mRNA_H-elongata_contig104195.349.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig104195.349.1
Unique NamemRNA_H-elongata_contig104195.349.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig104195.349.1 vs. uniprot
Match: A0A6H5KP08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP08_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 8.790e-31
Identity = 55/69 (79.71%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 RTPLHLACWAGQTNMIALLLNHRSDCMLTAQDGFTPLHFCAQAGCAEGCRLLLEAGAKADAKLNKNRKT 207
            RTPLHLACWAG+  MI LLL HR+DCM  AQDGFTPLHFC+QAGCAEGCRLLL AGAK DAKL K +KT
Sbjct:   41 RTPLHLACWAGKAGMIDLLLKHRADCMAEAQDGFTPLHFCSQAGCAEGCRLLLGAGAKVDAKLRKTKKT 109
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BLAST of mRNA_H-elongata_contig104195.349.1 vs. uniprot
Match: D8LFR3_ECTSI (Ion channel nompc, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR3_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 5.190e-13
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   79 MLTAQDGFTPLHFCAQAGCAEGCRLLLEAGAKADAKLNKNRKT 207
            M  AQDGFTPLHFC+QAGCA GCRLLL AGAK DAKL K +KT
Sbjct:    1 MAEAQDGFTPLHFCSQAGCAAGCRLLLGAGAKVDAKLRKTKKT 43
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BLAST of mRNA_H-elongata_contig104195.349.1 vs. uniprot
Match: A0A812RIV7_9DINO (Ripk4 protein (Fragment) n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812RIV7_9DINO)

HSP 1 Score: 65.9 bits (159), Expect = 8.910e-11
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    1 RTPLHLACWAGQTNMIALLLNHRSDCMLTAQDGFTPLHFCAQAGCAEGCRLLL-EAGAKAD---------AKLNKNRKTALHLAAAKGHAE 243
            RTPLH+A + G++  +A LL   +   L A DGF PLHF AQAG  E  RLL+ + G+K +           ++K +K+ALHLA  KGHAE
Sbjct:   31 RTPLHMAAFFGKSEAVAKLLEKGASPTLEAMDGFLPLHFAAQAGHLEVLRLLIRKVGSKGEFGEVKKHVNRVVHKGKKSALHLALLKGHAE 121
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BLAST of mRNA_H-elongata_contig104195.349.1 vs. uniprot
Match: A0A7S0ZMK3_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZMK3_NOCSC)

HSP 1 Score: 65.5 bits (158), Expect = 1.330e-10
Identity = 40/89 (44.94%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:    1 RTPLHLACWAGQTNMIALLLNHRSDCMLTAQDGFTPLHFCAQAGCAEGCRLLLEAGAKAD--------AKLNKNRKTALHLAAAKGHAE 243
            RTPLHLAC+ G+T+    LLN R+D  L A DG    HF AQ G  E  +LL+ A ++           +  K +K+ALH+A AKGHAE
Sbjct:   46 RTPLHLACYFGKTSTAESLLNARADFGLEANDGCLASHFAAQQGHKEVLQLLVRAASQGGPGSVVEFLGRAMKGKKSALHVAVAKGHAE 134
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BLAST of mRNA_H-elongata_contig104195.349.1 vs. uniprot
Match: A0A225WRI9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WRI9_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.480e-9
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:    1 RTPLHLACWAGQTNMIALLLNHRSDCMLTAQDGFTPLHFCAQAGCAEGCRLLLEAGAKADAKLNKNRKTALHLAAAKGHAE 243
            R PLH A  A   + +  LL H +D +     G+TP+H  A +G  +    L++AGA    +L K R+TALH+AA++GH +
Sbjct:   93 RRPLHFAVLASSASTVRELLAHHADVLAEDYRGWTPIHGAAYSGDVDSVTALVDAGASVTTQLTKQRETALHVAASRGHVD 173
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BLAST of mRNA_H-elongata_contig104195.349.1 vs. uniprot
Match: W6UPW2_ECHGR (Transient receptor potential cation channel subfamily A member n=1 Tax=Echinococcus granulosus TaxID=6210 RepID=W6UPW2_ECHGR)

HSP 1 Score: 57.0 bits (136), Expect = 1.330e-7
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:    4 TPLHLACWAGQTNMIALLLNHRSDCMLTAQDGFTPLHFCAQAGCAEGCRLLLEAGAKADAKLNKNRKTALHLAAAKGH 237
            TPLH+A    QT +++LL+   S  +   Q G TPLH+ AQAGC E C+++L A        +    TALH AA KGH
Sbjct:  566 TPLHIAAAHAQTQVVSLLIAKGSS-LRRCQKGRTPLHWAAQAGCLETCKVILGANTCIIDACDFRGMTALHYAAQKGH 642
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BLAST of mRNA_H-elongata_contig104195.349.1 vs. uniprot
Match: A0A087W1L7_ECHMU (Transient receptor potential cation channel n=2 Tax=Echinococcus TaxID=6209 RepID=A0A087W1L7_ECHMU)

HSP 1 Score: 57.0 bits (136), Expect = 1.330e-7
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:    4 TPLHLACWAGQTNMIALLLNHRSDCMLTAQDGFTPLHFCAQAGCAEGCRLLLEAGAKADAKLNKNRKTALHLAAAKGH 237
            TPLH+A    QT +++LL+   S  +   Q G TPLH+ AQAGC E C+++L A        +    TALH AA KGH
Sbjct:  318 TPLHIAAAHAQTQVVSLLIAKGSS-LRRCQKGRTPLHWAAQAGCLETCKVILGANTCIIDACDFRGMTALHYAAQKGH 394
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BLAST of mRNA_H-elongata_contig104195.349.1 vs. uniprot
Match: A0A7S0FY29_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FY29_9DINO)

HSP 1 Score: 54.3 bits (129), Expect = 1.110e-6
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:    4 TPLHLACWAGQTNMIALLLNHRSDCMLTAQDGFTPLHFCAQAGCAEGCRLLLEAGA 171
            TPL  A   G+   +ALLL+  +     A+DG TPLHF A AGC E C+ LL AGA
Sbjct:  223 TPLMRAAKEGRAKAVALLLDSGATPHAQAEDGMTPLHFAAAAGCRESCQALLRAGA 278
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BLAST of mRNA_H-elongata_contig104195.349.1 vs. uniprot
Match: A0A0R3WRT3_HYDTA (ANK_REP_REGION domain-containing protein n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WRT3_HYDTA)

HSP 1 Score: 50.8 bits (120), Expect = 1.120e-5
Identity = 33/79 (41.77%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:    1 RTPLHLACWAGQTNMIALLLNHRSDCMLTAQDGFTPLHFCAQAGCAEGCRLLLEAGAKADAKLNKNRKTALHLAAAKGH 237
            RTPLH+A    QT++++LL+   S      Q G TPLH+ AQAG  E C+++L A        +    TALH AA K H
Sbjct:   79 RTPLHIAAAYAQTHVVSLLIAKGSSSR-RCQKGRTPLHWAAQAGSLETCKVILGANICIIDARDFRGMTALHYAAQKDH 156
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BLAST of mRNA_H-elongata_contig104195.349.1 vs. uniprot
Match: A0A251ND80_PRUPE (PGG domain-containing protein n=2 Tax=Prunus persica TaxID=3760 RepID=A0A251ND80_PRUPE)

HSP 1 Score: 51.2 bits (121), Expect = 1.430e-5
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:    1 RTPLHLACWAGQTNMIALLLNHRSDCMLTAQD-GFTPLHFCAQAGCAEGCRLLLEAGAKADAKLNK-NRKTALHLAAAKGH 237
            RT LH A   G   M   +L  + D  + A + G+TPLH+ A +GC    + LL+A   +   ++K ++KTALH+AA++GH
Sbjct:  203 RTALHAAVIYGDEEMTLEILEKKKDLAIAADEQGWTPLHYAALSGCTSIVKQLLQADRSSAYIVDKADKKTALHIAASRGH 283
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig104195.349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KP08_9PHAE8.790e-3179.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFR3_ECTSI5.190e-1379.07Ion channel nompc, putative n=1 Tax=Ectocarpus sil... [more]
A0A812RIV7_9DINO8.910e-1145.05Ripk4 protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
A0A7S0ZMK3_NOCSC1.330e-1044.94Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A225WRI9_9STRA3.480e-938.27Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
W6UPW2_ECHGR1.330e-743.59Transient receptor potential cation channel subfam... [more]
A0A087W1L7_ECHMU1.330e-743.59Transient receptor potential cation channel n=2 Ta... [more]
A0A7S0FY29_9DINO1.110e-650.00Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A0R3WRT3_HYDTA1.120e-541.77ANK_REP_REGION domain-containing protein n=1 Tax=H... [more]
A0A251ND80_PRUPE1.430e-538.27PGG domain-containing protein n=2 Tax=Prunus persi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig104195contigH-elongata_contig104195:474..2226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue4.9e-11
Seed eggNOG ortholog2880.D8LFR3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionion channel nompc, putative
Ec32 orthologEc-01_001220.1
Exons3
Model size243
Cds size243
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig104195.349.1prot_H-elongata_contig104195.349.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig104195 474..2226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929575.46209-CDS-H-elongata_contig104195:473..5121622929575.46209-CDS-H-elongata_contig104195:473..512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104195 474..512 -
1691679076.8259969-CDS-H-elongata_contig104195:473..5121691679076.8259969-CDS-H-elongata_contig104195:473..512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104195 474..512 -
1622929575.4854658-CDS-H-elongata_contig104195:1413..15491622929575.4854658-CDS-H-elongata_contig104195:1413..1549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104195 1414..1549 -
1691679076.8348908-CDS-H-elongata_contig104195:1413..15491691679076.8348908-CDS-H-elongata_contig104195:1413..1549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104195 1414..1549 -
1622929575.4958565-CDS-H-elongata_contig104195:2158..22261622929575.4958565-CDS-H-elongata_contig104195:2158..2226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104195 2159..2226 -
1691679076.8433788-CDS-H-elongata_contig104195:2158..22261691679076.8433788-CDS-H-elongata_contig104195:2158..2226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig104195 2159..2226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig104195.349.1

>prot_H-elongata_contig104195.349.1 ID=prot_H-elongata_contig104195.349.1|Name=mRNA_H-elongata_contig104195.349.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
RTPLHLACWAGQTNMIALLLNHRSDCMLTAQDGFTPLHFCAQAGCAEGCR
LLLEAGAKADAKLNKNRKTALHLAAAKGHAE
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mRNA from alignment at H-elongata_contig104195:474..2226-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig104195.349.1 ID=mRNA_H-elongata_contig104195.349.1|Name=mRNA_H-elongata_contig104195.349.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1753bp|location=Sequence derived from alignment at H-elongata_contig104195:474..2226- (Himanthalia elongata Himel1 dioecious)
AGAACGCCCCTGCACTTGGCGTGTTGGGCGGGACAGACAAACATGATCGC
GCTTCTCCTAAATCATCGGTGAGCTATCTATCCCCCGCCCCCAACCTCTC
CCCCGCCTCAAGAGACGGGAGCAGCTTGTTTACTTGTGCTCCTCGGACAG
CATCACACTACCGTGTTTTAATTGTGTGGAGTGGTCATTTAGCTGCGTTC
TCCGCAGATTTTCCCATCTCTTCTGTAGATGTGTTCGCGCTCTCTTTGTT
ATTTTTGCTGCGGCTGGTGTTTTTCATTTTTTAATATTATTAATATTTTT
GCGATTGAGAAGCTTTCTCTCAATGTCCCTTCATTTCGCGCGCGCGGGGT
TTCATGCTGGCCCGGTTAGCGCTTTTTGTCAAGATGTTGAGGTCCGGGAC
GAAATAAAAAAGCTGCCATAGTGCTTCCTGTGAGAACAGCGAAAACATGG
CTCAACATACCCCCCACCCTCTGTCTCCCCATAATTACTGCATGCGTTTT
CCCAATTCTGCCTCGCCTCTTGTGTGGGTGTCTCTGTCTCTCTCTAATTG
TAAACATTTATAGATCGCTTGCCGCTTGCTTCTGAAGGACAATACCCACC
GTTCATAAACGAGCGCGAATGATTTCGACCCGCCCTGCTTCTGCCGTTCC
GGCCGGCCCGTTCGTGCACGCTTTCAGGAGCGACTGTATGTTGACAGCCC
AGGACGGCTTCACGCCTCTGCATTTCTGCGCGCAGGCGGGGTGTGCGGAA
GGTTGCCGGCTGCTGTTGGAGGCGGGGGCGAAGGCGGACGCTAAGCTGAA
CAAGAATCGGAAGGTGGGGTGTGTGTGTGTGAATGGATGGTAGAGAGAGA
TCAGGGGTAAATGTGTCTATTTTGTGTGATTTAGTTCATTTCAGCGGCTC
GTGTAGTGCGCGCCGTTGCTGTTGGTGAGTTATGACGTCAATACGTGAAA
AGCGTACGTGTGTGCGACAGAGGCGGGCAACAAAGCTCGTTTTTCAGAAT
TGTACATTCTTAAGGGTGAGGGGGAGGGAGTTCCAGCTTGGTCGGTGCCC
GTGTTGACTGCTGTCGCGAAAGAGTTTCGCTCTGTATAATCCATGTCCGC
GGGAGAGGCTCTGGCGCCTCTCAAAAAGCTCTAAAATCTACCGTATCTGA
GGTTATTTTCAAGGTCGGCTCTGACGGACCACGTATGTGGAATCAACTCT
TTTTAAAACCGGTTGGTTTTGTTTTTTAGTTCGGTCGCCTGTTGGACCTC
TCGAGTCAAAAGCGTGGTTGGAGCTGACGAAAAATGTTTTGCCACGATTT
CGAATGCCTGACGCTGTACGTAGCGTGGGGATAGAGTTGGAAGTGGAGGT
GACCAGTCGACCTTCGTATCTCTTTGGGCTCACTACAGGATCAGGATTGG
TGCTTGATGGATCCACGCGGCTGTTTGGACTGTCACCTTAGCCCTTGCGT
TGCTAGGGTCATGATTCCTAATGTGCACTGTGACGCTGTCACTATTGTGT
TAGCATCGTTAGTTAACATCGAGGGACGCAATCCAGAGAATCCGCCGTCC
ATTCGACTTGGTTAAGCACGACTCCACGTTACGTTCTTGCGCGCCCTTCT
TTTTTTTGTGTGTTCGTGTTCTTGGTGCTGATGGACTGTTTTTCGCCAAA
AACATACAAACAAACGTGTGCCGGAACGGTGGCATTTGGACGGTTTTAAT
CGTACTCCGCCTAGACCGCGCTTCACCTTGCGGCTGCTAAAGGCCACGCC
GAG
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Coding sequence (CDS) from alignment at H-elongata_contig104195:474..2226-

>mRNA_H-elongata_contig104195.349.1 ID=mRNA_H-elongata_contig104195.349.1|Name=mRNA_H-elongata_contig104195.349.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig104195:474..2226- (Himanthalia elongata Himel1 dioecious)
AGAACGCCCCTGCACTTGGCGTGTTGGGCGGGACAGACAAACATGATCGC
GCTTCTCCTAAATCATCGAGAACGCCCCTGCACTTGGCGTGTTGGGCGGG
ACAGACAAACATGATCGCGCTTCTCCTAAATCATCGGAGCGACTGTATGT
TGACAGCCCAGGACGGCTTCACGCCTCTGCATTTCTGCGCGCAGGCGGGG
TGTGCGGAAGGTTGCCGGCTGCTGTTGGAGGCGGGGGCGAAGGCGGACGC
TAAGCTGAACAAGAATCGGAAGGAGCGACTGTATGTTGACAGCCCAGGAC
GGCTTCACGCCTCTGCATTTCTGCGCGCAGGCGGGGTGTGCGGAAGGTTG
CCGGCTGCTGTTGGAGGCGGGGGCGAAGGCGGACGCTAAGCTGAACAAGA
ATCGGAAGACCGCGCTTCACCTTGCGGCTGCTAAAGGCCACGCCGAGACC
GCGCTTCACCTTGCGGCTGCTAAAGGCCACGCCGAG
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