mRNA_H-elongata_contig103732.312.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103732.312.1
Unique NamemRNA_H-elongata_contig103732.312.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.080e-22
Identity = 58/137 (42.34%), Postives = 78/137 (56.93%), Query Frame = 1 
Query:   22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
            CD I +QETRR+ + +I     GYV+  SG   G   KRG+ GVG A++E    ++G +G   E IS RL+KV +        TF+VGYAPTE   T        K  FW  L + + EV + DHL+++ DANARTG
Sbjct:   12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 146
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BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5K6P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P8_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.920e-22
Identity = 58/137 (42.34%), Postives = 79/137 (57.66%), Query Frame = 1 
Query:   22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
            CD + +QE RRD + +I  P  GYV+  SG   G   KRG+ GVG+A++E    ++G +G   E IS RL+KV +        TF+VGYAPTE   T        K  FW  L + + EV + DHL+++ DANARTG
Sbjct:   59 CDVVGLQENRRDGQGSI--PHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLLVLMDANARTG 193
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BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.490e-22
Identity = 58/137 (42.34%), Postives = 79/137 (57.66%), Query Frame = 1 
Query:   22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
            CD I +QETRR+ + +I     GYV+  SG   G   KRG+ GVG+A++E    ++G +G   E IS RL+KV +        TF+VGYAPTE   T        K  FW  L + + EV + DHL+++ DANARTG
Sbjct:   12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 146
[Close]
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.010e-22
Identity = 58/141 (41.13%), Postives = 78/141 (55.32%), Query Frame = 1 
Query:   10 AKYECDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
            A  +CD I +QETRR  +  I     GYV+  SG   G   KRG+ GVG+A++E    ++G  G   E IS RL+KV +        TF+VGYAPTE +          K  FW  L + + EV + DHL+++ DANARTG
Sbjct:    8 AATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTG 146
[Close]
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.120e-21
Identity = 58/137 (42.34%), Postives = 79/137 (57.66%), Query Frame = 1 
Query:   22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
            CD I +QETRR+ + +I     GYV+  SG   G   KRG+ GVG+A++E    ++G +G   E IS RL+KV +        TF+VGYAPTE   T        K  FW  L + + EV + DHL+++ DANARTG
Sbjct:   12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 146
[Close]
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.700e-21
Identity = 58/137 (42.34%), Postives = 79/137 (57.66%), Query Frame = 1 
Query:   22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
            CD I +QETRR+ + +I     GYV   SG   G  GK G+ GVG+A++E   +++G +G   E IS RL+KV +        TF+VGYAPTE   T        K  FW  L + + EV + DHL+++ DANARTG
Sbjct:   12 CDVIGLQETRREGQGSIAHD--GYVFIWSGARAGTKGKWGVHGVGIAIKEAMWQSVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 146
[Close]
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5L315_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L315_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.890e-21
Identity = 59/137 (43.07%), Postives = 78/137 (56.93%), Query Frame = 1 
Query:   22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
            CD I +QETRR+E+    A   GYV+  SG   G   KRG+ GVG+A++E    ++G DG   E IS RL+KV +        TF+VGYAPTE   T        K  FW  L + + EV +  HL+++ DANARTG
Sbjct:   38 CDVIGLQETRREEQGGSIAHD-GYVIIWSGARAGTKDKRGVRGVGIAIKEAMWESVGEDGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRHHLVVLMDANARTG 173
[Close]
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.640e-21
Identity = 58/137 (42.34%), Postives = 78/137 (56.93%), Query Frame = 1 
Query:   22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
            CD I +QETRR  + +I     GYV+  SG   G   KRG+ GVG+A++E    ++G +G   E IS RL+KV +        TF+VGYAPTE   T        K  FW  L + + EV + DHL+++ DANARTG
Sbjct:  209 CDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 343
[Close]
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5JUT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT2_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.830e-21
Identity = 57/137 (41.61%), Postives = 78/137 (56.93%), Query Frame = 1 
Query:   22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
            CD I +QETRR+ + +I     GYV+  SG   G   KRG+ GVG+A++E    ++G +G   E IS RL+K  +        TF+VGYAPTE   T        K  FW  L + + EV + DHL+++ DANARTG
Sbjct:   12 CDVIELQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKARLQIGRTCRVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVYSRDHLVVLMDANARTG 146
[Close]
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.710e-21
Identity = 58/137 (42.34%), Postives = 78/137 (56.93%), Query Frame = 1 
Query:   22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
            CD I +QETRR  + +I     GYV+  SG   G   KRG+ GVG+A++E    ++G +G   E IS RL+KV +        TF+VGYAPTE   T        K  FW  L + + EV + DHL+++ DANARTG
Sbjct:  120 CDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 254
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMM5_9PHAE1.080e-2242.34Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K6P8_9PHAE1.920e-2242.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBZ6_9PHAE2.490e-2242.34Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KP87_9PHAE9.010e-2241.13Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5L7A7_9PHAE1.120e-2142.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ63_9PHAE1.700e-2142.34Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L315_9PHAE1.890e-2143.07Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K3Q1_9PHAE2.640e-2142.34Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JUT2_9PHAE2.830e-2141.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMB4_9PHAE3.710e-2142.34Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103732contigH-elongata_contig103732:90..503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score69.7
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog6500.XP_005107471.1
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs39VM0@33154,3BKMM@33208,3D1CS@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size414
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.1938663-CDS-H-elongata_contig103732:89..5031622929572.1938663-CDS-H-elongata_contig103732:89..503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103732 90..503 -
1691679075.5718062-CDS-H-elongata_contig103732:89..5031691679075.5718062-CDS-H-elongata_contig103732:89..503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103732 90..503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103732.312.1prot_H-elongata_contig103732.312.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103732 90..503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103732.312.1

>prot_H-elongata_contig103732.312.1 ID=prot_H-elongata_contig103732.312.1|Name=mRNA_H-elongata_contig103732.312.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
MFAAKYECDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILG
VGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTE
ASATCHKSKFWKELCSTVAEVPASDHLILMTDANARTG
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mRNA from alignment at H-elongata_contig103732:90..503-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103732.312.1 ID=mRNA_H-elongata_contig103732.312.1|Name=mRNA_H-elongata_contig103732.312.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=414bp|location=Sequence derived from alignment at H-elongata_contig103732:90..503- (Himanthalia elongata Himel1 dioecious)
ATGTTCGCTGCGAAGTACGAGTGCGACTTCATTGCCATACAGGAGACTCG
CCGCGATGAAAGGACAACCATCCAAGCACCAGCCGCTGGTTATGTCGTGC
ACTGTAGCGGTCATTGCGATGGTGATGGAGGTAAGCGCGGAATACTCGGA
GTCGGTCTGGCTGTCAGGGAGCCTTTCGCTCGCGCACTCGGCCCAGATGG
CATTGTGCCGGAACACATCAGTGCGCGGCTGCTGAAGGTGGGGGTGATTT
TCAAACACAGAGCCGTCACAACCTTCATCGTGGGATACGCTCCGACTGAA
GCATCAGCCACCTGTCACAAGTCTAAGTTCTGGAAGGAACTTTGCAGCAC
TGTCGCTGAGGTACCTGCCAGCGACCACCTGATTTTGATGACGGATGCTA
ACGCCCGTACGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig103732:90..503-

>mRNA_H-elongata_contig103732.312.1 ID=mRNA_H-elongata_contig103732.312.1|Name=mRNA_H-elongata_contig103732.312.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig103732:90..503- (Himanthalia elongata Himel1 dioecious)
ATGTTCGCTGCGAAGTACGAGTGCGACTTCATTGCCATACAGGAGACTCG
CCGCGATGAAAGGACAACCATCCAAGCACCAGCCGCTGGTTATGTCGTGC
ACTGTAGCGGTCATTGCGATGGTGATGGAGGTAAGCGCGGAATACTCGGA
GTCGGTCTGGCTGTCAGGGAGCCTTTCGCTCGCGCACTCGGCCCAGATGG
CATTGTGCCGGAACACATCAGTGCGCGGCTGCTGAAGGTGGGGGTGATTT
TCAAACACAGAGCCGTCACAACCTTCATCGTGGGATACGCTCCGACTGAA
GCATCAGCCACCTGTCACAAGTCTAAGTTCTGGAAGGAACTTTGCAGCAC
TGTCGCTGAGGTACCTGCCAGCGACCACCTGATTTTGATGACGGATGCTA
ACGCCCGTACGGGAATGTTCGCTGCGAAGTACGAGTGCGACTTCATTGCC
ATACAGGAGACTCGCCGCGATGAAAGGACAACCATCCAAGCACCAGCCGC
TGGTTATGTCGTGCACTGTAGCGGTCATTGCGATGGTGATGGAGGTAAGC
GCGGAATACTCGGAGTCGGTCTGGCTGTCAGGGAGCCTTTCGCTCGCGCA
CTCGGCCCAGATGGCATTGTGCCGGAACACATCAGTGCGCGGCTGCTGAA
GGTGGGGGTGATTTTCAAACACAGAGCCGTCACAACCTTCATCGTGGGAT
ACGCTCCGACTGAAGCATCAGCCACCTGTCACAAGTCTAAGTTCTGGAAG
GAACTTTGCAGCACTGTCGCTGAGGTACCTGCCAGCGACCACCTGATTTT
GATGACGGATGCTAACGCCCGTACGGGA
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