mRNA_H-elongata_contig103710.309.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: A0A6H5KYW9_9PHAE (CULLIN_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW9_9PHAE) HSP 1 Score: 188 bits (477), Expect = 4.890e-54 Identity = 93/97 (95.88%), Postives = 96/97 (98.97%), Query Frame = 1 Query: 1 QMGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
+MGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVN+QFAGNSLLQKALKEAFV+FVNRDVGKFKNADLMCSFCDRILKTGGEKL DAEV
Sbjct: 319 EMGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNDQFAGNSLLQKALKEAFVDFVNRDVGKFKNADLMCSFCDRILKTGGEKLGDAEV 415
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: W7TKB6_9STRA (Cullin protein 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKB6_9STRA) HSP 1 Score: 150 bits (378), Expect = 9.150e-45 Identity = 76/97 (78.35%), Postives = 84/97 (86.60%), Query Frame = 1 Query: 4 MGNEIIKRREAKI-EGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
MGNE+I +REA+I E GEKDTNQDPNFVK LL+LHDK++ VVN QF NSL KALKEAFVEFVN+DVGKFKNADL+ SFCDRILK GGEKL DAEV
Sbjct: 26 MGNEVINQREARIHEEGEKDTNQDPNFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEAFVEFVNKDVGKFKNADLLSSFCDRILKKGGEKLGDAEV 122
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: D7FJN2_ECTSI (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN2_ECTSI) HSP 1 Score: 159 bits (401), Expect = 1.460e-44 Identity = 82/96 (85.42%), Postives = 85/96 (88.54%), Query Frame = 1 Query: 1 QMGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAE 288
+M NEIIKR AKIEGGEKD NQDPNFVKELLALH KYMAVVN+QF GNSLLQKAL AFV FVNRDVGKFKNADLMCSFCDRI+KTGGEKL D E
Sbjct: 56 EMRNEIIKRPGAKIEGGEKDINQDPNFVKELLALHGKYMAVVNDQFVGNSLLQKAL--AFVGFVNRDVGKFKNADLMCSFCDRIMKTGGEKLGDVE 149
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: A0A835YLK2_9STRA (Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK2_9STRA) HSP 1 Score: 161 bits (407), Expect = 3.500e-44 Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = 1 Query: 7 GNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
GN++I RRE +IEGGEKD+NQDP VKELLALHDKYMAVV EQF GNSLLQKALK+AFVEFVNRDVGKFKNADLM +FCDRILKTGGE+LS+ EV
Sbjct: 323 GNDVIVRREERIEGGEKDSNQDPTVVKELLALHDKYMAVVTEQFGGNSLLQKALKDAFVEFVNRDVGKFKNADLMSNFCDRILKTGGERLSEGEV 417
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: F0XVV7_AURAN (CULLIN_2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVV7_AURAN) HSP 1 Score: 159 bits (403), Expect = 1.250e-43 Identity = 78/96 (81.25%), Postives = 87/96 (90.62%), Query Frame = 1 Query: 4 MGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
MGNE+I RREA++E GEKD+NQDP FVKELLALHDKYMAVV+ QFAGN+L QKALKEAFVEF NRDVGKF NA+LM SFCDRILK+GGEKLSD +V
Sbjct: 318 MGNEVINRREARLEAGEKDSNQDPAFVKELLALHDKYMAVVSAQFAGNALFQKALKEAFVEFTNRDVGKFTNAELMSSFCDRILKSGGEKLSDEDV 413
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: A0A7S3JSF7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSF7_9STRA) HSP 1 Score: 153 bits (387), Expect = 2.200e-41 Identity = 75/96 (78.12%), Postives = 84/96 (87.50%), Query Frame = 1 Query: 4 MGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
MG +II RRE ++E GEKDTNQDP VKELLALHDKY+AVV +QF+GNSL QKALKEAFVEFVN DVGKF NA+LM SFCDRILK+GGEKLSD E+
Sbjct: 318 MGTDIISRREQRLENGEKDTNQDPALVKELLALHDKYLAVVAQQFSGNSLFQKALKEAFVEFVNHDVGKFSNAELMSSFCDRILKSGGEKLSDEEI 413
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: A0A7S3ZYF8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYF8_9STRA) HSP 1 Score: 150 bits (379), Expect = 2.620e-41 Identity = 74/97 (76.29%), Postives = 84/97 (86.60%), Query Frame = 1 Query: 1 QMGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
QMGN+II RREA++ G KD+NQDP FVKELLALHDKY+AVV+EQF GN+L QKALKEAFVEF NRDVGK NA+LM SFCDRILK+GGEKL D +V
Sbjct: 321 QMGNDIIDRREARLSEGAKDSNQDPAFVKELLALHDKYLAVVSEQFGGNALFQKALKEAFVEFANRDVGKHTNAELMSSFCDRILKSGGEKLGDEDV 417
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: A0A8J2SP16_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SP16_9STRA) HSP 1 Score: 150 bits (379), Expect = 2.680e-40 Identity = 74/97 (76.29%), Postives = 84/97 (86.60%), Query Frame = 1 Query: 1 QMGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
QMGN+II RREA++ G KD+NQDP FVKELLALHDKY+AVV+EQF GN+L QKALKEAFVEF NRDVGK NA+LM SFCDRILK+GGEKL D +V
Sbjct: 321 QMGNDIIDRREARLSEGAKDSNQDPAFVKELLALHDKYLAVVSEQFGGNALFQKALKEAFVEFANRDVGKHTNAELMSSFCDRILKSGGEKLGDEDV 417
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: A0A7S3UPV7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPV7_HETAK) HSP 1 Score: 141 bits (356), Expect = 7.680e-40 Identity = 74/96 (77.08%), Postives = 80/96 (83.33%), Query Frame = 1 Query: 7 GNEIIKRREAKIEGGEKDTNQ-DPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
G E+I RREAK+ GE+D DP +VKELLALHDKYMAVV EQF GNSL QKALKEAFVE VNRDVGK KNADLM SFCDRILKTGGEKL+D +V
Sbjct: 131 GVEVIARREAKLGSGERDPGGGDPAYVKELLALHDKYMAVVTEQFGGNSLFQKALKEAFVEVVNRDVGKMKNADLMSSFCDRILKTGGEKLNDEQV 226
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Match: A0A4D9DID3_9STRA (CULLIN_2 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DID3_9STRA) HSP 1 Score: 149 bits (375), Expect = 9.810e-40 Identity = 75/97 (77.32%), Postives = 84/97 (86.60%), Query Frame = 1 Query: 4 MGNEIIKRREAKI-EGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLLQKALKEAFVEFVNRDVGKFKNADLMCSFCDRILKTGGEKLSDAEV 291
MGNE+I +REA++ E GEKDTNQDPNFVK LL+LHDK++ VVN QF NSL KALKEAFVEFVN+DVGKFKNADL+ SFCDRILK GGEKL DAEV
Sbjct: 321 MGNEVINQREARMHEEGEKDTNQDPNFVKALLSLHDKFVGVVNAQFEKNSLFHKALKEAFVEFVNKDVGKFKNADLLSSFCDRILKKGGEKLGDAEV 417 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103710.309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103710.309.1 >prot_H-elongata_contig103710.309.1 ID=prot_H-elongata_contig103710.309.1|Name=mRNA_H-elongata_contig103710.309.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp MGNEIIKRREAKIEGGEKDTNQDPNFVKELLALHDKYMAVVNEQFAGNSLback to top mRNA from alignment at H-elongata_contig103710:851..2007- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103710.309.1 ID=mRNA_H-elongata_contig103710.309.1|Name=mRNA_H-elongata_contig103710.309.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1157bp|location=Sequence derived from alignment at H-elongata_contig103710:851..2007- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103710:851..2007- >mRNA_H-elongata_contig103710.309.1 ID=mRNA_H-elongata_contig103710.309.1|Name=mRNA_H-elongata_contig103710.309.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig103710:851..2007- (Himanthalia elongata Himel1 dioecious)back to top |