mRNA_H-elongata_contig103781.319.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: D7G873_ECTSI (Chromodomain-helicase-DNA-binding protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G873_ECTSI) HSP 1 Score: 217 bits (552), Expect = 3.440e-63 Identity = 105/110 (95.45%), Postives = 110/110 (100.00%), Query Frame = 1 Query: 1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITRN 330 +VLIFSQFIGMLDMVQEFL+LRGH+HERLDGRTTGNERQKSIDRFNR+PNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITR+ Sbjct: 2345 KVLIFSQFIGMLDMVQEFLSLRGHKHERLDGRTTGNERQKSIDRFNRDPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITRD 2454
BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: A0A836CJJ2_9STRA (SNF2 family N-terminal domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJJ2_9STRA) HSP 1 Score: 183 bits (465), Expect = 1.920e-53 Identity = 87/109 (79.82%), Postives = 99/109 (90.83%), Query Frame = 1 Query: 1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITR 327 +VL+FSQFIGMLD++ E+ +L G HERLDGR TGNERQ++IDRFNR+P SF+FLLSTRAGGVGINLTAAD CII+DSDWNPQNDVQAMARCHRIGQTK V +YRLITR Sbjct: 383 KVLLFSQFIGMLDIIGEYASLSGIPHERLDGRITGNERQRAIDRFNRDPASFLFLLSTRAGGVGINLTAADVCIIFDSDWNPQNDVQAMARCHRIGQTKQVAIYRLITR 491
BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: K0TFF6_THAOC (Helicase C-terminal domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TFF6_THAOC) HSP 1 Score: 172 bits (435), Expect = 2.300e-50 Identity = 80/108 (74.07%), Postives = 92/108 (85.19%), Query Frame = 1 Query: 1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLIT 324 +VLIFSQF+ MLD++ ++ R RHERLDGR G ERQK+IDRF E +SF+FLLSTRAGGVGINLTAAD CII+DSDWNPQNDVQA ARCHRIGQTK VM+YRL+T Sbjct: 22 KVLIFSQFVKMLDLISDYCTFRDFRHERLDGRVRGTERQKAIDRFETEEDSFIFLLSTRAGGVGINLTAADICIIFDSDWNPQNDVQAQARCHRIGQTKDVMIYRLVT 129
BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: A0A7S3UZC9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZC9_HETAK) HSP 1 Score: 174 bits (442), Expect = 5.220e-50 Identity = 85/109 (77.98%), Postives = 96/109 (88.07%), Query Frame = 1 Query: 1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITR 327 +VL FSQ + +LD+++EF RG+ ERLDGR TGN RQ+SIDRFNR+P+SFVFLLSTRAGGVGINLTAADT II+DSDWNPQNDVQA ARCHRIGQTK VMVYRLITR Sbjct: 391 RVLFFSQMVRVLDLLEEFCEYRGYPCERLDGRITGNARQESIDRFNRDPDSFVFLLSTRAGGVGINLTAADTVIIFDSDWNPQNDVQAQARCHRIGQTKDVMVYRLITR 499
BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: A0A812VYK8_SYMMI (Chd6 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VYK8_SYMMI) HSP 1 Score: 172 bits (436), Expect = 8.390e-49 Identity = 81/109 (74.31%), Postives = 95/109 (87.16%), Query Frame = 1 Query: 1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITR 327 +VLIFSQ + M+D + E+ +RG+ ERLDGR GN+RQK+IDRFN +P SF+FLLSTRAGGVGINLTAADT II+DSDWNPQNDVQAMARCHRIGQ+K+V VYRLITR Sbjct: 209 KVLIFSQMVKMIDFIDEYCLIRGYNRERLDGRVRGNDRQKAIDRFNMDPASFIFLLSTRAGGVGINLTAADTVIIFDSDWNPQNDVQAMARCHRIGQSKNVTVYRLITR 317
BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: A0A7S2DNW9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DNW9_9STRA) HSP 1 Score: 167 bits (423), Expect = 1.000e-48 Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 1 Query: 1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITR 327 +VLIFSQ + MLD+++E+ + + ERLDG+ TG ERQK++DRFN+ +SFVFLLSTRAGGVGINLTAADTCII+DSDWNPQNDVQAMARCHRIGQ K VM+YRL+TR Sbjct: 232 KVLIFSQMVRMLDLLEEYCLKKLYSVERLDGKVTGKERQKAMDRFNQNADSFVFLLSTRAGGVGINLTAADTCIIFDSDWNPQNDVQAMARCHRIGQKKKVMIYRLVTR 340
BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: A0A7S2EV94_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EV94_9STRA) HSP 1 Score: 173 bits (438), Expect = 7.800e-48 Identity = 82/108 (75.93%), Postives = 93/108 (86.11%), Query Frame = 1 Query: 1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLIT 324 +VLIFSQ + MLD++ ++ RG RHERLDGR GNERQK+IDRF E +SF+FLLSTRAGGVGINLTAAD CII+DSDWNPQNDVQA ARCHRIGQTK VM+YRLIT Sbjct: 1420 KVLIFSQMVKMLDLISDYCDFRGFRHERLDGRVRGNERQKAIDRFETEHDSFLFLLSTRAGGVGINLTAADICIIFDSDWNPQNDVQAQARCHRIGQTKDVMIYRLIT 1527
BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: B8LC70_THAPS (Chromodomain-helicase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LC70_THAPS) HSP 1 Score: 171 bits (433), Expect = 9.480e-48 Identity = 81/108 (75.00%), Postives = 93/108 (86.11%), Query Frame = 1 Query: 1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLIT 324 +VLIFSQF+ MLD++ ++ R R+ERLDGR GNERQK+IDRF E +SFVFLLSTRAGGVGINLTAAD CII+DSDWNPQNDVQA ARCHRIGQTK VM+YRL+T Sbjct: 440 KVLIFSQFVKMLDLISDYCDFREFRYERLDGRVRGNERQKAIDRFETEKDSFVFLLSTRAGGVGINLTAADICIIFDSDWNPQNDVQAQARCHRIGQTKDVMIYRLVT 547
BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: W7TC43_9STRA (Chromodomain-helicase-dna-binding protein 7 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TC43_9STRA) HSP 1 Score: 172 bits (435), Expect = 1.980e-47 Identity = 84/109 (77.06%), Postives = 96/109 (88.07%), Query Frame = 1 Query: 1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITR 327 ++LIFSQ I +LD+++EF RG ERLDGR TGN+RQ++IDRFN +P+SFVFLLSTRAGGVGINLTAADT II+DSDWNPQNDVQAMARCHRIGQTK V VYRLITR Sbjct: 1586 RLLIFSQMIKVLDLLEEFCERRGFPVERLDGRVTGNQRQQAIDRFNTDPDSFVFLLSTRAGGVGINLTAADTVIIFDSDWNPQNDVQAMARCHRIGQTKEVQVYRLITR 1694
BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Match: A0A7R9YC09_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC09_9STRA) HSP 1 Score: 171 bits (432), Expect = 4.950e-47 Identity = 85/109 (77.98%), Postives = 93/109 (85.32%), Query Frame = 1 Query: 1 QVLIFSQFIGMLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAGGVGINLTAADTCIIYDSDWNPQNDVQAMARCHRIGQTKSVMVYRLITR 327 +VLIFSQ + MLD++Q+F RG ERLDG TGN+RQK+IDRFN +SFVFLLSTRAGGVGINLTAADT IIYDSDWNPQNDVQAMARCHRIGQTK V VYRLITR Sbjct: 625 KVLIFSQMVRMLDLLQDFCGHRGFSCERLDGAITGNDRQKAIDRFNTREDSFVFLLSTRAGGVGINLTAADTVIIYDSDWNPQNDVQAMARCHRIGQTKDVRVYRLITR 733 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103781.319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103781.319.1 >prot_H-elongata_contig103781.319.1 ID=prot_H-elongata_contig103781.319.1|Name=mRNA_H-elongata_contig103781.319.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp MLDMVQEFLALRGHRHERLDGRTTGNERQKSIDRFNREPNSFVFLLSTRAback to top mRNA from alignment at H-elongata_contig103781:1092..1878- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103781.319.1 ID=mRNA_H-elongata_contig103781.319.1|Name=mRNA_H-elongata_contig103781.319.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=787bp|location=Sequence derived from alignment at H-elongata_contig103781:1092..1878- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103781:1092..1878- >mRNA_H-elongata_contig103781.319.1 ID=mRNA_H-elongata_contig103781.319.1|Name=mRNA_H-elongata_contig103781.319.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig103781:1092..1878- (Himanthalia elongata Himel1 dioecious)back to top |