mRNA_H-elongata_contig10372.311.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig10372.311.1 vs. uniprot
Match: A0A6H5L3R0_9PHAE (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3R0_9PHAE) HSP 1 Score: 357 bits (916), Expect = 1.290e-116 Identity = 160/219 (73.06%), Postives = 190/219 (86.76%), Query Frame = 3 Query: 672 VSGALLPATGADEPPREATANYYEWRDVFPELEILVNGMADIVAECEQVAAWKAWPEKHYDEGGKLDWKVYPFMHTFPAHDESRRTWVESTCVRCPATTKLLRRLPNIRTALFSRLGGGSRIAGHQGWADLANHVLRCHLPLRVPSSGTCGLWVDGEIRQHTEGEIIVFDDSKLHKAFNDSTEDRLVLIVDMRRPSWIPLGIADGEHTAELDAFIDAFR 1328 +S L+ A E P++ T NYY+W+ +FPEL++LV+G+++I AEC QVAAWKAWPEKHYDEGG DWKV+PF+HTFPA+DE+RRTW++STC RCPAT +LRRLPNIRTALFSRLGGGSRI+GH+GWADLANHVLRCHLPL+VPS G CGLWV+ E+R H EGEIIVFDDSKLHKAFN+S+ +RLVLIVD+ RP +PLG ADGEHT ELDAFIDAFR Sbjct: 93 LSEELVVIGAAGEVPQDDTPNYYDWQYLFPELKVLVDGLSEIAAECAQVAAWKAWPEKHYDEGGGQDWKVFPFVHTFPAYDEARRTWIDSTCGRCPATAAILRRLPNIRTALFSRLGGGSRISGHRGWADLANHVLRCHLPLKVPSDGPCGLWVNEEVRHHVEGEIIVFDDSKLHKAFNESSGERLVLIVDILRPPGVPLGTADGEHTPELDAFIDAFR 311
BLAST of mRNA_H-elongata_contig10372.311.1 vs. uniprot
Match: D7FJE5_ECTSI (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE5_ECTSI) HSP 1 Score: 267 bits (682), Expect = 8.030e-84 Identity = 120/151 (79.47%), Postives = 138/151 (91.39%), Query Frame = 3 Query: 876 KVYPFMHTFPAHDESRRTWVESTCVRCPATTKLLRRLPNIRTALFSRLGGGSRIAGHQGWADLANHVLRCHLPLRVPSSGTCGLWVDGEIRQHTEGEIIVFDDSKLHKAFNDSTEDRLVLIVDMRRPSWIPLGIADGEHTAELDAFIDAFR 1328 +V+PF+HTFPA+DE+RRTW++STC RCPAT +LRRLPNIRTALFSRLGGGSRI+GH+GWADLANHVLRCHLPL+VPS G CGLWV+ E+R H EGEIIVFDDSKLHKAFN+S+E+RLVLIVD+ RP +PLG ADGEHT ELDAFIDAFR Sbjct: 5 RVFPFVHTFPAYDEARRTWIDSTCGRCPATAAILRRLPNIRTALFSRLGGGSRISGHRGWADLANHVLRCHLPLKVPSDGPCGLWVNEEVRHHVEGEIIVFDDSKLHKAFNESSEERLVLIVDILRPPGVPLGTADGEHTPELDAFIDAFR 155
BLAST of mRNA_H-elongata_contig10372.311.1 vs. uniprot
Match: A0A6V1W3Q8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1W3Q8_HETAK) HSP 1 Score: 267 bits (682), Expect = 2.270e-82 Identity = 118/197 (59.90%), Postives = 147/197 (74.62%), Query Frame = 3 Query: 735 YYEWRDVFPELEILVNGMADIVAECEQVAAWKAWPEKHYDEGGKLDWKVYPFMHTFPAHDESRRTWVESTCVRCPATTKLLRRLPNIRTALFSRLGGGSRIAGHQGWADLANHVLRCHLPLRVPSSGTCGLWVDGEIRQHTEGEIIVFDDSKLHKAFNDSTEDRLVLIVDMRRPSWIPLGIADGEHTAELDAFIDAF 1325 YY+WR+++P+L++L++ DI+ E E V W AWPE H+ EGG DWKV+PF + FPA DESR WVE TC CP T ++L+++P +RTALFSRLG G+R++ H GW DLANHVLR HL LRVP G CGLWV+G++ H +I VFDDSK HKAFNDS E+RLVLIVD+ RP +P G A G HTAELD FI AF Sbjct: 57 YYDWRELYPQLQVLIDNYEDILQEAEAVTGWHAWPEYHFREGGNNDWKVFPFAYCFPADDESRLAWVEKTCSYCPKTVEVLKQIPGLRTALFSRLGPGTRLSTHTGWEDLANHVLRAHLGLRVPPGGRCGLWVEGKVELHEARQINVFDDSKRHKAFNDSAEERLVLIVDLARPEGVPRGRAVGGHTAELDRFIGAF 253
BLAST of mRNA_H-elongata_contig10372.311.1 vs. uniprot
Match: A0A7S2UZL3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZL3_9STRA) HSP 1 Score: 256 bits (655), Expect = 4.720e-78 Identity = 116/200 (58.00%), Postives = 150/200 (75.00%), Query Frame = 3 Query: 735 YYEWRDVFPELEILVNGMADIVAECEQVAAWKAWPEKHYDEGGKLDWKVYPFMHTFPAHDESRRTWVESTCVRCPATTKLLRRLPNIRTALFSRLGGGSRIAGHQGWADLANHVLRCHLPLRVPSSG-TCGLWVDGEIRQHTEGEIIVFDDSKLHKAFNDSTEDRLVLIVDMRRPSWIPLGIADGEHTAELDAFID-AFR 1328 +Y+WR +PEL++L++ I+ E + + WKAWPE H++EGG DWKV+PF+HTFPA WV TC +CP T LLR+LPN+RTALFSRLG G++++ H+GWADLAN VLRCHL L++P +CG+WV+G+I+ H + EIIVFDDSKLHKAFN S+ +RLVLI DM RP+ IP G A G HT ELD FI+ AFR Sbjct: 76 FYDWRQYYPELQLLIDNFDQILEEAQSLIGWKAWPEYHFEEGGGDDWKVFPFLHTFPATSPENAVWVGPTCRKCPKTVSLLRQLPNLRTALFSRLGSGTKLSTHRGWADLANFVLRCHLSLKIPDPPESCGVWVEGQIQHHRDKEIIVFDDSKLHKAFNTSSGERLVLIFDMIRPNDIPQGRAKGPHTPELDNFIEKAFR 275
BLAST of mRNA_H-elongata_contig10372.311.1 vs. uniprot
Match: A0A7S2SV16_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV16_9STRA) HSP 1 Score: 257 bits (657), Expect = 3.100e-76 Identity = 116/217 (53.46%), Postives = 156/217 (71.89%), Query Frame = 3 Query: 681 ALLPATGADEPPREATANYYEWRDVFPELEILVNGMADIVAECEQV--AAWKAWPEKHYDEGGKLDWKVYPFMHTFPAHDESRRTWVESTCVRCPATTKLLRRLPNIRTALFSRLGGGSRIAGHQGWADLANHVLRCHLPLRVPSSGTCGLWVDGEIRQHTEGEIIVFDDSKLHKAFNDSTEDRLVLIVDMRRPSWIPLGIADGEHTAELDAFIDAF 1325 AL E E +++ WR V+PEL++LV+ + I+A+ ++ ++WK WPE HY +GG DWK++PF HTFPAHD +RR ++E TC CP T LL++LP++RTALFSRLGG RI+ H+GWADLANHVLRCHL L VP C +WV GE++ H EG +IVFDDSKLHKA N++ +DR+VLIVD+ RP+ +PLG A G+ T EL+ I+ F Sbjct: 219 ALHGVIEGQEGELEPLQSFHSWRAVYPELQLLVDHLDVILADARRIQGSSWKPWPEMHYSDGGSEDWKIFPFCHTFPAHDITRRCFIEGTCEFCPGTASLLKQLPSVRTALFSRLGGKGRISAHRGWADLANHVLRCHLSLVVPEKRGCAVWVRGEVQSHEEGGVIVFDDSKLHKACNETVDDRIVLIVDLARPAHLPLGRAVGDRTPELNNLIEYF 435
BLAST of mRNA_H-elongata_contig10372.311.1 vs. uniprot
Match: A0A7S3MI66_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MI66_9STRA) HSP 1 Score: 243 bits (621), Expect = 1.450e-73 Identity = 115/218 (52.75%), Postives = 146/218 (66.97%), Query Frame = 3 Query: 690 PATGADEPPREATANYYEWRDVFPELEILVNGMADIVAECEQVAAWKAWPEKHYDEGGKL----DWKVYPFMHTFPAHDESRRTWVESTCVRCPATTKLLRRLPNIRTALFSRLGGGSRIAGHQGWADLANHVLRCHLPLRVPSSGTCGLWVDGEIRQHTEGEIIVFDDSKLHKAFNDST-EDRLVLIVDMRRPSWIPLGIADGEHTAELDAFIDAFR 1328 P+ G+ E +Y WR++FPELE+L+N +A I E + + W WPE H+ G + DW V+P +HTFPA+ WV STC RCP T KLL+ +P +RTALFSRLG G++++ H GWADLAN+VLRCHL L VP+ GTCGL VDGEI+ H I+VFDDSK H+AFN+ST +R VLI D+ RP IP G A G HT ELD FI F+ Sbjct: 18 PSVGSKRFDTEVAPCFYNWRELFPELEVLLNNIAVIKEESKSIGQWIPWPEDHFTLGDDVENSKDWTVFPLLHTFPAYCPENSKWVGSTCARCPETVKLLKSIPTLRTALFSRLGPGTKLSSHTGWADLANYVLRCHLCLDVPTDGTCGLLVDGEIQYHRPNHILVFDDSKPHRAFNNSTLNNRTVLIFDLWRPQDIPRGTATGNHTDELDGFISQFK 235
BLAST of mRNA_H-elongata_contig10372.311.1 vs. uniprot
Match: A0A6U0VYJ3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0VYJ3_9STRA) HSP 1 Score: 234 bits (598), Expect = 2.140e-69 Identity = 111/238 (46.64%), Postives = 152/238 (63.87%), Query Frame = 3 Query: 648 IAKEHGFHVSGALLPATGADEPPREATANYYEWRDVFPELEILVNGMADIVAECEQVAAWKAWPEKHYDEGGKLDWKVYPFMHTFPAHDESRRTWVESTCVRCPATTKLLRRLPNIRTALFSRLGGGSRIAGHQGWADLANHVLRCHLPLRVPS-----SG-------TCGLWVDGEIRQHTEGEIIVFDDSKLHKAFNDSTEDRLVLIVDMRRPSWIPLGIADGEHTAELDAFIDAF 1325 + E + +L AT A P ++Y W +V+P L+ L++ +I AE + + W WPE H+ +GG +W V+P +TFPA D + W+E C CPATT++LR++P +RTALFSRLG +R++GH GW DLANHVLR HL L VP SG +CG+WV+ E+ H EG+++VFDDS +H A+N S EDR+VLI+D+ RP W+P G A G HT ELDAFID F Sbjct: 50 VLPEDAEEIEASLADATEAPIP-MPVLPSFYPWEEVYPFLQPLIDCAEEIKAEAKAIPMWAEWPEYHFRDGGNAEWNVFPLTYTFPATDPHAQRWLEQPCGLCPATTRVLRKIPGLRTALFSRLGPQTRLSGHTGWEDLANHVLRVHLSLTVPKRNRKPSGLAGEDLSSCGVWVNEEVWGHQEGQLLVFDDSLVHGAYNHSDEDRVVLIIDIERPPWLPPGRATGGHTPELDAFIDQF 286
BLAST of mRNA_H-elongata_contig10372.311.1 vs. uniprot
Match: A0A836CEF1_9STRA (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEF1_9STRA) HSP 1 Score: 240 bits (612), Expect = 1.010e-67 Identity = 121/236 (51.27%), Postives = 148/236 (62.71%), Query Frame = 3 Query: 735 YYEWRDVFPELEILVN--GMADIVAECEQV-AAWKAWPEKHYDEGGKLDWKVYPFMHTFPAHDESRRTWVESTCVRCPATTKLLRRLPNIRTALFSRLGGGSRIAGHQGWADLANHVLRCHLPLRVP------------------------------------SSGTCGLWVDGEIRQHTEGEIIVFDDSKLHKAFNDSTEDRLVLIVDMRRPSWIPLGIADGEHTAELDAFIDAF 1325 + +WRDV+PEL IL+ ++DI+ E V +AWKAWPE HY EGG DWKV PF H FPA D S+ TWV TC CP T LLR+LP +RTALFSRLGGG++I+ H+GW+DLAN VLRCHL L VP S G CG+WV+G+ R H +GEI+VFDDSKLHKA+N S +R+VLIVD+ RP +P G A TAEL+ FI AF Sbjct: 361 FLDWRDVYPELGILLEPQNLSDIMEEMRSVRSAWKAWPETHYSEGGSEDWKVVPFAHCFPACDASKLTWVPHTCAHCPRTVALLRQLPTLRTALFSRLGGGTKISSHRGWSDLANDVLRCHLALVVPPDDPHSRALKGXXXXXXXXXXXXXXXXXXXXXXXXESDGCCGIWVEGQRRAHRQGEIMVFDDSKLHKAYNHSYHERVVLIVDLLRPPHVPRGTARRGMTAELEGFIAAF 596
BLAST of mRNA_H-elongata_contig10372.311.1 vs. uniprot
Match: A0A7S3LIY3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LIY3_9STRA) HSP 1 Score: 225 bits (573), Expect = 1.110e-65 Identity = 107/205 (52.20%), Postives = 141/205 (68.78%), Query Frame = 3 Query: 735 YYEWRDVFPELEILVNGMADIVAECEQVAA---WKAWPEKHYDEGGKLD--WKVYPFMHTFPAHDESRRTWVESTCVRCPATTKLLRRLPNIRTALFSRLGGGSRIAGHQGWADLANHVLRCHLPLRVPS--SGTCGLWVDGEIRQHTEGEIIVFDDSKLHKAFNDSTEDRLVLIVDMRRPSWIPLGIADGEHTAELDAFIDAFR 1328 YY+W+ VFPEL+I+ + I E + W WPE+ G + WKV P ++TFPA+DES W+ S CP TT+LL+++PNIRTALFSRLGG +R++ HQGWADLAN+VLRCHLPL VP + CG+WV+G ++ H G+++VFDDSK HKAFN S +DR+VLI D+ RP IP G+A G HT LD FI +F+ Sbjct: 84 YYDWKKVFPELKIIEDNFKVIQRELVTLMESREWTPWPEERLYNGPQQSGQWKVIPLLYTFPAYDESSSKWITSNNKLCPKTTELLKKIPNIRTALFSRLGGTTRLSQHQGWADLANYVLRCHLPLIVPQPEANLCGMWVEGHVQYHKPGKLLVFDDSKHHKAFNASDQDRMVLIFDILRPKKIPKGLATGGHTEHLDQFISSFQ 288
BLAST of mRNA_H-elongata_contig10372.311.1 vs. uniprot
Match: A0A2R5GA97_9STRA (Aspartate beta-hydroxylase domain-containing protein 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GA97_9STRA) HSP 1 Score: 220 bits (561), Expect = 1.030e-62 Identity = 101/202 (50.00%), Postives = 142/202 (70.30%), Query Frame = 3 Query: 735 YYEWRDVFPELEILVNGMADIVAECEQVAA--WKAWPE-KHYDEGGKL-DWKVYPFMHTFPAHDESRRTWVESTCVRCPATTKLLRRLPNIRTALFSRLGGGSRIAGHQGWADLANHVLRCHLPLRVPSS----GTCGLWVDGEIRQHTEGEIIVFDDSKLHKAFNDSTEDRLVLIVDMRRPSWIPLGIADGEHTAELDAFI 1316 YY+WR+ FPE++ L++ ++V E + + + W WPE K Y + DWKV P MHTFPA D R +E C CP T LL+++P +RT L+SRLG +R++ HQGWADLAN+VLRCHLPL +P+ G+CG+WV+GEI++H E +++VFDDSK+HKA+N S E+R++LI D+ RP +P G+A G HT +LD FI Sbjct: 170 YYDWREYFPEVQGLLDHFDELVEEMKTLTSGRWCPWPEYKLYQAEDQFGDWKVIPLMHTFPAWDSKRTKLIEGNCKACPLTMSLLKKIPGLRTVLYSRLGPRTRLSSHQGWADLANYVLRCHLPLVLPTDEKFRGSCGMWVEGEIQKHKERDVLVFDDSKMHKAYNASEEERIILIFDVVRPDQLPKGLASGGHTEQLDEFI 371 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10372.311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10372.311.1 >prot_H-elongata_contig10372.311.1 ID=prot_H-elongata_contig10372.311.1|Name=mRNA_H-elongata_contig10372.311.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=345bp MKRVSLENEKSAEREGEMVPQERQQEQKDMKSVLPQPASRASRPPASPSLback to top mRNA from alignment at H-elongata_contig10372:122..2928- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10372.311.1 ID=mRNA_H-elongata_contig10372.311.1|Name=mRNA_H-elongata_contig10372.311.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2807bp|location=Sequence derived from alignment at H-elongata_contig10372:122..2928- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10372:122..2928- >mRNA_H-elongata_contig10372.311.1 ID=mRNA_H-elongata_contig10372.311.1|Name=mRNA_H-elongata_contig10372.311.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2070bp|location=Sequence derived from alignment at H-elongata_contig10372:122..2928- (Himanthalia elongata Himel1 dioecious)back to top |