Homology
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match:
D8LAZ6_ECTSI (RNA exonuclease 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ6_ECTSI)
HSP 1 Score: 157 bits (398), Expect = 3.600e-44
Identity = 72/97 (74.23%), Postives = 83/97 (85.57%), Query Frame = 1
Query: 10 SAEKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 300
+AEKAQY+ LDCEMVGVGP GCRSALA CC+VDWDG I+DK+V P ERVTDFRTFVSGV+A L GG+ LRQCQ E+AAI+K+K +VGHAL NDLK
Sbjct: 267 AAEKAQYVALDCEMVGVGPGGCRSALARCCLVDWDGDTIYDKHVTPNERVTDFRTFVSGVKANHLKGGVRLRQCQEEVAAILKDKVLVGHALTNDLK 363
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match:
W7U6T2_9STRA (RNA exonuclease 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6T2_9STRA)
HSP 1 Score: 127 bits (320), Expect = 5.030e-34
Identity = 59/101 (58.42%), Postives = 81/101 (80.20%), Query Frame = 1
Query: 1 DVPSAEKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLKV 303
D+ EK+ Y+GLDCEMVGVG G RSALA +VD+DG++I+D++V P ER+TDFRT+VSGV+AK L LSL++C +++A ++K K IVGHAL+NDL+V
Sbjct: 93 DMTVMEKSLYVGLDCEMVGVGDGGKRSALARVTLVDFDGRVIYDEHVRPRERITDFRTWVSGVKAKHLKAALSLKECILQVADLVKGKIIVGHALKNDLQV 193
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match:
A0A836CG98_9STRA (RNA exonuclease 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG98_9STRA)
HSP 1 Score: 118 bits (295), Expect = 6.550e-31
Identity = 59/101 (58.42%), Postives = 70/101 (69.31%), Query Frame = 1
Query: 7 PSAEKA-QYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGG--LSLRQCQIEIAAIMKEKYIVGHALQNDLK 300
PS E QY+ LDCEMVG G +G SALA CC+ DW G ++ YV P ERVTDFRTFVSG+RA L G ++L +CQ +AAI K + IVGHAL NDLK
Sbjct: 39 PSPEVCEQYVALDCEMVGTGVSGRHSALAQCCITDWHGNTLYCSYVRPPERVTDFRTFVSGIRATHLKGADAVTLLECQKAVAAITKGRIIVGHALHNDLK 139
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match:
A0A1V9YXD8_9STRA (RNA exonuclease 4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YXD8_9STRA)
HSP 1 Score: 117 bits (292), Expect = 8.650e-30
Identity = 50/95 (52.63%), Postives = 71/95 (74.74%), Query Frame = 1
Query: 16 EKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 300
+ + + +DCEMVGVG +G RS LA C +VD+DG +++DK+V P ERVTDFRT VSG+R+K L + QCQ E+A I ++K +VGHAL+ND++
Sbjct: 61 DTSTIVAMDCEMVGVGSDGARSVLARCSIVDFDGNVVYDKHVKPMERVTDFRTHVSGIRSKHLRDAIPFTQCQQEVAEIFEDKILVGHALRNDMQ 155
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match:
A0A067BGR3_SAPPC (RNA exonuclease 4 (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BGR3_SAPPC)
HSP 1 Score: 114 bits (286), Expect = 1.470e-29
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 1
Query: 31 IGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 300
+ +DCEMVGVG +G RS LA C +VD+DG +++D++V P ERVTDFRT VSG+RAK L L QCQ ++AAI K +VGHA++ND++
Sbjct: 73 VAMDCEMVGVGSDGKRSVLARCSIVDFDGNVVYDEHVKPLERVTDFRTHVSGIRAKSLRDALPFEQCQKDVAAIFDGKIVVGHAIRNDMQ 162
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match:
A0A024UI79_9STRA (RNA exonuclease 4 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI79_9STRA)
HSP 1 Score: 116 bits (291), Expect = 1.810e-29
Identity = 48/95 (50.53%), Postives = 72/95 (75.79%), Query Frame = 1
Query: 16 EKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 300
+ + +DCEMVGVG G RS LA C +VD+DG +++D++V P E+VTDFRT VSG+R+K L + +CQ+++AAI+K+K +VGHA++NDL+
Sbjct: 84 DTTSIVAMDCEMVGVGVGGTRSVLARCSIVDFDGNVVYDEHVKPLEKVTDFRTHVSGIRSKSLRKAIPFAKCQVDVAAILKDKILVGHAVRNDLQ 178
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match:
A0A7S1YYA6_TRICV (RNA exonuclease 4 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YYA6_TRICV)
HSP 1 Score: 114 bits (285), Expect = 2.450e-29
Identity = 50/98 (51.02%), Postives = 72/98 (73.47%), Query Frame = 1
Query: 4 VPSAEKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDL 297
VP E+++Y+ +DCEMVG+G G SALA +VDWDGK++ D +V +RVTDFRT+VSGVR+KD+ + C+ ++A I+K K +VGH+L+NDL
Sbjct: 61 VPEPERSRYVAVDCEMVGIGSAGRTSALARTSLVDWDGKVLLDTFVRVPDRVTDFRTWVSGVRSKDIRNAMEPEDCREKVAEILKGKVLVGHSLKNDL 158
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match:
A0A316U9R8_9BASI (RNA exonuclease 4 n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316U9R8_9BASI)
HSP 1 Score: 117 bits (294), Expect = 2.890e-29
Identity = 52/95 (54.74%), Postives = 71/95 (74.74%), Query Frame = 1
Query: 16 EKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 300
E Q+I +DCEMVGVG G S LA +V+W G ++ D++V P E+VTD+RT+VSGVRAKDL G S ++ Q E+AA++K + +VGHA+QNDLK
Sbjct: 166 EPGQFIAIDCEMVGVGEKGSESVLARVSIVNWHGHVLMDRFVKPMEKVTDYRTWVSGVRAKDLQGAPSFKEVQAEVAALVKGRVLVGHAIQNDLK 260
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match:
A0A6G0X6W8_9STRA (RNA exonuclease 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X6W8_9STRA)
HSP 1 Score: 115 bits (287), Expect = 5.550e-29
Identity = 48/95 (50.53%), Postives = 73/95 (76.84%), Query Frame = 1
Query: 16 EKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDLK 300
+ ++ + +DCEMVGVG +G RS LA C +VD+DG +++D++V P E+VTDFRT VSG+R+K L + +CQ ++ AI+K+K +VGHAL+NDL+
Sbjct: 72 DTSKIVAMDCEMVGVGLSGTRSVLARCSIVDFDGNVVYDEHVKPMEKVTDFRTHVSGIRSKSLRNAIPFPKCQQDVGAILKDKILVGHALRNDLQ 166
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Match:
A0A316VDZ4_9BASI (RNA exonuclease 4 n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316VDZ4_9BASI)
HSP 1 Score: 116 bits (290), Expect = 5.940e-29
Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 1
Query: 13 AEKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPAERVTDFRTFVSGVRAKDLIGGLSLRQCQIEIAAIMKEKYIVGHALQNDL 297
AE YI +DCEMVGVGPNG S LA C +V+W G ++ D +V P E+VTD+RT+VSGVRAKDL G + Q ++A ++K + +VGHAL NDL
Sbjct: 149 AEAGTYIAMDCEMVGVGPNGSESVLARCSIVNWHGAVLLDTFVRPQEKVTDYRTWVSGVRAKDLKGAPQFAEVQEKVANLIKGRILVGHALHNDL 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103692.306.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 3.60e-44 / Id = 74.23 Expect = 5.03e-34 / Id = 58.42 Expect = 6.55e-31 / Id = 58.42 Expect = 8.65e-30 / Id = 52.63 Expect = 1.47e-29 / Id = 55.56 Expect = 1.81e-29 / Id = 50.53 Expect = 2.45e-29 / Id = 51.02 Expect = 2.89e-29 / Id = 54.74 Expect = 5.55e-29 / Id = 50.53 Expect = 5.94e-29 / Id = 54.74 Sequence D8LAZ6_ECTSI W7U6T2_9STRA A0A836CG98_9STRA A0A1V9YXD8_9STRA A0A067BGR3_SAPPC A0A024UI79_9STRA A0A7S1YYA6_TRICV A0A316U9R8_9BASI A0A6G0X6W8_9STRA A0A316VDZ4_9BASI Pages
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103692.306.1
>prot_H-elongata_contig103692.306.1 ID=prot_H-elongata_contig103692.306.1|Name=mRNA_H-elongata_contig103692.306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
DVPSAEKAQYIGLDCEMVGVGPNGCRSALAWCCVVDWDGKIIFDKYVNPA back to top mRNA from alignment at H-elongata_contig103692:54..800-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103692.306.1 ID=mRNA_H-elongata_contig103692.306.1|Name=mRNA_H-elongata_contig103692.306.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=747bp|location=Sequence derived from alignment at H-elongata_contig103692:54..800- (Himanthalia elongata Himel1 dioecious)GATGTGCCCTCCGCTGAGAAGGCTCAGTACATCGGGCTGGACTGCGAAAT
GGTGGGCGTCGGACCAAACGGCTGCCGCAGCGCCCTAGCGTGGTGCTGCG
TGGTGGATTGGGACGGCAAAATAAT GTTAGTACTGCAGAGCCCAAGTGTT
TTAGTTTTACGTTGGGAAGGCGAAGTAGCGAGTTAGATTCATGGCCGACT
CCCGCTCGCGTCGTCGTAGTCCTCATTCACCAGGAGCACCGGTGCTGTGA
CGCTCGCATAGTGGACCATCAGCACCAAAACCCGAAACCCTTATGGGCGC
CCCTACAGAAGTACCCTTTCAACCAGCGCTGTTCGATATTAAACGTGAGA
TGGTCTCTCGTACAAACTAAAACTCCAACGAGAATATATCAAAGATGTAT
GGATTGGGGAACAAACCAACCTGTGGCCTACCCATAGGTATATCCCCGAA
ATTTTCTTTCGAGATGGGATTTTTACTCAAATCTTCAGGCCGCTCTCGCT
GTACAGCCCCTTTTATCGCCCCCCCCCGTTTCTCCAAATGCTTGTCTCTG
TGTGGCACAGATTCGACAAGTACGTTAACCCAGCCGAACGTGTAACGGAT
TTCCGAACTTTCGTGAGCGGTGTGCGGGCCAAGGACCTCATTGGGGGCCT
CTCTCTCCGCCAGTGCCAGATAGAGATTGCGGCGATCATGAAGGAGAAAT
ATATAGTAGGCCATGCCTTACAAAACGATCTCAAGGTACAGTATTAA back to top Coding sequence (CDS) from alignment at H-elongata_contig103692:54..800-
>mRNA_H-elongata_contig103692.306.1 ID=mRNA_H-elongata_contig103692.306.1|Name=mRNA_H-elongata_contig103692.306.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig103692:54..800- (Himanthalia elongata Himel1 dioecious) back to top