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Homology
BLAST of mRNA_H-elongata_contig103752.314.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE) HSP 1 Score: 48.9 bits (115), Expect = 2.400e-5 Identity = 21/37 (56.76%), Postives = 30/37 (81.08%), Query Frame = 1 Query: 34 VPRINWFSNPDVDHLNKPTGQDDANCARAIEDNMVKL 144
VP++N+FSNP+V +LNKPTG A+ AR IE++MV +
Sbjct: 544 VPQVNYFSNPEVTYLNKPTGTATADNARCIEESMVAV 580
BLAST of mRNA_H-elongata_contig103752.314.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE) HSP 1 Score: 48.1 bits (113), Expect = 4.500e-5 Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1 Query: 34 VPRINWFSNPDVDHLNKPTGQDDANCARAIEDNMVKL 144
VPR+N+FSNP+V +LNK TG A+ AR IED+MV +
Sbjct: 364 VPRVNYFSNPNVTYLNKSTGTAAADNARCIEDSMVAV 400
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103752.314.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | no signal peptide or anchor |
| Exons | 1 |
| Model size | 144 |
| Cds size | 132 |
| Stop | 0 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929572.3185782-CDS-H-elongata_contig103752:296..428 | 1622929572.3185782-CDS-H-elongata_contig103752:296..428 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig103752 297..428 - |
| 1691679075.612705-CDS-H-elongata_contig103752:296..428 | 1691679075.612705-CDS-H-elongata_contig103752:296..428 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig103752 297..428 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929572.3338978-UTR-H-elongata_contig103752:428..440 | 1622929572.3338978-UTR-H-elongata_contig103752:428..440 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig103752 429..440 - |
| 1691679075.6194947-UTR-H-elongata_contig103752:428..440 | 1691679075.6194947-UTR-H-elongata_contig103752:428..440 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig103752 429..440 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103752.314.1 >prot_H-elongata_contig103752.314.1 ID=prot_H-elongata_contig103752.314.1|Name=mRNA_H-elongata_contig103752.314.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MAHTCNNVPRINWFSNPDVDHLNKPTGQDDANCARAIEDNMVKL back to topmRNA from alignment at H-elongata_contig103752:297..440- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig103752.314.1 ID=mRNA_H-elongata_contig103752.314.1|Name=mRNA_H-elongata_contig103752.314.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig103752:297..440- (Himanthalia elongata Himel1 dioecious)
TACCACACTATCATGGCGCATACGTGCAATAATGTGCCCCGCATCAACTG
GTTCTCCAACCCTGACGTCGACCACTTGAATAAACCTACTGGCCAAGATG
ATGCGAACTGCGCCCGTGCTATTGAAGATAACATGGTAAAGTTA back to topCoding sequence (CDS) from alignment at H-elongata_contig103752:297..440- >mRNA_H-elongata_contig103752.314.1 ID=mRNA_H-elongata_contig103752.314.1|Name=mRNA_H-elongata_contig103752.314.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig103752:297..440- (Himanthalia elongata Himel1 dioecious)
ATGGCGCATACGTGCAATAATGTGCCCCGCATCAACTGGTTCTCCAACCC
TGACGTCGACCACTTGAATAAACCTACTGGCCAAGATGATGCGAACTGCG
CCCGTGCTATTGAAGATAACATGGTAAAGTTAATGGCGCATACGTGCAAT
AATGTGCCCCGCATCAACTGGTTCTCCAACCCTGACGTCGACCACTTGAA
TAAACCTACTGGCCAAGATGATGCGAACTGCGCCCGTGCTATTGAAGATA
ACATGGTAAAGTTA back to top
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