mRNA_H-elongata_contig105154.427.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105154.427.1
Unique NamemRNA_H-elongata_contig105154.427.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig105154.427.1 vs. uniprot
Match: D8LNL4_ECTSI (Mitogen-activated protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNL4_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.350e-37
Identity = 63/73 (86.30%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:   19 YVVTRWYRAPEIMLSFQNYNEAIDVWSVGCILGEMLGRKPLFAGRDYLHQLKLITSLIGKPSEEELWYVTNTR 237
            YVVTRWYRAPEIMLS QNYNEAIDVWSVGCI GEMLGRKPLFAG DY+HQLKLITSLIGKP+E ++W+VTN R
Sbjct:  300 YVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLFAGNDYIHQLKLITSLIGKPTESDIWFVTNPR 372
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BLAST of mRNA_H-elongata_contig105154.427.1 vs. uniprot
Match: A0A835Z2Y5_9STRA (Mitogen-activated protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Y5_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.450e-36
Identity = 61/73 (83.56%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:   19 YVVTRWYRAPEIMLSFQNYNEAIDVWSVGCILGEMLGRKPLFAGRDYLHQLKLITSLIGKPSEEELWYVTNTR 237
            YVVTRWYRAPEIMLS QNYNEAIDVWSVGCI GEMLGRKPLF G DY+HQLKLIT LIGKP+E +LW+V+N R
Sbjct:  293 YVVTRWYRAPEIMLSVQNYNEAIDVWSVGCIFGEMLGRKPLFPGNDYIHQLKLITKLIGKPAEADLWFVSNPR 365
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BLAST of mRNA_H-elongata_contig105154.427.1 vs. uniprot
Match: A0A7S2CTH5_9STRA (Mitogen-activated protein kinase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTH5_9STRA)

HSP 1 Score: 122 bits (307), Expect = 6.300e-32
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:   19 YVVTRWYRAPEIMLSFQNYNEAIDVWSVGCILGEMLGRKPLFAGRDYLHQLKLITSLIGKPSEEELWYVTNTR 237
            YVVTRWYRAPEIMLS Q+Y+ AIDVWSVGCI GEML RKP+F G DY+HQLKLI  L+G P+E ELW+VTN +
Sbjct:  179 YVVTRWYRAPEIMLSCQDYSCAIDVWSVGCIFGEMLARKPMFPGSDYIHQLKLIMKLVGTPTESELWFVTNQK 251
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BLAST of mRNA_H-elongata_contig105154.427.1 vs. uniprot
Match: A0A6V1P443_HETAK (Mitogen-activated protein kinase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P443_HETAK)

HSP 1 Score: 122 bits (307), Expect = 3.860e-31
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:   19 YVVTRWYRAPEIMLSFQNYNEAIDVWSVGCILGEMLGRKPLFAGRDYLHQLKLITSLIGKPSEEELWYVTNTR 237
            YVVTRWYRAPEIMLS Q+Y+ AIDVWS+GCI  EMLGRKPLF G DY+HQLKLIT ++G P+E+EL YV N R
Sbjct:  297 YVVTRWYRAPEIMLSVQDYSRAIDVWSIGCIFAEMLGRKPLFPGNDYIHQLKLITKVVGTPTEDELGYVENPR 369
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BLAST of mRNA_H-elongata_contig105154.427.1 vs. uniprot
Match: W7U818_9STRA (Mitogen-activated protein kinase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U818_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.710e-30
Identity = 56/76 (73.68%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    4 SCCVRYVVTRWYRAPEIMLSFQNYNEAIDVWSVGCILGEMLGRKPLFAGRDYLHQLKLITSLIGKPSEEELWYVTN 231
            S    YVVTRWYRAPEIMLS   Y  AIDVW+VGCI GEMLGRKPLF G DY+HQLKLIT L+G PS EEL +VTN
Sbjct:  327 SDLTEYVVTRWYRAPEIMLSCPEYTTAIDVWAVGCIFGEMLGRKPLFPGNDYIHQLKLITKLVGTPSAEELAFVTN 402
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BLAST of mRNA_H-elongata_contig105154.427.1 vs. uniprot
Match: A0A4D9D8Z4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8Z4_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.480e-30
Identity = 56/76 (73.68%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    4 SCCVRYVVTRWYRAPEIMLSFQNYNEAIDVWSVGCILGEMLGRKPLFAGRDYLHQLKLITSLIGKPSEEELWYVTN 231
            S    YVVTRWYRAPEIMLS   Y  AIDVW+VGCI GEMLGRKPLF G DY+HQLKLIT L+G PS EEL +VTN
Sbjct:  343 SDLTEYVVTRWYRAPEIMLSCPEYTTAIDVWAVGCIFGEMLGRKPLFPGNDYIHQLKLITKLVGTPSAEELVFVTN 418
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BLAST of mRNA_H-elongata_contig105154.427.1 vs. uniprot
Match: A0A7S3BKM0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BKM0_9EUKA)

HSP 1 Score: 110 bits (275), Expect = 1.000e-29
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:   19 YVVTRWYRAPEIMLSFQNYNEAIDVWSVGCILGEMLGRKPLFAGRDYLHQLKLITSLIGKPSEEEL 216
            YV TRWYRAPEIMLS++ Y +AIDVWSVGCI  E+LGRKPLF G+DY+HQL LIT +IG P EE++
Sbjct:    2 YVATRWYRAPEIMLSWKEYTKAIDVWSVGCIFAELLGRKPLFPGKDYIHQLNLITDVIGTPDEEDI 67
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BLAST of mRNA_H-elongata_contig105154.427.1 vs. uniprot
Match: W7TT92_9STRA (Mitogen-activated protein kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TT92_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.520e-29
Identity = 53/74 (71.62%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:   19 YVVTRWYRAPEIMLSFQNYNEAIDVWSVGCILGEMLGRKPLFAGRDYLHQLKLITSLIGKP-SEEELWYVTNTR 237
            YVVTRWYRAPEIMLS Q Y++AIDVW+ GCI GEMLGRKPLF G DY+HQLKLIT ++G P SE +LW+V N +
Sbjct:  296 YVVTRWYRAPEIMLSSQEYSKAIDVWAAGCIFGEMLGRKPLFPGNDYIHQLKLITRIVGTPTSEADLWFVKNPK 369
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BLAST of mRNA_H-elongata_contig105154.427.1 vs. uniprot
Match: A0A2R5G4A2_9STRA (Mitogen-activated protein kinase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G4A2_9STRA)

HSP 1 Score: 115 bits (289), Expect = 4.820e-29
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:   19 YVVTRWYRAPEIMLSFQNYNEAIDVWSVGCILGEMLGRKPLFAGRDYLHQLKLITSLIGKPSEEELWYVTNTR 237
            YVVTRWYRAPEIMLS + Y  AIDVWSVGCILGE+LGRKP+F G DY+HQL LI+ L+GKPS ++L +VT+ +
Sbjct:  209 YVVTRWYRAPEIMLSCKEYTFAIDVWSVGCILGELLGRKPMFPGEDYIHQLTLISDLLGKPSSDDLAFVTSEK 281
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BLAST of mRNA_H-elongata_contig105154.427.1 vs. uniprot
Match: Q9FXT7_CHLRE (Mitogen-activated protein kinase n=5 Tax=Chlamydomonadales TaxID=3042 RepID=Q9FXT7_CHLRE)

HSP 1 Score: 115 bits (288), Expect = 5.440e-29
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:   19 YVVTRWYRAPEIMLSFQNYNEAIDVWSVGCILGEMLGRKPLFAGRDYLHQLKLITSLIGKPSEEELWYVTNTR 237
            YVVTRWYRAPE++LS   Y  AIDVWSVGCI  E+LGRKPLF G+DY+HQL LIT +IG PSEEEL ++T+ +
Sbjct:  220 YVVTRWYRAPELLLSCSGYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLSLITKVIGSPSEEELGFITSEK 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105154.427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNL4_ECTSI1.350e-3786.30Mitogen-activated protein kinase n=2 Tax=Ectocarpu... [more]
A0A835Z2Y5_9STRA2.450e-3683.56Mitogen-activated protein kinase n=1 Tax=Tribonema... [more]
A0A7S2CTH5_9STRA6.300e-3273.97Mitogen-activated protein kinase n=1 Tax=Florencie... [more]
A0A6V1P443_HETAK3.860e-3173.97Mitogen-activated protein kinase n=1 Tax=Heterosig... [more]
W7U818_9STRA3.710e-3073.68Mitogen-activated protein kinase n=1 Tax=Nannochlo... [more]
A0A4D9D8Z4_9STRA4.480e-3073.68Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3BKM0_9EUKA1.000e-2971.21Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
W7TT92_9STRA1.520e-2971.62Mitogen-activated protein kinase n=2 Tax=Monodopsi... [more]
A0A2R5G4A2_9STRA4.820e-2969.86Mitogen-activated protein kinase n=1 Tax=Hondaea f... [more]
Q9FXT7_CHLRE5.440e-2968.49Mitogen-activated protein kinase n=5 Tax=Chlamydom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105154contigH-elongata_contig105154:1603..1842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score118.6
Seed ortholog evalue1.3e-24
Seed eggNOG ortholog3055.EDO98258
Preferred nameMPK6
KEGG koko:K04371,ko:K04464,ko:K14512,ko:K20600
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04016,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04075,ko04114,ko04138,ko04139,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05203,ko05205,ko05206,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,ko05418,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04016,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04075,map04114,map04138,map04139,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05203,map05205,map05206,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231,map05418
KEGG ModuleM00687,M00690
GOsGO:0000003,GO:0000165,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000302,GO:0000910,GO:0000911,GO:0001101,GO:0002218,GO:0002252,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0003002,GO:0003006,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004707,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0006464,GO:0006468,GO:0006725,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006971,GO:0006972,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007389,GO:0007568,GO:0008150,GO:0008152,GO:0009058,GO:0009266,GO:0009314,GO:0009403,GO:0009404,GO:0009409,GO:0009411,GO:0009416,GO:0009504,GO:0009524,GO:0009555,GO:0009574,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009620,GO:0009627,GO:0009628,GO:0009636,GO:0009651,GO:0009653,GO:0009682,GO:0009700,GO:0009719,GO:0009723,GO:0009725,GO:0009733,GO:0009737,GO:0009751,GO:0009753,GO:0009755,GO:0009791,GO:0009814,GO:0009856,GO:0009861,GO:0009862,GO:0009863,GO:0009864,GO:0009867,GO:0009868,GO:0009908,GO:0009914,GO:0009987,GO:0010015,GO:0010033,GO:0010035,GO:0010051,GO:0010101,GO:0010102,GO:0010120,GO:0010150,GO:0010183,GO:0010224,GO:0010229,GO:0010243,GO:0010311,GO:0010468,GO:0010817,GO:0012505,GO:0014070,GO:0015630,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019222,GO:0019438,GO:0019538,GO:0019748,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022622,GO:0023014,GO:0023052,GO:0030865,GO:0031122,GO:0031347,GO:0031349,GO:0031984,GO:0032260,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032870,GO:0033206,GO:0033554,GO:0033993,GO:0034641,GO:0035556,GO:0035670,GO:0035690,GO:0035821,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0042430,GO:0042435,GO:0042493,GO:0042539,GO:0042542,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043622,GO:0044003,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044703,GO:0044706,GO:0045087,GO:0045088,GO:0045089,GO:0046217,GO:0046483,GO:0046677,GO:0048229,GO:0048232,GO:0048285,GO:0048364,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048518,GO:0048527,GO:0048528,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048827,GO:0048856,GO:0048868,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050826,GO:0050896,GO:0050918,GO:0051179,GO:0051234,GO:0051301,GO:0051321,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051817,GO:0052031,GO:0052167,GO:0052169,GO:0052173,GO:0052200,GO:0052255,GO:0052306,GO:0052308,GO:0052314,GO:0052315,GO:0052317,GO:0052552,GO:0052553,GO:0052564,GO:0052572,GO:0060255,GO:0060918,GO:0061458,GO:0061640,GO:0065007,GO:0065008,GO:0070887,GO:0071229,GO:0071236,GO:0071310,GO:0071395,GO:0071407,GO:0071446,GO:0071495,GO:0071704,GO:0071840,GO:0075136,GO:0080026,GO:0080134,GO:0080135,GO:0080136,GO:0090567,GO:0090693,GO:0090696,GO:0090697,GO:0090698,GO:0097305,GO:0097435,GO:0098542,GO:0098791,GO:0099402,GO:0140013,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901698,GO:1901700,GO:1901701,GO:1902410,GO:1903046,GO:1903047,GO:1905392,GO:1905393
EggNOG free text desc.mitogen-activated protein kinase
EggNOG OGs34KAT@3041,37I3U@33090,KOG0660@1,KOG0660@2759
EC2.7.11.24
COG Functional cat.T
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.1703374-CDS-H-elongata_contig105154:1602..18421622929584.1703374-CDS-H-elongata_contig105154:1602..1842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105154 1603..1842 +
1691679079.9953713-CDS-H-elongata_contig105154:1602..18421691679079.9953713-CDS-H-elongata_contig105154:1602..1842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105154 1603..1842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105154.427.1prot_H-elongata_contig105154.427.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105154 1603..1842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105154.427.1

>prot_H-elongata_contig105154.427.1 ID=prot_H-elongata_contig105154.427.1|Name=mRNA_H-elongata_contig105154.427.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MSCCVRYVVTRWYRAPEIMLSFQNYNEAIDVWSVGCILGEMLGRKPLFAG
RDYLHQLKLITSLIGKPSEEELWYVTNTR*
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mRNA from alignment at H-elongata_contig105154:1603..1842+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105154.427.1 ID=mRNA_H-elongata_contig105154.427.1|Name=mRNA_H-elongata_contig105154.427.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig105154:1603..1842+ (Himanthalia elongata Himel1 dioecious)
ATGTCGTGCTGTGTAAGGTACGTCGTTACGCGTTGGTATCGCGCTCCGGA
GATCATGCTCTCCTTCCAAAACTACAACGAAGCTATCGACGTGTGGAGTG
TGGGCTGCATCCTCGGGGAGATGTTAGGGCGAAAACCTCTCTTCGCTGGC
AGGGACTATCTCCACCAGCTCAAGCTCATAACGTCGCTCATCGGGAAGCC
GTCGGAGGAAGAGCTGTGGTACGTCACCAACACGAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig105154:1603..1842+

>mRNA_H-elongata_contig105154.427.1 ID=mRNA_H-elongata_contig105154.427.1|Name=mRNA_H-elongata_contig105154.427.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig105154:1603..1842+ (Himanthalia elongata Himel1 dioecious)
ATGTCGTGCTGTGTAAGGTACGTCGTTACGCGTTGGTATCGCGCTCCGGA
GATCATGCTCTCCTTCCAAAACTACAACGAAGCTATCGACGTGTGGAGTG
TGGGCTGCATCCTCGGGGAGATGTTAGGGCGAAAACCTCTCTTCGCTGGC
AGGGACTATCTCCACCAGCTCAAGCTCATAACGTCGCTCATCGGGAAGCC
GTCGGAGGAAGAGCTGTGGTACGTCACCAACACGAGGTGAATGTCGTGCT
GTGTAAGGTACGTCGTTACGCGTTGGTATCGCGCTCCGGAGATCATGCTC
TCCTTCCAAAACTACAACGAAGCTATCGACGTGTGGAGTGTGGGCTGCAT
CCTCGGGGAGATGTTAGGGCGAAAACCTCTCTTCGCTGGCAGGGACTATC
TCCACCAGCTCAAGCTCATAACGTCGCTCATCGGGAAGCCGTCGGAGGAA
GAGCTGTGGTACGTCACCAACACGAGGTGA
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