mRNA_H-elongata_contig103894.329.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: A0A6A3HDW5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HDW5_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.460e-20 Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 1
Query: 13 EKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQ----GC-GLCMEAYTDSDFGACLDTRRSVSGAVLMLAR 321
EK+EM KFPYREAVG+ M+ TR D+ N VR V+R+ + PGP H N V+ + YL T+++GIT G + C + AY+D+D+ +DTRRSVSG V +AR
Sbjct: 68 EKQEMEKFPYREAVGSFMYLIVGTRPDLANFVRQVSRYLQNPGPHHWNYVVCGLKYLNVTRNFGITLGARDVTKACLAHALSAYSDADYANSVDTRRSVSGYVTYVAR 175
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: A0A6A3IVK9_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IVK9_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.130e-19 Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1
Query: 10 EEKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQ-----GCGLCMEAYTDSDFGACLDTRRSVSGAVLML 315
EEK+ M KFPYREAVG+ M+ TR D+ N +R V+R+ + PGP H N V++ + YL T+++GIT G + + AY+D+D+ +DTRRSVSG V L
Sbjct: 122 EEKQNMEKFPYREAVGSFMYLMMGTRPDLANFIRQVSRYLQNPGPHHWNYVVRGLKYLNGTRNFGITLGARDVTKASLAHALSAYSDADYANSVDTRRSVSGYVTYL 228
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: A0A6A3GWX5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GWX5_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.140e-19 Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 1
Query: 13 EKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQ----GC-GLCMEAYTDSDFGACLDTRRSVSGAVLMLAR 321
EK+EM KFPYREAVG+ M+ TR D+ N VR V+R+ + PGP H N V++ + YL T+++GIT G + C + AY+D+D+ +DTRRSVSG V +AR
Sbjct: 361 EKQEMEKFPYREAVGSFMYLIVGTRPDLANFVRQVSRYLQNPGPHHWNYVVRGLKYLNVTRNFGITLGARDVTKACLAHALSAYSDADYANSVDTRRSVSGYVTYVAR 468
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: A0A5B7BVE6_DAVIN (Uncharacterized protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BVE6_DAVIN) HSP 1 Score: 89.0 bits (219), Expect = 1.180e-19 Identity = 51/110 (46.36%), Postives = 67/110 (60.91%), Query Frame = 1
Query: 1 RNPEEKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLARGAI 330
+N E+++M PY AVG+LM+ T TR DI AV + RF PG H A K+M YL TKD+ +TY + L + Y+DSDF CLD+R+S SG V +LA GAI
Sbjct: 41 KNDLERQQMKDIPYASAVGSLMYAQTCTRPDISFAVGMLGRFQSNPGMEHWKAAKKVMRYLQGTKDYMLTYR-RSDQLDVIGYSDSDFAGCLDSRKSTSGFVFLLASGAI 149
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: UPI001C9BC1AB (secreted RxLR effector protein 161-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9BC1AB) HSP 1 Score: 89.0 bits (219), Expect = 2.630e-19 Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 4 NPEEKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLARGAI 330
N EEK M + PYREAVG LM+ A +TR DI AV V+RF PG H AV +++ Y+ TK GI Y G + AY+D+DF +DTRRS +G + ++A G +
Sbjct: 25 NDEEKVSMQEMPYREAVGCLMFAAILTRPDIMYAVSQVSRFLNNPGKEHWKAVKRILRYIQGTKYMGIKYSGSH--IDFTAYSDADFAGDVDTRRSTTGYITLMAGGPV 131
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: UPI001EDEDFDC (secreted RxLR effector protein 161-like n=1 Tax=Daphnia pulex TaxID=6669 RepID=UPI001EDEDFDC) HSP 1 Score: 88.2 bits (217), Expect = 4.270e-19 Identity = 52/108 (48.15%), Postives = 65/108 (60.19%), Query Frame = 1
Query: 10 EEKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLARGAI 330
+EKEEM K PYREAVG L++ A R DI AV V+RFCE PG H +AV ++ YL TK+ GI + G G + + DSD+ +DTRRS SG V M G I
Sbjct: 7 QEKEEMKKKPYREAVGCLIYAAITVRPDISYAVGRVSRFCEIPGRPHWSAVKHILSYLAGTKNHGICFSDGNGERNTLLGFCDSDYAGEVDTRRSTSGLVFMANNGPI 114
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: A5B0M2_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B0M2_VITVI) HSP 1 Score: 89.7 bits (221), Expect = 4.720e-19 Identity = 52/110 (47.27%), Postives = 67/110 (60.91%), Query Frame = 1
Query: 1 RNPEEKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLARGAI 330
RN E+E+M K PY AVG+LM+ T TR DI AV + R+ PG H A K+M YL TKD+ +TY + L + Y+D D+G CLD+ +S SG V MLA GAI
Sbjct: 110 RNNXEREQMKKIPYASAVGSLMYAQTCTRPDISFAVXMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDXDYGGCLDSLKSTSGFVFMLANGAI 218
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: A0A438JMN5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JMN5_VITVI) HSP 1 Score: 90.5 bits (223), Expect = 6.120e-19 Identity = 53/110 (48.18%), Postives = 68/110 (61.82%), Query Frame = 1
Query: 1 RNPEEKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLARGAI 330
RN E+E+M K PY AVG+LM+ T TR DI AV + R+ PG H A K+M YL TKD+ +TY + L + Y+DSD+G CLD+ +S SG V MLA GAI
Sbjct: 280 RNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAI 388
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI) HSP 1 Score: 90.5 bits (223), Expect = 6.280e-19 Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 1
Query: 1 RNPEEKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLARGAI 330
+N EK++M +FPY AVG+LM+ TR DI V + R+ PG H ++M YL TKD+ +TY + L + AY+DSDF CLD+RRS SG + MLA GA+
Sbjct: 293 KNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYR-RSSHLEIVAYSDSDFAGCLDSRRSTSGCIFMLAGGAV 401
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: A5BKB9_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BKB9_VITVI) HSP 1 Score: 90.5 bits (223), Expect = 6.990e-19 Identity = 53/110 (48.18%), Postives = 68/110 (61.82%), Query Frame = 1
Query: 1 RNPEEKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLARGAI 330
RN E+E+M K PY AVG+LM+ T TR DI AV + R+ PG H A K+M YL TKD+ +TY + L + Y+DSD+G CLD+ +S SG V MLA GAI
Sbjct: 961 RNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAI 1069 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103894.329.1 >prot_H-elongata_contig103894.329.1 ID=prot_H-elongata_contig103894.329.1|Name=mRNA_H-elongata_contig103894.329.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp MTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMMback to top mRNA from alignment at H-elongata_contig103894:2..331- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103894.329.1 ID=mRNA_H-elongata_contig103894.329.1|Name=mRNA_H-elongata_contig103894.329.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at H-elongata_contig103894:2..331- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103894:2..331- >mRNA_H-elongata_contig103894.329.1 ID=mRNA_H-elongata_contig103894.329.1|Name=mRNA_H-elongata_contig103894.329.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig103894:2..331- (Himanthalia elongata Himel1 dioecious)back to top |