mRNA_H-elongata_contig103845.325.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103845.325.1
Unique NamemRNA_H-elongata_contig103845.325.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig103845.325.1 vs. uniprot
Match: A0A2P4YHC9_9STRA (Splicing factor 3B subunit 1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHC9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.110e-25
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 TACTTVKHLSLGVAMLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIE 147
            TACTTVKHL+LGVA LGCEDALVHLLNFVWPNIFETSPHVINAVFEA+E
Sbjct:   55 TACTTVKHLALGVAGLGCEDALVHLLNFVWPNIFETSPHVINAVFEAVE 103
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BLAST of mRNA_H-elongata_contig103845.325.1 vs. uniprot
Match: D7FI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI13_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 3.180e-25
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 TACTTVKHLSLGVAMLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIE 147
            TACTTVKHLSLGVAMLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIE
Sbjct:  442 TACTTVKHLSLGVAMLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIE 490
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BLAST of mRNA_H-elongata_contig103845.325.1 vs. uniprot
Match: A0A6H5JJ74_9PHAE (TOG domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ74_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.710e-25
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 TACTTVKHLSLGVAMLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIE 147
            TACTTVKHLSLGVAMLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIE
Sbjct: 1259 TACTTVKHLSLGVAMLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIE 1307
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BLAST of mRNA_H-elongata_contig103845.325.1 vs. uniprot
Match: A0A5D6XVH6_9STRA (SF3b1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVH6_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.140e-23
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 TACTTVKHLSLGVAMLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIE 147
            TACTTVKHL+LGVA LGCEDALVHLLNFVWPNIFETSPHVINAVFEAIE
Sbjct: 1153 TACTTVKHLALGVAGLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIE 1201
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BLAST of mRNA_H-elongata_contig103845.325.1 vs. uniprot
Match: K3WVF4_GLOUD (SF3b1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVF4_GLOUD)

HSP 1 Score: 99.4 bits (246), Expect = 5.410e-23
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 TACTTVKHLSLGVAMLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIE 147
            TACTTVKH++LGVA LGCEDALVHLLN+VWPNIFETSPHVINAVFEAIE
Sbjct: 1137 TACTTVKHIALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVFEAIE 1185
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BLAST of mRNA_H-elongata_contig103845.325.1 vs. uniprot
Match: M4BK12_HYAAE (INTEIN_C_TER domain-containing protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=M4BK12_HYAAE)

HSP 1 Score: 99.4 bits (246), Expect = 5.410e-23
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 TACTTVKHLSLGVAMLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIE 147
            TACTTVKHL+LGV  LGCEDALVHLLNFVWPNIFETSPHVINAVFEA+E
Sbjct: 1292 TACTTVKHLALGVTGLGCEDALVHLLNFVWPNIFETSPHVINAVFEAVE 1340
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BLAST of mRNA_H-elongata_contig103845.325.1 vs. uniprot
Match: H3G976_PHYRM (SF3b1 domain-containing protein n=20 Tax=Peronosporaceae TaxID=4777 RepID=H3G976_PHYRM)

HSP 1 Score: 98.6 bits (244), Expect = 1.010e-22
Identity = 44/49 (89.80%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 TACTTVKHLSLGVAMLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIE 147
            TACTTVKHL+LGVA LGCEDAL+HLLNFVWPNIFETSPHVINAV+EA+E
Sbjct: 1112 TACTTVKHLALGVAGLGCEDALLHLLNFVWPNIFETSPHVINAVYEAVE 1160
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BLAST of mRNA_H-elongata_contig103845.325.1 vs. uniprot
Match: G5A4J4_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=G5A4J4_PHYSP)

HSP 1 Score: 98.2 bits (243), Expect = 1.380e-22
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 TACTTVKHLSLGVAMLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIE 147
            TACTTVKHL+LGV  LGCEDAL+HLLNFVWPNIFETSPHVINAVFEA+E
Sbjct:  748 TACTTVKHLALGVVGLGCEDALLHLLNFVWPNIFETSPHVINAVFEAVE 796
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BLAST of mRNA_H-elongata_contig103845.325.1 vs. uniprot
Match: A0A024G627_9STRA (SF3b1 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G627_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.570e-22
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 TACTTVKHLSLGVAMLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEVLCR 159
            TACTTVKH++LGVA LGCEDALVHLLN+VWPNIFETSPHVINAVF+AI V CR
Sbjct: 1124 TACTTVKHIALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVFDAI-VGCR 1175
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BLAST of mRNA_H-elongata_contig103845.325.1 vs. uniprot
Match: F0W6T1_9STRA (Uncharacterized protein AlNc14C26G2567 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6T1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.500e-22
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 TACTTVKHLSLGVAMLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEVLCR 159
            TACTTVKH++LGVA LGCEDALVHLLN+VWPNIFETSPHVINAVF+A+ V CR
Sbjct: 1120 TACTTVKHIALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVFDAV-VGCR 1171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103845.325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P4YHC9_9STRA1.110e-2593.88Splicing factor 3B subunit 1 n=1 Tax=Phytophthora ... [more]
D7FI13_ECTSI3.180e-25100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ74_9PHAE3.710e-25100.00TOG domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A5D6XVH6_9STRA1.140e-2395.92SF3b1 domain-containing protein n=1 Tax=Pythium br... [more]
K3WVF4_GLOUD5.410e-2391.84SF3b1 domain-containing protein n=1 Tax=Globispora... [more]
M4BK12_HYAAE5.410e-2391.84INTEIN_C_TER domain-containing protein n=3 Tax=Per... [more]
H3G976_PHYRM1.010e-2289.80SF3b1 domain-containing protein n=20 Tax=Peronospo... [more]
G5A4J4_PHYSP1.380e-2289.80Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A024G627_9STRA2.570e-2286.79SF3b1 domain-containing protein n=1 Tax=Albugo can... [more]
F0W6T1_9STRA3.500e-2284.91Uncharacterized protein AlNc14C26G2567 n=1 Tax=Alb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103845contigH-elongata_contig103845:756..917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue2.7e-21
Seed eggNOG ortholog2880.D7FI13
Preferred nameSF3B1
KEGG koko:K12828
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0001701,GO:0001824,GO:0001825,GO:0003002,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0005694,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009790,GO:0009792,GO:0009892,GO:0009893,GO:0009952,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034399,GO:0034622,GO:0034641,GO:0034693,GO:0040029,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0048519,GO:0048646,GO:0048856,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071005,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsCOG5181@1,KOG0213@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929573.081548-CDS-H-elongata_contig103845:755..9171622929573.081548-CDS-H-elongata_contig103845:755..917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103845 756..917 -
1691679075.8729541-CDS-H-elongata_contig103845:755..9171691679075.8729541-CDS-H-elongata_contig103845:755..917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103845 756..917 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103845.325.1prot_H-elongata_contig103845.325.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103845 756..917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103845.325.1

>prot_H-elongata_contig103845.325.1 ID=prot_H-elongata_contig103845.325.1|Name=mRNA_H-elongata_contig103845.325.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
TACTTVKHLSLGVAMLGCEDALVHLLNFVWPNIFETSPHVINAVFEAIEV
LCR*
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mRNA from alignment at H-elongata_contig103845:756..917-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103845.325.1 ID=mRNA_H-elongata_contig103845.325.1|Name=mRNA_H-elongata_contig103845.325.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig103845:756..917- (Himanthalia elongata Himel1 dioecious)
ACGGCCTGTACGACCGTGAAGCATCTATCGCTCGGCGTGGCGATGCTAGG
CTGCGAGGATGCCCTGGTGCATCTCCTCAACTTTGTGTGGCCCAACATCT
TCGAGACCAGCCCCCACGTCATCAACGCCGTGTTTGAAGCAATCGAGGTA
CTGTGTAGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig103845:756..917-

>mRNA_H-elongata_contig103845.325.1 ID=mRNA_H-elongata_contig103845.325.1|Name=mRNA_H-elongata_contig103845.325.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig103845:756..917- (Himanthalia elongata Himel1 dioecious)
ACGGCCTGTACGACCGTGAAGCATCTATCGCTCGGCGTGGCGATGCTAGG
CTGCGAGGATGCCCTGGTGCATCTCCTCAACTTTGTGTGGCCCAACATCT
TCGAGACCAGCCCCCACGTCATCAACGCCGTGTTTGAAGCAATCGAGGTA
CTGTGTAGATGAACGGCCTGTACGACCGTGAAGCATCTATCGCTCGGCGT
GGCGATGCTAGGCTGCGAGGATGCCCTGGTGCATCTCCTCAACTTTGTGT
GGCCCAACATCTTCGAGACCAGCCCCCACGTCATCAACGCCGTGTTTGAA
GCAATCGAGGTACTGTGTAGATGA
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