mRNA_H-elongata_contig103760.317.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103760.317.1
Unique NamemRNA_H-elongata_contig103760.317.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig103760.317.1 vs. uniprot
Match: K3WJU9_GLOUD (Raptor_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJU9_GLOUD)

HSP 1 Score: 60.1 bits (144), Expect = 4.070e-9
Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 QILSSDGEELSRITSYNGFAANRLGSMSCLAFHPNELILAAGDSASIVSLFAPD 162
            ++  SDGE+L+ I  + GF   R+G +SCLAFHP+ L LAAG + S+V+++A D
Sbjct: 1434 KVFKSDGEQLALIRYHEGFLGERIGPVSCLAFHPHRLFLAAGATDSVVAIYASD 1487
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BLAST of mRNA_H-elongata_contig103760.317.1 vs. uniprot
Match: A0A5D6YCM0_9STRA (Raptor_N domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCM0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.040e-8
Identity = 25/54 (46.30%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 QILSSDGEELSRITSYNGFAANRLGSMSCLAFHPNELILAAGDSASIVSLFAPD 162
            ++  SDGE+L+ I  + GF   R+G +SCLAFHP+ L+LA+G + S+V+++A D
Sbjct: 1375 KVFKSDGEQLALIRYHEGFLGERIGPVSCLAFHPHRLLLASGATDSVVAVYAGD 1428
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BLAST of mRNA_H-elongata_contig103760.317.1 vs. uniprot
Match: A0A2D4BQ72_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQ72_PYTIN)

HSP 1 Score: 58.5 bits (140), Expect = 1.420e-8
Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 QILSSDGEELSRITSYNGFAANRLGSMSCLAFHPNELILAAGDSASIVSLFAPD 162
            ++  SDGE+L+ I  + GF   R+G +SCLAFHP+ L LAAG + S+V++++ D
Sbjct:  790 KVFRSDGEQLALIRHHEGFLGERIGPVSCLAFHPHRLYLAAGATDSVVAIYSSD 843
[Close]
BLAST of mRNA_H-elongata_contig103760.317.1 vs. uniprot
Match: A0A2D4CI46_PYTIN (Regulatory-associated protein of mTOR n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CI46_PYTIN)

HSP 1 Score: 58.5 bits (140), Expect = 1.420e-8
Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 QILSSDGEELSRITSYNGFAANRLGSMSCLAFHPNELILAAGDSASIVSLFAPD 162
            ++  SDGE+L+ I  + GF   R+G +SCLAFHP+ L LAAG + S+V++++ D
Sbjct: 1246 KVFRSDGEQLALIRHHEGFLGERIGPVSCLAFHPHRLYLAAGATDSVVAIYSSD 1299
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BLAST of mRNA_H-elongata_contig103760.317.1 vs. uniprot
Match: A0A6A3UUR4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3UUR4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.920e-8
Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 QILSSDGEELSRITSYNGFAANRLGSMSCLAFHPNELILAAGDSASIVSLFAPDD 165
            ++  SDGE+L+ I  + GF   R+G +SCLAFHP  L LAAG + S+V++++ D+
Sbjct:  389 KVFRSDGEQLALIRYHEGFLGERIGPVSCLAFHPRRLFLAAGATDSVVAVYSSDN 443
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BLAST of mRNA_H-elongata_contig103760.317.1 vs. uniprot
Match: A0A6A4AGY7_9STRA (Raptor_N domain-containing protein n=7 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4AGY7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.940e-8
Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 QILSSDGEELSRITSYNGFAANRLGSMSCLAFHPNELILAAGDSASIVSLFAPDD 165
            ++  SDGE+L+ I  + GF   R+G +SCLAFHP  L LAAG + S+V++++ D+
Sbjct:  747 KVFRSDGEQLALIRYHEGFLGERIGPVSCLAFHPRRLFLAAGATDSVVAVYSSDN 801
[Close]
BLAST of mRNA_H-elongata_contig103760.317.1 vs. uniprot
Match: A0A6G0SMU2_9STRA (Regulatory-associated protein of n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0SMU2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.940e-8
Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 QILSSDGEELSRITSYNGFAANRLGSMSCLAFHPNELILAAGDSASIVSLFAPDD 165
            ++  SDGE+L+ I  + GF   R+G +SCLAFHP  L LAAG + S+V++++ D+
Sbjct:  992 KVFRSDGEQLALIRYHEGFLGERIGPVSCLAFHPRRLFLAAGATDSVVAVYSSDN 1046
[Close]
BLAST of mRNA_H-elongata_contig103760.317.1 vs. uniprot
Match: A0A8J5IKW7_9STRA (Raptor_N domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IKW7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.940e-8
Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 QILSSDGEELSRITSYNGFAANRLGSMSCLAFHPNELILAAGDSASIVSLFAPD 162
            ++  SDGE+L+ I  + GF   R+G +SCLAFHP+ L LAAG + S+V++++ D
Sbjct: 1051 KVFRSDGEQLALIRYHEGFLGERIGPVSCLAFHPHRLFLAAGATDSVVAVYSSD 1104
[Close]
BLAST of mRNA_H-elongata_contig103760.317.1 vs. uniprot
Match: H3G5Z2_PHYRM (Raptor_N domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=H3G5Z2_PHYRM)

HSP 1 Score: 58.2 bits (139), Expect = 1.940e-8
Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 QILSSDGEELSRITSYNGFAANRLGSMSCLAFHPNELILAAGDSASIVSLFAPD 162
            ++  SDGE+L+ I  + GF   R+G +SCLAFHP+ L LAAG + S+V++++ D
Sbjct: 1173 KVFRSDGEQLALIRYHEGFLGERIGPVSCLAFHPHRLFLAAGATDSVVAVYSSD 1226
[Close]
BLAST of mRNA_H-elongata_contig103760.317.1 vs. uniprot
Match: A0A3M6VLU6_9STRA (Raptor_N domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VLU6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.950e-8
Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 QILSSDGEELSRITSYNGFAANRLGSMSCLAFHPNELILAAGDSASIVSLFAPD 162
            ++  SDGE+L+ I  + GF   R+G +SCLAFHP+ L LAAG + S+V++++ D
Sbjct: 1402 KVFRSDGEQLALIRYHEGFLGERIGPISCLAFHPHRLFLAAGATDSVVAVYSSD 1455
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103760.317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K3WJU9_GLOUD4.070e-948.15Raptor_N domain-containing protein n=1 Tax=Globisp... [more]
A0A5D6YCM0_9STRA1.040e-846.30Raptor_N domain-containing protein n=1 Tax=Pythium... [more]
A0A2D4BQ72_PYTIN1.420e-846.30Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A2D4CI46_PYTIN1.420e-846.30Regulatory-associated protein of mTOR n=1 Tax=Pyth... [more]
A0A6A3UUR4_9STRA1.920e-845.45Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A6A4AGY7_9STRA1.940e-845.45Raptor_N domain-containing protein n=7 Tax=Phytoph... [more]
A0A6G0SMU2_9STRA1.940e-845.45Regulatory-associated protein of n=1 Tax=Phytophth... [more]
A0A8J5IKW7_9STRA1.940e-846.30Raptor_N domain-containing protein n=1 Tax=Phytoph... [more]
H3G5Z2_PHYRM1.940e-846.30Raptor_N domain-containing protein n=5 Tax=Phytoph... [more]
A0A3M6VLU6_9STRA1.950e-846.30Raptor_N domain-containing protein n=1 Tax=Peronos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103760contigH-elongata_contig103760:1712..1882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue3e-07
Seed eggNOG ortholog65071.PYU1_T005241
Preferred nameRPTOR
KEGG koko:K07204
KEGG Pathwayko04136,ko04138,ko04140,ko04150,ko04151,ko04152,ko04211,ko04213,ko04714,ko04910,ko05206,map04136,map04138,map04140,map04150,map04151,map04152,map04211,map04213,map04714,map04910,map05206
GOsGO:0000003,GO:0000151,GO:0000182,GO:0000323,GO:0001016,GO:0001025,GO:0001030,GO:0001031,GO:0001032,GO:0001067,GO:0001101,GO:0001156,GO:0001558,GO:0001932,GO:0001933,GO:0001934,GO:0001936,GO:0001938,GO:0002165,GO:0002791,GO:0002792,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004525,GO:0004540,GO:0004857,GO:0004860,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005773,GO:0005776,GO:0005829,GO:0006139,GO:0006355,GO:0006359,GO:0006396,GO:0006469,GO:0006725,GO:0006807,GO:0006914,GO:0006950,GO:0007049,GO:0007050,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007399,GO:0007517,GO:0007552,GO:0007562,GO:0007568,GO:0008047,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0008284,GO:0008286,GO:0008340,GO:0008361,GO:0008582,GO:0009056,GO:0009267,GO:0009605,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009791,GO:0009793,GO:0009886,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010073,GO:0010074,GO:0010154,GO:0010243,GO:0010259,GO:0010467,GO:0010468,GO:0010492,GO:0010494,GO:0010506,GO:0010556,GO:0010557,GO:0010562,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010623,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010769,GO:0010770,GO:0010799,GO:0010800,GO:0010817,GO:0010975,GO:0010976,GO:0012501,GO:0014070,GO:0016043,GO:0016070,GO:0016241,GO:0016246,GO:0016441,GO:0016458,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019207,GO:0019209,GO:0019210,GO:0019219,GO:0019220,GO:0019222,GO:0019827,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030154,GO:0030234,GO:0030291,GO:0030295,GO:0030307,GO:0030422,GO:0030674,GO:0031047,GO:0031050,GO:0031053,GO:0031054,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031344,GO:0031346,GO:0031399,GO:0031400,GO:0031401,GO:0031461,GO:0031667,GO:0031668,GO:0031669,GO:0031929,GO:0031931,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032101,GO:0032103,GO:0032147,GO:0032268,GO:0032269,GO:0032270,GO:0032296,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0032880,GO:0032991,GO:0033135,GO:0033138,GO:0033554,GO:0033673,GO:0033674,GO:0034470,GO:0034641,GO:0034660,GO:0035069,GO:0035096,GO:0035194,GO:0035195,GO:0035196,GO:0035556,GO:0035770,GO:0036464,GO:0038201,GO:0038202,GO:0040008,GO:0040012,GO:0040017,GO:0040029,GO:0042127,GO:0042221,GO:0042325,GO:0042326,GO:0042327,GO:0042594,GO:0043085,GO:0043086,GO:0043170,GO:0043200,GO:0043201,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0043434,GO:0043549,GO:0043565,GO:0044087,GO:0044092,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044877,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045786,GO:0045787,GO:0045793,GO:0045859,GO:0045860,GO:0045886,GO:0045893,GO:0045926,GO:0045927,GO:0045931,GO:0045935,GO:0045936,GO:0045937,GO:0045945,GO:0046483,GO:0046676,GO:0046883,GO:0046888,GO:0048316,GO:0048468,GO:0048477,GO:0048507,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048638,GO:0048640,GO:0048699,GO:0048707,GO:0048731,GO:0048856,GO:0048869,GO:0050678,GO:0050679,GO:0050708,GO:0050709,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050796,GO:0050803,GO:0050807,GO:0050896,GO:0050920,GO:0050921,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051093,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051223,GO:0051224,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051270,GO:0051272,GO:0051338,GO:0051347,GO:0051348,GO:0051704,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0051962,GO:0051963,GO:0051964,GO:0060033,GO:0060090,GO:0060255,GO:0060284,GO:0061061,GO:0061458,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070887,GO:0070918,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071359,GO:0071375,GO:0071407,GO:0071417,GO:0071495,GO:0071496,GO:0071684,GO:0071704,GO:0071840,GO:0071889,GO:0071900,GO:0071901,GO:0071902,GO:0080008,GO:0080084,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0090068,GO:0090087,GO:0090276,GO:0090278,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0098727,GO:0098772,GO:0120035,GO:0140098,GO:1900034,GO:1900087,GO:1901360,GO:1901363,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902494,GO:1902531,GO:1902533,GO:1902667,GO:1902669,GO:1902680,GO:1902806,GO:1902808,GO:1903506,GO:1903508,GO:1903530,GO:1903531,GO:1903664,GO:1903666,GO:1904396,GO:1904397,GO:1904950,GO:1905809,GO:1990234,GO:1990837,GO:1990904,GO:2000026,GO:2000045,GO:2000112,GO:2001141
EggNOG free text desc.Regulatory-associated protein of mTOR. Source PGD
EggNOG OGs1MG3W@121069,KOG1517@1,KOG1517@2759
COG Functional cat.D
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-27_000220.1
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.5039964-CDS-H-elongata_contig103760:1711..18821622929572.5039964-CDS-H-elongata_contig103760:1711..1882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103760 1712..1882 -
1691679075.6718225-CDS-H-elongata_contig103760:1711..18821691679075.6718225-CDS-H-elongata_contig103760:1711..1882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103760 1712..1882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103760.317.1prot_H-elongata_contig103760.317.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103760 1712..1882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103760.317.1

>prot_H-elongata_contig103760.317.1 ID=prot_H-elongata_contig103760.317.1|Name=mRNA_H-elongata_contig103760.317.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
QILSSDGEELSRITSYNGFAANRLGSMSCLAFHPNELILAAGDSASIVSL
FAPDDE*
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mRNA from alignment at H-elongata_contig103760:1712..1882-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103760.317.1 ID=mRNA_H-elongata_contig103760.317.1|Name=mRNA_H-elongata_contig103760.317.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig103760:1712..1882- (Himanthalia elongata Himel1 dioecious)
CAGATCTTGTCGTCCGATGGGGAGGAGCTTTCTCGCATCACGAGCTACAA
CGGCTTCGCGGCGAACAGGCTCGGCTCCATGTCATGCCTCGCGTTTCATC
CCAACGAGCTCATTCTCGCGGCGGGCGACAGCGCATCGATCGTTTCCCTC
TTTGCCCCCGATGACGAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig103760:1712..1882-

>mRNA_H-elongata_contig103760.317.1 ID=mRNA_H-elongata_contig103760.317.1|Name=mRNA_H-elongata_contig103760.317.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig103760:1712..1882- (Himanthalia elongata Himel1 dioecious)
CAGATCTTGTCGTCCGATGGGGAGGAGCTTTCTCGCATCACGAGCTACAA
CGGCTTCGCGGCGAACAGGCTCGGCTCCATGTCATGCCTCGCGTTTCATC
CCAACGAGCTCATTCTCGCGGCGGGCGACAGCGCATCGATCGTTTCCCTC
TTTGCCCCCGATGACGAATAGCAGATCTTGTCGTCCGATGGGGAGGAGCT
TTCTCGCATCACGAGCTACAACGGCTTCGCGGCGAACAGGCTCGGCTCCA
TGTCATGCCTCGCGTTTCATCCCAACGAGCTCATTCTCGCGGCGGGCGAC
AGCGCATCGATCGTTTCCCTCTTTGCCCCCGATGACGAATAG
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