mRNA_H-elongata_contig103894.329.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103894.329.1
Unique NamemRNA_H-elongata_contig103894.329.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: A0A6A3HDW5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HDW5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.460e-20
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 1
Query:   13 EKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQ----GC-GLCMEAYTDSDFGACLDTRRSVSGAVLMLAR 321
            EK+EM KFPYREAVG+ M+    TR D+ N VR V+R+ + PGP H N V+  + YL  T+++GIT G +     C    + AY+D+D+   +DTRRSVSG V  +AR
Sbjct:   68 EKQEMEKFPYREAVGSFMYLIVGTRPDLANFVRQVSRYLQNPGPHHWNYVVCGLKYLNVTRNFGITLGARDVTKACLAHALSAYSDADYANSVDTRRSVSGYVTYVAR 175          
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: A0A6A3IVK9_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IVK9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.130e-19
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   10 EEKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQ-----GCGLCMEAYTDSDFGACLDTRRSVSGAVLML 315
            EEK+ M KFPYREAVG+ M+    TR D+ N +R V+R+ + PGP H N V++ + YL  T+++GIT G +          + AY+D+D+   +DTRRSVSG V  L
Sbjct:  122 EEKQNMEKFPYREAVGSFMYLMMGTRPDLANFIRQVSRYLQNPGPHHWNYVVRGLKYLNGTRNFGITLGARDVTKASLAHALSAYSDADYANSVDTRRSVSGYVTYL 228          
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: A0A6A3GWX5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GWX5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.140e-19
Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 1
Query:   13 EKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQ----GC-GLCMEAYTDSDFGACLDTRRSVSGAVLMLAR 321
            EK+EM KFPYREAVG+ M+    TR D+ N VR V+R+ + PGP H N V++ + YL  T+++GIT G +     C    + AY+D+D+   +DTRRSVSG V  +AR
Sbjct:  361 EKQEMEKFPYREAVGSFMYLIVGTRPDLANFVRQVSRYLQNPGPHHWNYVVRGLKYLNVTRNFGITLGARDVTKACLAHALSAYSDADYANSVDTRRSVSGYVTYVAR 468          
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: A0A5B7BVE6_DAVIN (Uncharacterized protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BVE6_DAVIN)

HSP 1 Score: 89.0 bits (219), Expect = 1.180e-19
Identity = 51/110 (46.36%), Postives = 67/110 (60.91%), Query Frame = 1
Query:    1 RNPEEKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLARGAI 330
            +N  E+++M   PY  AVG+LM+  T TR DI  AV  + RF   PG  H  A  K+M YL  TKD+ +TY  +   L +  Y+DSDF  CLD+R+S SG V +LA GAI
Sbjct:   41 KNDLERQQMKDIPYASAVGSLMYAQTCTRPDISFAVGMLGRFQSNPGMEHWKAAKKVMRYLQGTKDYMLTYR-RSDQLDVIGYSDSDFAGCLDSRKSTSGFVFLLASGAI 149          
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: UPI001C9BC1AB (secreted RxLR effector protein 161-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9BC1AB)

HSP 1 Score: 89.0 bits (219), Expect = 2.630e-19
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    4 NPEEKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLARGAI 330
            N EEK  M + PYREAVG LM+ A +TR DI  AV  V+RF   PG  H  AV +++ Y+  TK  GI Y G    +   AY+D+DF   +DTRRS +G + ++A G +
Sbjct:   25 NDEEKVSMQEMPYREAVGCLMFAAILTRPDIMYAVSQVSRFLNNPGKEHWKAVKRILRYIQGTKYMGIKYSGSH--IDFTAYSDADFAGDVDTRRSTTGYITLMAGGPV 131          
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: UPI001EDEDFDC (secreted RxLR effector protein 161-like n=1 Tax=Daphnia pulex TaxID=6669 RepID=UPI001EDEDFDC)

HSP 1 Score: 88.2 bits (217), Expect = 4.270e-19
Identity = 52/108 (48.15%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   10 EEKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLARGAI 330
            +EKEEM K PYREAVG L++ A   R DI  AV  V+RFCE PG  H +AV  ++ YL  TK+ GI +  G G    +  + DSD+   +DTRRS SG V M   G I
Sbjct:    7 QEKEEMKKKPYREAVGCLIYAAITVRPDISYAVGRVSRFCEIPGRPHWSAVKHILSYLAGTKNHGICFSDGNGERNTLLGFCDSDYAGEVDTRRSTSGLVFMANNGPI 114          
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: A5B0M2_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B0M2_VITVI)

HSP 1 Score: 89.7 bits (221), Expect = 4.720e-19
Identity = 52/110 (47.27%), Postives = 67/110 (60.91%), Query Frame = 1
Query:    1 RNPEEKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLARGAI 330
            RN  E+E+M K PY  AVG+LM+  T TR DI  AV  + R+   PG  H  A  K+M YL  TKD+ +TY  +   L +  Y+D D+G CLD+ +S SG V MLA GAI
Sbjct:  110 RNNXEREQMKKIPYASAVGSLMYAQTCTRPDISFAVXMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDXDYGGCLDSLKSTSGFVFMLANGAI 218          
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: A0A438JMN5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JMN5_VITVI)

HSP 1 Score: 90.5 bits (223), Expect = 6.120e-19
Identity = 53/110 (48.18%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 RNPEEKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLARGAI 330
            RN  E+E+M K PY  AVG+LM+  T TR DI  AV  + R+   PG  H  A  K+M YL  TKD+ +TY  +   L +  Y+DSD+G CLD+ +S SG V MLA GAI
Sbjct:  280 RNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAI 388          
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI)

HSP 1 Score: 90.5 bits (223), Expect = 6.280e-19
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 1
Query:    1 RNPEEKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLARGAI 330
            +N  EK++M +FPY  AVG+LM+    TR DI   V  + R+   PG  H     ++M YL  TKD+ +TY  +   L + AY+DSDF  CLD+RRS SG + MLA GA+
Sbjct:  293 KNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYR-RSSHLEIVAYSDSDFAGCLDSRRSTSGCIFMLAGGAV 401          
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Match: A5BKB9_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BKB9_VITVI)

HSP 1 Score: 90.5 bits (223), Expect = 6.990e-19
Identity = 53/110 (48.18%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 RNPEEKEEMTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM*YLLHTKDWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLARGAI 330
            RN  E+E+M K PY  AVG+LM+  T TR DI  AV  + R+   PG  H  A  K+M YL  TKD+ +TY  +   L +  Y+DSD+G CLD+ +S SG V MLA GAI
Sbjct:  961 RNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAI 1069          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103894.329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3HDW5_9STRA1.460e-2047.22Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6A3IVK9_9STRA1.130e-1944.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3GWX5_9STRA1.140e-1947.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5B7BVE6_DAVIN1.180e-1946.36Uncharacterized protein (Fragment) n=1 Tax=Davidia... [more]
UPI001C9BC1AB2.630e-1944.95secreted RxLR effector protein 161-like n=1 Tax=Ve... [more]
UPI001EDEDFDC4.270e-1948.15secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A5B0M2_VITVI4.720e-1947.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438JMN5_VITVI6.120e-1948.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HUL4_VITVI6.280e-1944.55Retrovirus-related Pol polyprotein from transposon... [more]
A5BKB9_VITVI6.990e-1948.18Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103894contigH-elongata_contig103894:2..331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size330
Cds size153
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103894.329.1prot_H-elongata_contig103894.329.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103894 155..307 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929573.3903809-UTR-H-elongata_contig103894:1..1541622929573.3903809-UTR-H-elongata_contig103894:1..154Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103894 2..154 -
1691679076.0355217-UTR-H-elongata_contig103894:1..1541691679076.0355217-UTR-H-elongata_contig103894:1..154Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103894 2..154 -
1622929573.419999-UTR-H-elongata_contig103894:307..3311622929573.419999-UTR-H-elongata_contig103894:307..331Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103894 308..331 -
1691679076.056089-UTR-H-elongata_contig103894:307..3311691679076.056089-UTR-H-elongata_contig103894:307..331Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103894 308..331 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929573.4050128-CDS-H-elongata_contig103894:154..3071622929573.4050128-CDS-H-elongata_contig103894:154..307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103894 155..307 -
1691679076.0445867-CDS-H-elongata_contig103894:154..3071691679076.0445867-CDS-H-elongata_contig103894:154..307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103894 155..307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103894.329.1

>prot_H-elongata_contig103894.329.1 ID=prot_H-elongata_contig103894.329.1|Name=mRNA_H-elongata_contig103894.329.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MTKFPYREAVGALMWTATITRLDIENAVRAVARFCEKPGPAHKNAVMKMM
*
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mRNA from alignment at H-elongata_contig103894:2..331-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103894.329.1 ID=mRNA_H-elongata_contig103894.329.1|Name=mRNA_H-elongata_contig103894.329.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at H-elongata_contig103894:2..331- (Himanthalia elongata Himel1 dioecious)
CGGAACCCGGAGGAGAAGGAGGAAATGACGAAGTTTCCATACCGGGAAGC AGTGGGGGCGCTTATGTGGACGGCGACGATTACACGGCTGGACATTGAGA ACGCAGTACGCGCTGTGGCTAGGTTCTGCGAAAAACCTGGGCCTGCGCAT AAAAATGCAGTGATGAAGATGATGTAGTATCTTCTTCACACGAAGGATTG GGGGATTACATACGGTGGACAGGGCTGTGGACTTTGCATGGAGGCATACA CGGACTCGGACTTTGGAGCCTGCCTGGATACGAGACGATCGGTGTCAGGT GCGGTGTTGATGCTGGCGAGGGGGGCGATC
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Coding sequence (CDS) from alignment at H-elongata_contig103894:2..331-

>mRNA_H-elongata_contig103894.329.1 ID=mRNA_H-elongata_contig103894.329.1|Name=mRNA_H-elongata_contig103894.329.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig103894:2..331- (Himanthalia elongata Himel1 dioecious)
ATGACGAAGTTTCCATACCGGGAAGCAGTGGGGGCGCTTATGTGGACGGC
GACGATTACACGGCTGGACATTGAGAACGCAGTACGCGCTGTGGCTAGGT
TCTGCGAAAAACCTGGGCCTGCGCATAAAAATGCAGTGATGAAGATGATG
TAGATGACGAAGTTTCCATACCGGGAAGCAGTGGGGGCGCTTATGTGGAC
GGCGACGATTACACGGCTGGACATTGAGAACGCAGTACGCGCTGTGGCTA
GGTTCTGCGAAAAACCTGGGCCTGCGCATAAAAATGCAGTGATGAAGATG
ATGTAG
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