mRNA_H-elongata_contig103738.313.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig103738.313.1 vs. uniprot
Match: D7FRY4_ECTSI (ThiC-associated domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRY4_ECTSI) HSP 1 Score: 323 bits (827), Expect = 6.940e-105 Identity = 153/182 (84.07%), Postives = 167/182 (91.76%), Query Frame = 1 Query: 4 RMVASPPRLD----FPGQIKAGDGRVKRTADPFNPDFHEVASFGDAYPESTKDYKEVAHATTGHRMRVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRAEWIKRREESGDEVFTQMYYAKKGVITEEMAYVAAREGMDPEFVRSEVERGRAIIPSNKRHVELEPMIIGRLFKVR 537 +MVASPP+++ PG K G GRVKRT DP+NPDFHEVASFGDAYPESTK Y+E+ HA TGH+M+VPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVR EW+KRRE+SGDEVFTQM+YAKKG+ITEEMAY AAREGMDPEFVRSEVERGRAIIPSNKRHVELEPMIIGRLFKV+ Sbjct: 43 QMVASPPKVEPVEVAPGFNKPGSGRVKRTTDPYNPDFHEVASFGDAYPESTKRYQEIVHAETGHKMKVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRGEWVKRREDSGDEVFTQMHYAKKGIITEEMAYCAAREGMDPEFVRSEVERGRAIIPSNKRHVELEPMIIGRLFKVK 224
BLAST of mRNA_H-elongata_contig103738.313.1 vs. uniprot
Match: A0A835Z789_9STRA (ThiC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z789_9STRA) HSP 1 Score: 259 bits (663), Expect = 1.970e-80 Identity = 123/177 (69.49%), Postives = 142/177 (80.23%), Query Frame = 1 Query: 7 MVASPPRLDFPGQIKAGDGRVKRTADPFNPDFHEVASFGDAYPESTKDYKEVAHATTGHRMRVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRAEWIKRREESGDEVFTQMYYAKKGVITEEMAYVAAREGMDPEFVRSEVERGRAIIPSNKRHVELEPMIIGRLFKVR 537 MV +PP ++ G GRVK T DP+NP F A FG AYP STK+Y+EV H TG +RVPFRRIHL+DPDPGCSH+DVYDT+GPLG DP+ GLP +R W+KRREE GDE FTQM+YAK+G+ITEEMAYVAAREGMD EFVRSEV RGRAIIPSN+ H ELEPMIIGR+FKV+ Sbjct: 51 MVMTPPEKI----VEPGSGRVKPTKDPYNPQFRSAADFGVAYPSSTKEYQEVIHEETGTLLRVPFRRIHLTDPDPGCSHIDVYDTSGPLGYDPKYGLPKLREAWVKRREERGDERFTQMHYAKRGIITEEMAYVAAREGMDAEFVRSEVARGRAIIPSNRYHTELEPMIIGRMFKVK 223
BLAST of mRNA_H-elongata_contig103738.313.1 vs. uniprot
Match: A0A6T5LU33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5LU33_HETAK) HSP 1 Score: 253 bits (647), Expect = 3.210e-78 Identity = 117/154 (75.97%), Postives = 132/154 (85.71%), Query Frame = 1 Query: 76 TADPFNPDFHEVASFGDAYPESTKDYKEVAHATTGHRMRVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRAEWIKRREESGDEVFTQMYYAKKGVITEEMAYVAAREGMDPEFVRSEVERGRAIIPSNKRHVELEPMIIGRLFKVR 537 T DPFNP+F E SFG+AYP STK+YKEV H TG +RVPFRRIHL+D DPGC HLDVYDT+GP G PR+G+P +R EWIKRREE GDE +TQMYYAKKG++TEEMAYVAAREGMDPEFVRSEV RGRAII SNKRH+ELEP IIGR+FKV+ Sbjct: 60 TKDPFNPEFRETTSFGEAYPSSTKEYKEVVHEETGALLRVPFRRIHLTDEDPGCGHLDVYDTSGPQGFSPREGIPKLREEWIKRREERGDERYTQMYYAKKGIVTEEMAYVAAREGMDPEFVRSEVARGRAIICSNKRHLELEPQIIGRMFKVK 213
BLAST of mRNA_H-elongata_contig103738.313.1 vs. uniprot
Match: A0A4D9D219_9STRA (ThiC-associated domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D219_9STRA) HSP 1 Score: 233 bits (595), Expect = 1.050e-70 Identity = 108/162 (66.67%), Postives = 129/162 (79.63%), Query Frame = 1 Query: 52 AGDGRVKRTADPFNPDFHEVASFGDAYPESTKDYKEVAHATTGHRMRVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRAEWIKRREESGDEVFTQMYYAKKGVITEEMAYVAAREGMDPEFVRSEVERGRAIIPSNKRHVELEPMIIGRLFKVR 537 AG GR K T DP+NPDF +F +AYP+ TK+Y V H TG M VPFRRIHL+D DPGC HLD+YDT+GP G +PR+GLP +R W+ RRE+ GD TQM+YAK+G++TEEMAYVAAREGMDP+FV SEV RGRAIIPSNKRH+ELEPMI+GR FKV+ Sbjct: 32 AGSGRSKPTKDPYNPDFIRPLTFEEAYPKCTKEYIPVTHEGTGEVMSVPFRRIHLADTDPGCEHLDLYDTSGPQGVNPREGLPKLRKSWVGRREQKGDATPTQMWYAKQGIVTEEMAYVAAREGMDPQFVLSEVARGRAIIPSNKRHLELEPMIVGRNFKVK 193
BLAST of mRNA_H-elongata_contig103738.313.1 vs. uniprot
Match: A0A1Q9EQ11_SYMMI (Phosphomethylpyrimidine synthase, chloroplastic n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EQ11_SYMMI) HSP 1 Score: 225 bits (574), Expect = 2.330e-67 Identity = 103/163 (63.19%), Postives = 130/163 (79.75%), Query Frame = 1 Query: 49 KAGDGRVKRTADPFNPDFHEVASFGDAYPESTKDYKEVAHATTGHRMRVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRAEWIKRREESGDEVFTQMYYAKKGVITEEMAYVAAREGMDPEFVRSEVERGRAIIPSNKRHVELEPMIIGRLFKVR 537 ++ GR + T+DP+NP+F + F +AYP S K YKEV + TG ++++PFRRIHL+D DPGC HLDVYDT+GP GADPRKGL +R +WI+ RE + D TQMYYAK+GVIT+EMA++AAREGMDPEFVRSE+ RGRAIIP+N+ H E EPMIIGR FKV+ Sbjct: 61 RSRSGRSRPTSDPYNPEFKDAFQFKEAYPSSEKIYKEVVYEATGEKLKIPFRRIHLTDEDPGCDHLDVYDTSGPPGADPRKGLAKLRKKWIEGREVAEDGTCTQMYYAKQGVITQEMAFIAAREGMDPEFVRSELARGRAIIPANRNHPESEPMIIGRHFKVK 223
BLAST of mRNA_H-elongata_contig103738.313.1 vs. uniprot
Match: A0A7S2QJG1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QJG1_9DINO) HSP 1 Score: 209 bits (531), Expect = 3.390e-66 Identity = 99/152 (65.13%), Postives = 122/152 (80.26%), Query Frame = 1 Query: 88 FNPDFHEVASFGDAYPESTKDYKEVAHATTGHRMRVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRAEWIKRREESGDE--VFTQMYYAKKGVITEEMAYVAAREGMDPEFVRSEVERGRAIIPSNKRHVELEPMIIGRLFKVR 537 +NP F ++ F +AYP S K YK V + TG +R+P RRI+LSD DPGC HLDVYDT+GPL DPR+GLP +RA+WI RE++ E V TQM+YAK+G+ITEEMA++AAREGMDPEFVRSEV RGRAIIPSN++H E+EPMIIGR FKV+ Sbjct: 1 YNPQFKDMLQFKEAYPGSEKIYKGVTYEPTGETLRIPCRRINLSDEDPGCDHLDVYDTSGPLNIDPRQGLPKLRAQWIAAREKTFGEGHVCTQMHYAKQGIITEEMAFIAAREGMDPEFVRSEVARGRAIIPSNRKHPEIEPMIIGRKFKVK 152
BLAST of mRNA_H-elongata_contig103738.313.1 vs. uniprot
Match: A0A7S4VML7_9DINO (Hypothetical protein n=3 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4VML7_9DINO) HSP 1 Score: 223 bits (567), Expect = 4.820e-66 Identity = 105/163 (64.42%), Postives = 126/163 (77.30%), Query Frame = 1 Query: 55 GDGRVKRTADPFNPDFHEVASFGDAYPESTKDYKEVAHATTGHRMRVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRAEWIKRRE--ESGDEVFTQMYYAKKGVITEEMAYVAAREGMDPEFVRSEVERGRAIIPSNKRHVELEPMIIGRLFKVR 537 G GR K T+DP+NP F +V F +AYP S K Y+EV H TG ++VPFRRIHLSD DPGC HLDVYDT+GPLG PR+GLP +R W+ RE + TQM+YAK+G++TEEMA+VAAREGMDPEFVR+EV RGRAIIPSN++H E EPMIIGR FKV+ Sbjct: 101 GAGRTKPTSDPYNPQFRDVLQFQEAYPNSEKLYREVTHTPTGETLQVPFRRIHLSDEDPGCGHLDVYDTSGPLGVIPREGLPKLRKAWVAAREAADGPGARCTQMHYAKRGIVTEEMAFVAAREGMDPEFVRAEVARGRAIIPSNRKHPESEPMIIGRKFKVK 263
BLAST of mRNA_H-elongata_contig103738.313.1 vs. uniprot
Match: A0A7S2VR37_9DINO (Hypothetical protein n=2 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VR37_9DINO) HSP 1 Score: 218 bits (556), Expect = 1.310e-64 Identity = 104/160 (65.00%), Postives = 125/160 (78.12%), Query Frame = 1 Query: 64 RVKRTADPFNPDFHEVASFGDAYPESTKDYKEVAHATTGHRMRVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRAEWIKRREESGDEVF--TQMYYAKKGVITEEMAYVAAREGMDPEFVRSEVERGRAIIPSNKRHVELEPMIIGRLFKVR 537 R K T+DP+NP F ++ F +AYP S K YK+V + TG +R+PFRRIHLSD DPGC HLDVYDT+GPL DPR+GLP +RA WI RE E TQM+YAK+GV+T+EMA++AAREGMDPEFVRSEV RGRAIIPSN++H E EPMIIGR FKV+ Sbjct: 79 RSKPTSDPYNPQFKDMLQFKEAYPGSEKLYKDVTYEPTGETLRIPFRRIHLSDEDPGCGHLDVYDTSGPLNVDPRQGLPKLRAPWIAAREAEFGEGHRCTQMHYAKQGVVTQEMAFIAAREGMDPEFVRSEVARGRAIIPSNRKHPESEPMIIGRKFKVK 238
BLAST of mRNA_H-elongata_contig103738.313.1 vs. uniprot
Match: A0A7S3TGH3_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TGH3_9SPIT) HSP 1 Score: 213 bits (543), Expect = 1.200e-62 Identity = 101/167 (60.48%), Postives = 126/167 (75.45%), Query Frame = 1 Query: 43 QIKAGDGRVKRTADPFNPDFHEVASFGDAYPESTKDYKEVAHATTGHRMRVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRAEWIKRRE--ESGDEVFTQMYYAKKGVITEEMAYVAAREGMDPEFVRSEVERGRAIIPSNKRHVELEPMIIGRLFKVR 537 Q G R + T+DP+NP F ++ +F +A+P+S K YKEV H TG +RVP RRIHL D D GC HLDVYDT+GPL DPR+G P +RA+WI+ RE + + TQMYYAK+G+ITEEM+++AAREGMDPEFVRSEV RGR IIP+N+ H E EPMIIGR FKV+ Sbjct: 79 QQPEGPERSRPTSDPYNPQFKDMVNFQEAFPKSEKFYKEVVHEPTGEVLRVPCRRIHLDDEDEGCGHLDVYDTSGPLNIDPREGQPKLRAKWIEAREARDGAGQRCTQMYYAKRGIITEEMSFIAAREGMDPEFVRSEVARGRGIIPANRNHPESEPMIIGRKFKVK 245
BLAST of mRNA_H-elongata_contig103738.313.1 vs. uniprot
Match: A0A7S0ZI78_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZI78_9RHOD) HSP 1 Score: 212 bits (540), Expect = 1.640e-62 Identity = 102/162 (62.96%), Postives = 124/162 (76.54%), Query Frame = 1 Query: 52 AGDGRVKRTADPFNPDFHEVASFGDAYPESTKDYKEVAHATTGHRMRVPFRRIHLSDPDPGCSHLDVYDTAGPLGADPRKGLPSVRAEWIKRREESGDEVFTQMYYAKKGVITEEMAYVAAREGMDPEFVRSEVERGRAIIPSNKRHVELEPMIIGRLFKVR 537 A + + TADP+NP+F + +F YP STK+Y V H TG ++ +P RR+HLS+ G S +D+YDT+GP G DPR+GLP VR EWIKRRE GD+ FTQM+YA+K +ITEEM YVA REG+DPEFVRSEV RGRAIIPSNKRH ELEPMIIGR FKV+ Sbjct: 54 ASKKKSRPTADPYNPEFLQKPTFESCYPNSTKEYTPVVHEPTGEKLWIPNRRVHLSE---GESPVDLYDTSGPQGIDPREGLPKVRKEWIKRREARGDKTFTQMHYARKNMITEEMLYVAVREGLDPEFVRSEVARGRAIIPSNKRHTELEPMIIGRNFKVK 212 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103738.313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103738.313.1 >prot_H-elongata_contig103738.313.1 ID=prot_H-elongata_contig103738.313.1|Name=mRNA_H-elongata_contig103738.313.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp MVASPPRLDFPGQIKAGDGRVKRTADPFNPDFHEVASFGDAYPESTKDYKback to top mRNA from alignment at H-elongata_contig103738:421..1316- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103738.313.1 ID=mRNA_H-elongata_contig103738.313.1|Name=mRNA_H-elongata_contig103738.313.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=896bp|location=Sequence derived from alignment at H-elongata_contig103738:421..1316- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103738:421..1316- >mRNA_H-elongata_contig103738.313.1 ID=mRNA_H-elongata_contig103738.313.1|Name=mRNA_H-elongata_contig103738.313.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig103738:421..1316- (Himanthalia elongata Himel1 dioecious)back to top |