVESYGAWVDVNAERDGLLHVKDMGETFTPSAGEVVATKDIIQVRVKFVDPVTGKLGLSLVE 385
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A835YZW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW7_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 2.410e-19 Identity = 43/76 (56.58%), Postives = 51/76 (67.11%), Query Frame = 1
Query: 7 LEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLV 234
L L+ G W+ GKVRN+E++GAWVDV AERDGLLHV DMS+ FTP T D + V VK VD G +L LS V
Sbjct: 112 LASLERGVWLTGKVRNLESFGAWVDVGAERDGLLHVSDMSEGFTPRVADAFNTGDIISVTVKHVDAGTNRLALSAV 187
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A1I4GT85_9LACT (S1 motif domain-containing protein n=35 Tax=Streptococcaceae TaxID=1300 RepID=A0A1I4GT85_9LACT) HSP 1 Score: 76.3 bits (186), Expect = 2.040e-14 Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query: 13 ELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 237
+L+VG+ +EG VRNV ++GA+VD+ + DGL+HV D+SK F N +VVA V V VK +D GK+ L+LVE
Sbjct: 632 DLRVGQKLEGAVRNVVDFGAFVDIGIKNDGLIHVSDLSKNFVKNPHEVVAVGQIVTVWVKSIDQERGKINLTLVE 706
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: UPI00195F901C (RNA-binding transcriptional accessory protein n=1 Tax=Streptococcus loxodontisalivarius TaxID=1349415 RepID=UPI00195F901C) HSP 1 Score: 75.1 bits (183), Expect = 5.190e-14 Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 1
Query: 7 LEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLV 234
L++LQ+G+ +EG VRNV ++GA+VD+ DGL+H+ +MSK+F + QVV+ D V V V VD GK+ LSLV
Sbjct: 629 LKDLQIGQKLEGTVRNVVDFGAFVDIGVHEDGLIHISEMSKSFVNHPSQVVSVGDVVTVWVSKVDLERGKVNLSLV 704
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: UPI0011556344 (S1 RNA-binding domain-containing protein n=1 Tax=Bacillus cereus TaxID=1396 RepID=UPI0011556344) HSP 1 Score: 70.5 bits (171), Expect = 5.270e-14 Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 1
Query: 13 ELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLV 234
+LQ+G+ +EG VRNV ++GA++D+ + +GL HV D+SK+F N VVA V V VK +D GK+ L+LV
Sbjct: 34 DLQIGQQLEGVVRNVVDFGAFIDIGIKNEGLAHVSDLSKSFVKNPSDVVAVGQIVTVWVKSLDLQRGKINLTLV 107
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: R1C2D2_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C2D2_EMIHU) HSP 1 Score: 74.3 bits (181), Expect = 6.050e-14 Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 7 LEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLS 228
L++L+VG +EG VR+V+ YGA+VD+ DGLLHV +M+ TF +A + A D+V VRVK VD G++ LS
Sbjct: 76 LDQLEVGSTVEGTVRSVQQYGAFVDIGFASDGLLHVSEMADTFVKDANDMFAVGDAVTVRVKSVDLAKGQVALS 149
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A7S2V5P7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P7_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 6.050e-14 Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 1 RTLEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDM-SKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 237
+ L ELQ G+ + G VRNVE +GA+V V AE+DGLLH++DM S + A++V + D V V+VKFVD LGL++ E
Sbjct: 138 KPLSELQAGDRLNGTVRNVEKFGAFVHVGAEKDGLLHIKDMCSAQWVSRADEVFKSGDEVSVQVKFVDAEKRLLGLTMKE 217
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A1G6C0D6_9STRE (S1 motif domain-containing protein n=2 Tax=Streptococcus henryi TaxID=439219 RepID=A0A1G6C0D6_9STRE) HSP 1 Score: 74.3 bits (181), Expect = 9.680e-14 Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 7 LEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 237
+ +L++G+ +EG VRNV ++GA+VD+ DGL+H+ MSKTF + QVV+ D V V V +D GK+ LSLV+
Sbjct: 629 ISDLEIGQKLEGTVRNVVDFGAFVDIGLHDDGLIHISQMSKTFVKHPSQVVSVGDVVTVWVSKIDKERGKINLSLVD 705
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Match: A0A5C5SDL5_9STRE (RNA-binding transcriptional accessory protein n=1 Tax=Streptococcus pharyngis TaxID=1562651 RepID=A0A5C5SDL5_9STRE) HSP 1 Score: 73.6 bits (179), Expect = 1.810e-13 Identity = 34/77 (44.16%), Postives = 54/77 (70.13%), Query Frame = 1
Query: 7 LEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEQVVATRDSVRVRVKFVDPGAGKLGLSLVE 237
+++LQVG+ +EG VRNV ++GA+VD+ DGL+H+ DM ++F + QVV+ + V V +K +D GK+ LSLV+
Sbjct: 627 IKDLQVGQQLEGTVRNVVDFGAFVDIGIHDDGLVHISDMRRSFVKHPSQVVSVGEIVTVWIKSIDVQRGKINLSLVK 703 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105208.431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig105208.431.1 >prot_H-elongata_contig105208.431.1 ID=prot_H-elongata_contig105208.431.1|Name=mRNA_H-elongata_contig105208.431.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp RTLEELQVGEWIEGKVRNVENYGAWVDVNAERDGLLHVRDMSKTFTPNAEback to top mRNA from alignment at H-elongata_contig105208:1453..1955+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig105208.431.1 ID=mRNA_H-elongata_contig105208.431.1|Name=mRNA_H-elongata_contig105208.431.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=503bp|location=Sequence derived from alignment at H-elongata_contig105208:1453..1955+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig105208:1453..1955+ >mRNA_H-elongata_contig105208.431.1 ID=mRNA_H-elongata_contig105208.431.1|Name=mRNA_H-elongata_contig105208.431.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig105208:1453..1955+ (Himanthalia elongata Himel1 dioecious)back to top |