mRNA_H-elongata_contig103710.309.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103710.309.1
Unique NamemRNA_H-elongata_contig103710.309.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: A0A6H5KYW9_9PHAE (CULLIN_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW9_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 4.890e-54
Identity = 93/97 (95.88%), Postives = 96/97 (98.97%), Query Frame = 1 
Query:    1 QMGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
            +MGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVN+QFAGNSLLQKALKEAFV+FVNRDVGKFKNADLMCSFCDRILKTGGEKL DAEV
Sbjct:  319 EMGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNDQFAGNSLLQKALKEAFVDFVNRDVGKFKNADLMCSFCDRILKTGGEKLGDAEV 415
[Close]
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: W7TKB6_9STRA (Cullin protein 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKB6_9STRA)

HSP 1 Score: 150 bits (378), Expect = 9.150e-45
Identity = 76/97 (78.35%), Postives = 84/97 (86.60%), Query Frame = 1 
Query:    4 MGNEIIKRREAKI-EGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
            MGNE+I +REA+I E GEKDTNQDPNFVK LL+LHDK++ VVN QF  NSL  KALKEAFVEFVN+DVGKFKNADL+ SFCDRILK GGEKL DAEV
Sbjct:   26 MGNEVINQREARIHEEGEKDTNQDPNFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEAFVEFVNKDVGKFKNADLLSSFCDRILKKGGEKLGDAEV 122
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BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: D7FJN2_ECTSI (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN2_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 1.460e-44
Identity = 82/96 (85.42%), Postives = 85/96 (88.54%), Query Frame = 1 
Query:    1 QMGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAE 288
            +M NEIIKR  AKIEGGEKD NQDPNFVKELLALH KYMAVVN+QF GNSLLQKAL  AFV FVNRDVGKFKNADLMCSFCDRI+KTGGEKL D E
Sbjct:   56 EMRNEIIKRPGAKIEGGEKDINQDPNFVKELLALHGKYMAVVNDQFVGNSLLQKAL--AFVGFVNRDVGKFKNADLMCSFCDRIMKTGGEKLGDVE 149
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BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: A0A835YLK2_9STRA (Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK2_9STRA)

HSP 1 Score: 161 bits (407), Expect = 3.500e-44
Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = 1 
Query:    7 GNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
            GN++I RRE +IEGGEKD+NQDP  VKELLALHDKYMAVV EQF GNSLLQKALK+AFVEFVNRDVGKFKNADLM +FCDRILKTGGE+LS+ EV
Sbjct:  323 GNDVIVRREERIEGGEKDSNQDPTVVKELLALHDKYMAVVTEQFGGNSLLQKALKDAFVEFVNRDVGKFKNADLMSNFCDRILKTGGERLSEGEV 417
[Close]
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: F0XVV7_AURAN (CULLIN_2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVV7_AURAN)

HSP 1 Score: 159 bits (403), Expect = 1.250e-43
Identity = 78/96 (81.25%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:    4 MGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
            MGNE+I RREA++E GEKD+NQDP FVKELLALHDKYMAVV+ QFAGN+L QKALKEAFVEF NRDVGKF NA+LM SFCDRILK+GGEKLSD +V
Sbjct:  318 MGNEVINRREARLEAGEKDSNQDPAFVKELLALHDKYMAVVSAQFAGNALFQKALKEAFVEFTNRDVGKFTNAELMSSFCDRILKSGGEKLSDEDV 413
[Close]
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: A0A7S3JSF7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSF7_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.200e-41
Identity = 75/96 (78.12%), Postives = 84/96 (87.50%), Query Frame = 1 
Query:    4 MGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
            MG +II RRE ++E GEKDTNQDP  VKELLALHDKY+AVV +QF+GNSL QKALKEAFVEFVN DVGKF NA+LM SFCDRILK+GGEKLSD E+
Sbjct:  318 MGTDIISRREQRLENGEKDTNQDPALVKELLALHDKYLAVVAQQFSGNSLFQKALKEAFVEFVNHDVGKFSNAELMSSFCDRILKSGGEKLSDEEI 413
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BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: A0A7S3ZYF8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYF8_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.620e-41
Identity = 74/97 (76.29%), Postives = 84/97 (86.60%), Query Frame = 1 
Query:    1 QMGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
            QMGN+II RREA++  G KD+NQDP FVKELLALHDKY+AVV+EQF GN+L QKALKEAFVEF NRDVGK  NA+LM SFCDRILK+GGEKL D +V
Sbjct:  321 QMGNDIIDRREARLSEGAKDSNQDPAFVKELLALHDKYLAVVSEQFGGNALFQKALKEAFVEFANRDVGKHTNAELMSSFCDRILKSGGEKLGDEDV 417
[Close]
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: A0A8J2SP16_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SP16_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.680e-40
Identity = 74/97 (76.29%), Postives = 84/97 (86.60%), Query Frame = 1 
Query:    1 QMGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
            QMGN+II RREA++  G KD+NQDP FVKELLALHDKY+AVV+EQF GN+L QKALKEAFVEF NRDVGK  NA+LM SFCDRILK+GGEKL D +V
Sbjct:  321 QMGNDIIDRREARLSEGAKDSNQDPAFVKELLALHDKYLAVVSEQFGGNALFQKALKEAFVEFANRDVGKHTNAELMSSFCDRILKSGGEKLGDEDV 417
[Close]
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: A0A7S3UPV7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPV7_HETAK)

HSP 1 Score: 141 bits (356), Expect = 7.680e-40
Identity = 74/96 (77.08%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    7 GNEIIKRREAKIEGGEKDTNQ-DPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
            G E+I RREAK+  GE+D    DP +VKELLALHDKYMAVV EQF GNSL QKALKEAFVE VNRDVGK KNADLM SFCDRILKTGGEKL+D +V
Sbjct:  131 GVEVIARREAKLGSGERDPGGGDPAYVKELLALHDKYMAVVTEQFGGNSLFQKALKEAFVEVVNRDVGKMKNADLMSSFCDRILKTGGEKLNDEQV 226
[Close]
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: A0A4D9DID3_9STRA (CULLIN_2 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DID3_9STRA)

HSP 1 Score: 149 bits (375), Expect = 9.810e-40
Identity = 75/97 (77.32%), Postives = 84/97 (86.60%), Query Frame = 1 
Query:    4 MGNEIIKRREAKI-EGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
            MGNE+I +REA++ E GEKDTNQDPNFVK LL+LHDK++ VVN QF  NSL  KALKEAFVEFVN+DVGKFKNADL+ SFCDRILK GGEKL DAEV
Sbjct:  321 MGNEVINQREARMHEEGEKDTNQDPNFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEAFVEFVNKDVGKFKNADLLSSFCDRILKKGGEKLGDAEV 417
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYW9_9PHAE4.890e-5495.88CULLIN_2 domain-containing protein n=2 Tax=Ectocar... [more]
W7TKB6_9STRA9.150e-4578.35Cullin protein 1 n=1 Tax=Nannochloropsis gaditana ... [more]
D7FJN2_ECTSI1.460e-4485.42CULLIN_2 domain-containing protein n=1 Tax=Ectocar... [more]
A0A835YLK2_9STRA3.500e-4483.16Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
F0XVV7_AURAN1.250e-4381.25CULLIN_2 domain-containing protein n=1 Tax=Aureoco... [more]
A0A7S3JSF7_9STRA2.200e-4178.13Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3ZYF8_9STRA2.620e-4176.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SP16_9STRA2.680e-4076.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3UPV7_HETAK7.680e-4077.08Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9DID3_9STRA9.810e-4077.32CULLIN_2 domain-containing protein n=3 Tax=Monodop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103710contigH-elongata_contig103710:851..2007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.5
Seed ortholog evalue7.3e-46
Seed eggNOG ortholog2880.D7FY17
KEGG koko:K03347
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2166@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103710.309.1prot_H-elongata_contig103710.309.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103710 851..2004 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929571.9113262-CDS-H-elongata_contig103710:850..9671622929571.9113262-CDS-H-elongata_contig103710:850..967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103710 851..967 -
1691679075.4867926-CDS-H-elongata_contig103710:850..9671691679075.4867926-CDS-H-elongata_contig103710:850..967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103710 851..967 -
1622929571.922955-CDS-H-elongata_contig103710:1833..20041622929571.922955-CDS-H-elongata_contig103710:1833..2004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103710 1834..2004 -
1691679075.4986515-CDS-H-elongata_contig103710:1833..20041691679075.4986515-CDS-H-elongata_contig103710:1833..2004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103710 1834..2004 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929571.9359002-UTR-H-elongata_contig103710:2004..20071622929571.9359002-UTR-H-elongata_contig103710:2004..2007Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103710 2005..2007 -
1691679075.5060835-UTR-H-elongata_contig103710:2004..20071691679075.5060835-UTR-H-elongata_contig103710:2004..2007Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig103710 2005..2007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103710.309.1

>prot_H-elongata_contig103710.309.1 ID=prot_H-elongata_contig103710.309.1|Name=mRNA_H-elongata_contig103710.309.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSL
LQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV
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mRNA from alignment at H-elongata_contig103710:851..2007-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103710.309.1 ID=mRNA_H-elongata_contig103710.309.1|Name=mRNA_H-elongata_contig103710.309.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1157bp|location=Sequence derived from alignment at H-elongata_contig103710:851..2007- (Himanthalia elongata Himel1 dioecious)
CAGATGGGCAACGAAATCATCAAGCGACGGGAAGCGAAGATCGAGGGAGG
GGAGAAGGACACGAACCAGGACCCGAACTTCGTGAAGGAACTGCTGGCCC
TGCACGACAAGTACATGGCCGTGGTCAACGAGCAGTTCGCTGGAAACTCG
CTCCTCCAAAAGGCCCTCAAAGAGGTTTGAAAAATGGGGCTGCAGTTGTA
CGTCAGTTTTTCTTTTCTTTCTTTCCTTTCCCTTTCCCTTTTTCTTTCTA
TTTCCCTTTTTTTTTTTTGGACTTATTTTCGATATTATCCCATATCGCCC
CTTTCTTTCTTTATAACTCCCTAGAGTTTGGGATGGCGACGGCTGGCTCG
AACAGGCTAACACATGTGGCGCCGCGTGACGAAGACGCCGATACAACAGT
GGCATATATATATATATATATATATATATGCCACTAGTTTCATGTGCTGT
AACACTGTGCGCCACGGCCGATATCACTGCAAACGATTGATGTAACCGCA
AGTCTTGAAGCCAATGAAATGAAGCGCGTTTGGTGCGGTACATGTTGTGT
AGCACACGACGGATGAACCCCCACGTGAACTTCCATCGCGAGAGGTTTCC
CAAAAGCGTAGGCAGGAGTCACACTACAGTATAGTAGATAGGTAAATCCT
GTAGGACAACAAGCGGGAATGCATCGGCAGCGTGTGGCGTTAAGGTGGGA
TTGTTTGGTACATAAACCTTAGCGCTTTGATTAGAAAGGGAGAGCGGAGG
GGGCAACGGCAAAAACCGAAAAGCACACACATAATCCCCCCTTCTTCCCC
CCCGCCCCCCCCTCACTCAAAGCAAAACACTTGTTGTGTGCTGCTTGCTG
CTGATCTGAATGTTATCGTTCCTGCGAAGGCACTGATCTGAATGCGGGAT
GATTTTTTCCCTGTCCCTCTCACCAACTGCTTTTATACGTTTCACCACAT
GTTTAGTATCGTCGCTTGAACGAAAACGGTCGCTCGTTTTTAGTCTTGGG
TTTTTAGTTTTTTTTCTTTTCTTATGTGATCGTATAATAGGCCTTTGTGG
AGTTCGTTAACCGCGACGTCGGCAAGTTCAAGAACGCCGACCTCATGTGC
AGCTTCTGCGACCGCATTCTCAAGACGGGGGGAGAGAAGCTCAGCGACGC
GGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig103710:851..2007-

>mRNA_H-elongata_contig103710.309.1 ID=mRNA_H-elongata_contig103710.309.1|Name=mRNA_H-elongata_contig103710.309.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig103710:851..2007- (Himanthalia elongata Himel1 dioecious)
ATGGGCAACGAAATCATCAAGCGACGGGAAGCGAAGATCGAGGGAGGGGA
GAAGGACACGAACCAGGACCCGAACTTCGTGAAGGAACTGCTGGCCCTGC
ACGACAAGTACATGGCCGTGGTCAACGAGCAGTTCGCTGGAAACTCGCTC
CTCCAAAAGGCCCTCAAAGAGATGGGCAACGAAATCATCAAGCGACGGGA
AGCGAAGATCGAGGGAGGGGAGAAGGACACGAACCAGGACCCGAACTTCG
TGAAGGAACTGCTGGCCCTGCACGACAAGTACATGGCCGTGGTCAACGAG
CAGTTCGCTGGAAACTCGCTCCTCCAAAAGGCCCTCAAAGAGGCCTTTGT
GGAGTTCGTTAACCGCGACGTCGGCAAGTTCAAGAACGCCGACCTCATGT
GCAGCTTCTGCGACCGCATTCTCAAGACGGGGGGAGAGAAGCTCAGCGAC
GCGGAGGTGGCCTTTGTGGAGTTCGTTAACCGCGACGTCGGCAAGTTCAA
GAACGCCGACCTCATGTGCAGCTTCTGCGACCGCATTCTCAAGACGGGGG
GAGAGAAGCTCAGCGACGCGGAGGTG
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