mRNA_H-elongata_contig103732.312.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 1.080e-22 Identity = 58/137 (42.34%), Postives = 78/137 (56.93%), Query Frame = 1 Query: 22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
CD I +QETRR+ + +I GYV+ SG G KRG+ GVG A++E ++G +G E IS RL+KV + TF+VGYAPTE T K FW L + + EV + DHL+++ DANARTG
Sbjct: 12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 146
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5K6P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P8_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.920e-22 Identity = 58/137 (42.34%), Postives = 79/137 (57.66%), Query Frame = 1 Query: 22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
CD + +QE RRD + +I P GYV+ SG G KRG+ GVG+A++E ++G +G E IS RL+KV + TF+VGYAPTE T K FW L + + EV + DHL+++ DANARTG
Sbjct: 59 CDVVGLQENRRDGQGSI--PHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLLVLMDANARTG 193
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 2.490e-22 Identity = 58/137 (42.34%), Postives = 79/137 (57.66%), Query Frame = 1 Query: 22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
CD I +QETRR+ + +I GYV+ SG G KRG+ GVG+A++E ++G +G E IS RL+KV + TF+VGYAPTE T K FW L + + EV + DHL+++ DANARTG
Sbjct: 12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 146
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 9.010e-22 Identity = 58/141 (41.13%), Postives = 78/141 (55.32%), Query Frame = 1 Query: 10 AKYECDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
A +CD I +QETRR + I GYV+ SG G KRG+ GVG+A++E ++G G E IS RL+KV + TF+VGYAPTE + K FW L + + EV + DHL+++ DANARTG
Sbjct: 8 AATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTG 146
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 1.120e-21 Identity = 58/137 (42.34%), Postives = 79/137 (57.66%), Query Frame = 1 Query: 22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
CD I +QETRR+ + +I GYV+ SG G KRG+ GVG+A++E ++G +G E IS RL+KV + TF+VGYAPTE T K FW L + + EV + DHL+++ DANARTG
Sbjct: 12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 146
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 1.700e-21 Identity = 58/137 (42.34%), Postives = 79/137 (57.66%), Query Frame = 1 Query: 22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
CD I +QETRR+ + +I GYV SG G GK G+ GVG+A++E +++G +G E IS RL+KV + TF+VGYAPTE T K FW L + + EV + DHL+++ DANARTG
Sbjct: 12 CDVIGLQETRREGQGSIAHD--GYVFIWSGARAGTKGKWGVHGVGIAIKEAMWQSVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 146
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5L315_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L315_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 1.890e-21 Identity = 59/137 (43.07%), Postives = 78/137 (56.93%), Query Frame = 1 Query: 22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
CD I +QETRR+E+ A GYV+ SG G KRG+ GVG+A++E ++G DG E IS RL+KV + TF+VGYAPTE T K FW L + + EV + HL+++ DANARTG
Sbjct: 38 CDVIGLQETRREEQGGSIAHD-GYVIIWSGARAGTKDKRGVRGVGIAIKEAMWESVGEDGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRHHLVVLMDANARTG 173
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 2.640e-21 Identity = 58/137 (42.34%), Postives = 78/137 (56.93%), Query Frame = 1 Query: 22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
CD I +QETRR + +I GYV+ SG G KRG+ GVG+A++E ++G +G E IS RL+KV + TF+VGYAPTE T K FW L + + EV + DHL+++ DANARTG
Sbjct: 209 CDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 343
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5JUT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT2_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 2.830e-21 Identity = 57/137 (41.61%), Postives = 78/137 (56.93%), Query Frame = 1 Query: 22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
CD I +QETRR+ + +I GYV+ SG G KRG+ GVG+A++E ++G +G E IS RL+K + TF+VGYAPTE T K FW L + + EV + DHL+++ DANARTG
Sbjct: 12 CDVIELQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKARLQIGRTCRVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVYSRDHLVVLMDANARTG 146
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 3.710e-21 Identity = 58/137 (42.34%), Postives = 78/137 (56.93%), Query Frame = 1 Query: 22 CDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGVGLAVREPFARALGPDGIVPEHISARLLKVGVIFKHRAVTTFIVGYAPTEASATCH------KSKFWKELCSTVAEVPASDHLILMTDANARTG 414
CD I +QETRR + +I GYV+ SG G KRG+ GVG+A++E ++G +G E IS RL+KV + TF+VGYAPTE T K FW L + + EV + DHL+++ DANARTG
Sbjct: 120 CDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 254 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103732.312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103732.312.1 >prot_H-elongata_contig103732.312.1 ID=prot_H-elongata_contig103732.312.1|Name=mRNA_H-elongata_contig103732.312.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp MFAAKYECDFIAIQETRRDERTTIQAPAAGYVVHCSGHCDGDGGKRGILGback to top mRNA from alignment at H-elongata_contig103732:90..503- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103732.312.1 ID=mRNA_H-elongata_contig103732.312.1|Name=mRNA_H-elongata_contig103732.312.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=414bp|location=Sequence derived from alignment at H-elongata_contig103732:90..503- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103732:90..503- >mRNA_H-elongata_contig103732.312.1 ID=mRNA_H-elongata_contig103732.312.1|Name=mRNA_H-elongata_contig103732.312.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig103732:90..503- (Himanthalia elongata Himel1 dioecious)back to top |