mRNA_H-elongata_contig105121.426.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105121.426.1
Unique NamemRNA_H-elongata_contig105121.426.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig105121.426.1 vs. uniprot
Match: D8LQA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA3_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.040e-24
Identity = 58/104 (55.77%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    1 ALRNKRLESAIFRPTLERHCPPPGASATTKSRTGVFG--PILPSDTAVAVGRQLLSRSISYADFDDLPDPRVFQLHGDLKGWASSPSRLDFLCKELVRQRNAAV 306
            A+RN+RL+ A  RP  + H    G+     S T      P    D+  A+GRQLLSR I+YA+FD LPDP  FQLH DLKGW  SPSRLDFL KELVRQRNAA+
Sbjct: 1155 AMRNERLKHATLRPLRDNHFLQGGSRLGAASVTEPVSVPPSAALDSPAAIGRQLLSRRIAYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAI 1258
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BLAST of mRNA_H-elongata_contig105121.426.1 vs. uniprot
Match: A0A6H5L313_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L313_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 5.180e-24
Identity = 58/104 (55.77%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    1 ALRNKRLESAIFRPTLERHCPPPGASATTKSRTGVFG--PILPSDTAVAVGRQLLSRSISYADFDDLPDPRVFQLHGDLKGWASSPSRLDFLCKELVRQRNAAV 306
            A+RN+RL+ A  RP  + H    G+     S T      P    D+  A+GRQLLSR I+YA+FD LPDP  FQLH DLKGW  SPSRLDFL KELVRQRNAA+
Sbjct: 1129 AMRNERLKHATLRPLPDNHFLQGGSRLGAASVTEPVSLPPSACLDSPAAIGRQLLSRRIAYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAI 1232
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105121.426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQA3_ECTSI2.040e-2455.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L313_9PHAE5.180e-2455.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105121contigH-elongata_contig105121:1730..2035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.1233878-CDS-H-elongata_contig105121:1729..20351622929584.1233878-CDS-H-elongata_contig105121:1729..2035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105121 1730..2035 -
1691679079.9869628-CDS-H-elongata_contig105121:1729..20351691679079.9869628-CDS-H-elongata_contig105121:1729..2035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105121 1730..2035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105121.426.1prot_H-elongata_contig105121.426.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105121 1730..2035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105121.426.1

>prot_H-elongata_contig105121.426.1 ID=prot_H-elongata_contig105121.426.1|Name=mRNA_H-elongata_contig105121.426.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
ALRNKRLESAIFRPTLERHCPPPGASATTKSRTGVFGPILPSDTAVAVGR
QLLSRSISYADFDDLPDPRVFQLHGDLKGWASSPSRLDFLCKELVRQRNA
AV
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mRNA from alignment at H-elongata_contig105121:1730..2035-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105121.426.1 ID=mRNA_H-elongata_contig105121.426.1|Name=mRNA_H-elongata_contig105121.426.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig105121:1730..2035- (Himanthalia elongata Himel1 dioecious)
GCTTTGCGGAACAAGCGCCTCGAGTCGGCCATCTTTCGCCCAACGTTGGA
ACGACACTGCCCGCCTCCTGGGGCATCCGCGACCACCAAGTCGCGGACGG
GAGTCTTCGGCCCGATCCTGCCGTCAGACACCGCGGTCGCCGTCGGAAGG
CAGCTGCTAAGCCGCAGCATCTCCTACGCCGACTTCGATGATCTGCCCGA
CCCTAGAGTGTTTCAACTTCACGGCGATCTGAAGGGCTGGGCGAGCTCCC
CTTCAAGGCTAGATTTCTTGTGCAAGGAGCTTGTTCGGCAACGGAACGCG
GCGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig105121:1730..2035-

>mRNA_H-elongata_contig105121.426.1 ID=mRNA_H-elongata_contig105121.426.1|Name=mRNA_H-elongata_contig105121.426.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig105121:1730..2035- (Himanthalia elongata Himel1 dioecious)
GCTTTGCGGAACAAGCGCCTCGAGTCGGCCATCTTTCGCCCAACGTTGGA
ACGACACTGCCCGCCTCCTGGGGCATCCGCGACCACCAAGTCGCGGACGG
GAGTCTTCGGCCCGATCCTGCCGTCAGACACCGCGGTCGCCGTCGGAAGG
CAGCTGCTAAGCCGCAGCATCTCCTACGCCGACTTCGATGATCTGCCCGA
CCCTAGAGTGTTTCAACTTCACGGCGATCTGAAGGGCTGGGCGAGCTCCC
CTTCAAGGCTAGATTTCTTGTGCAAGGAGCTTGTTCGGCAACGGAACGCG
GCGGTGGCTTTGCGGAACAAGCGCCTCGAGTCGGCCATCTTTCGCCCAAC
GTTGGAACGACACTGCCCGCCTCCTGGGGCATCCGCGACCACCAAGTCGC
GGACGGGAGTCTTCGGCCCGATCCTGCCGTCAGACACCGCGGTCGCCGTC
GGAAGGCAGCTGCTAAGCCGCAGCATCTCCTACGCCGACTTCGATGATCT
GCCCGACCCTAGAGTGTTTCAACTTCACGGCGATCTGAAGGGCTGGGCGA
GCTCCCCTTCAAGGCTAGATTTCTTGTGCAAGGAGCTTGTTCGGCAACGG
AACGCGGCGGTG
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