mRNA_H-elongata_contig10366.305.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig10366.305.1 vs. uniprot
Match: D7G2K2_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K2_ECTSI) HSP 1 Score: 463 bits (1192), Expect = 2.050e-152 Identity = 230/286 (80.42%), Postives = 257/286 (89.86%), Query Frame = 1 Query: 16 QLCKTPQVTVLINRWAKQTRDKTMLLGVDSLDATKGLMHKFLALEEMFEMEPSLADRVHFVQVCFTGAQSRERKVLVVQLQKFVARINSKLGTIDEAGPVQYFLDINLHELSALYSIADVLVITPIRDGMNIVPFEYVVSRECRALPATVVLSEFAGCARSIGGAVLVNPWNTTELTKQMIEAINMEENEREIRSDSFMYSRWRLLVFNLEGVLARHCALPELVHVSVETVATLDALSKERKNMVVVKSPRSRETLDRLLGHTNCVLAAEHGAFIRWGKHARWQAS 873
QLC P V L+ RW+KQTR+KTMLLGVDSLDAT+GL+ KFLA+EEMFEM+P LAD+V+FVQVCFTG SRER VL Q+Q FVAR+NSKLG+IDEAGPVQ+FL++N +ELSALY+IADVLVITPIRDGM++VPFEYVVSRECR LPATVVLSEFAGCARSIGGAVL+NPWNTTE T+QMI AINMEENEREIR SFMYSRWRL+ FNLEGVLAR CALPELVH+ E A+LD+LS+E KNMVVVKSPRSR+TLDRLLG TNCVLAAEHGAFIRWGKHARWQ S
Sbjct: 493 QLCHQPDVMRLMQRWSKQTRNKTMLLGVDSLDATRGLVQKFLAVEEMFEMQPGLADKVNFVQVCFTGPHSRERMVLEAQVQGFVARVNSKLGSIDEAGPVQFFLNVNPNELSALYAIADVLVITPIRDGMDVVPFEYVVSRECRRLPATVVLSEFAGCARSIGGAVLINPWNTTEFTEQMIGAINMEENEREIRQ-SFMYSRWRLVAFNLEGVLARACALPELVHIPAEAAASLDSLSREPKNMVVVKSPRSRDTLDRLLGRTNCVLAAEHGAFIRWGKHARWQVS 777
BLAST of mRNA_H-elongata_contig10366.305.1 vs. uniprot
Match: A0A6H5JHM9_9PHAE (GT20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM9_9PHAE) HSP 1 Score: 285 bits (730), Expect = 2.530e-91 Identity = 151/213 (70.89%), Postives = 163/213 (76.53%), Query Frame = 1 Query: 343 ELSALYSIADVLVITPIRDGMNIVPFEYVVSRECRALPATVVLSEFAGCARSIGGAVLVNPWNTTELTKQMIEAINMEENEREIR-----SD---------------------------------SFMYSRWRLLVFNLEGVLARHCALPELVHVSVETVATLDALSKERKNMVVVKSPRSRETLDRLLGHTNCVLAAEHGAFIRWGKHARWQ 867
ELSALY+IADVLVITPIRDGM++VPFEYVVSRECR LPATVVLSEFAGCARSIGGAVL+NPWNTTE ++MI AINMEENEREIR SD SFMYSRWRL+ FNLEGVLAR CALPELVH+ ET A+LD+LS+E KNMVVVKSPRSR+TLDRLLG TNCVLAAEHGAFIRWGKHA WQ
Sbjct: 42 ELSALYAIADVLVITPIRDGMDVVPFEYVVSRECRRLPATVVLSEFAGCARSIGGAVLINPWNTTEFAEKMIGAINMEENEREIRQAGCWSDFGGXXXXGRQLHDANEGWVRTTARLLQKEHVVMSFMYSRWRLVAFNLEGVLARACALPELVHIPAETAASLDSLSREPKNMVVVKSPRSRDTLDRLLGRTNCVLAAEHGAFIRWGKHAHWQ 254
BLAST of mRNA_H-elongata_contig10366.305.1 vs. uniprot
Match: A0A836CRD5_9STRA (Glycosyltransferase family 20-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRD5_9STRA) HSP 1 Score: 256 bits (655), Expect = 4.890e-74 Identity = 171/429 (39.86%), Postives = 212/429 (49.42%), Query Frame = 1 Query: 58 WAKQTRDKTMLLGVDSLDATKGLMHKFLALEEMFEMEPSLADRVHFVQVCFTG-AQSR---ERKVLVVQLQKFVARINSKLGTIDEAGPVQYFLDINLH------------------------------------ELSALYSIADVLVITPIRDGMNIVPFEYVVSRECRALPATVVLSEFAGCARSIGGAVLVNPWNTTE---------------------LTKQMIEAINMEENEREIRSDS--------------------------------------------------------------------------------------FMYSRWRLLVFNLEGVLARHCALPELVHVSVETVATLDALSKERKN-----------MVVVKSPRSRETLDRLLGHTNCVLAAEHGAFIRWGKHARWQA 870
WA+Q + +LLGVD LDATKGL+HKFLA+EEMF+ EP LA+ V F+QVC G A SR +R+VL Q+ FV RINSKL +DE GPV++FLD+NL EL ALY +ADVLVITPIRDGMNI PFEYVVSRE ATVVLSEFAGCARS+GGA+LVNPW T+ + K +++A++MEE+ER R + F +SR RL+V NLEGVLAR +LPEL+ V + + +L LS+ +VVVKSPRSRE L+R LG TNCVLAAEHGA +RW ++RW+A
Sbjct: 678 WARQLDGRRVLLGVDGLDATKGLVHKFLAVEEMFDREPRLAESVSFIQVCMGGGAHSRVAGDRQVLAAQIHGFVGRINSKLANLDEEGPVKFFLDVNLQFFVETSLQANVQLWKGRAMGLGLTGSXXXXXXXXXQELCALYCLADVLVITPIRDGMNISPFEYVVSREAHGALATVVLSEFAGCARSLGGALLVNPWATSXXXXXXXXXXXXXXXXXXXXXXVAKALMQAMDMEEDERAKRHSNMSSYVWDFTSDGXXXXXXXXXWSTRSMRQLVKGNEGGERTTARLLHKEHVVQPAECTVAAHLISMLTARFAYLTXXXXXXXXXXXAFAFSRCRLIVLNLEGVLARATSLPELLTVPPDVLESLRLLSEXXXXXXXXXXXXXXXVVVVKSPRSREALERCLGQTNCVLAAEHGALMRWSLNSRWEA 1106
BLAST of mRNA_H-elongata_contig10366.305.1 vs. uniprot
Match: F0Y4H1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4H1_AURAN) HSP 1 Score: 200 bits (509), Expect = 5.590e-56 Identity = 135/321 (42.06%), Postives = 174/321 (54.21%), Query Frame = 1 Query: 49 INRWAKQTRDKTMLLGVDSLDATKGLMHKFLALEEMFEMEPSLADRVHFVQVCF----TGAQSRERKVLVVQLQKFVARINSKLGTIDEAGPVQYFL-DINLHE----LSALYSIADVLVITPIRDGMNIVPFEYVVSRECRALPATVVLSEFAGCARSIGGAVLVNPWNTTELTK---------------------------------QMIEAINMEENE---REIRSDSFM--YSRW--RLLVFNLEGVLARHCALPELVHVSVETVATLDALSKERKN-MVVVKSPRSRETLDRLLG-----HTNCVLAAEHGAFIRW 846
I R Q +T+ LGVD+LD TKGL+HK LA EE+F+ P LAD + FVQV Q E+ L V+RINS+ T+D GPVQYF D L+AL+S+ADVLVITPIRDGMN+VPFEY+V+RE V+LSEFAGCARS+GGAVLVNPW+T L Q+ EA + + RE+ + Y++ RL+VF LEGVLA+ AL EL+ V T+ + AL ++ N +VVV S R+ + L R+ H N LAAE G +RW
Sbjct: 229 IQRLESQLAGRTLFLGVDTLDPTKGLVHKLLAFEELFQRHPELADELVFVQVVLGRGGAATQDAEQGPAFGNLHAMVSRINSQYATLDFEGPVQYFAADARAMPGEATLAALFSLADVLVITPIRDGMNVVPFEYLVAREAHEKIGAVLLSEFAGCARSLGGAVLVNPWDTARLRSLRARGVERRRAHEHMLQYVSTFTARSWAKRFLDQLTEASETKASRTLCRELTVPQLLQPYAKTSRRLVVFELEGVLAKPTALSELIDVGERTLDHIAALCRDDCNRLVVVLSARTADALSRIFAPIAEKHVNLALAAEEGLSVRW 549
BLAST of mRNA_H-elongata_contig10366.305.1 vs. uniprot
Match: A0A0W8D9Y2_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D9Y2_PHYNI) HSP 1 Score: 176 bits (445), Expect = 2.200e-46 Identity = 110/243 (45.27%), Postives = 146/243 (60.08%), Query Frame = 1 Query: 67 QTRDKTMLLGVDSLDATKGLMHKFLALEEMFEMEPSLADRVHFVQVCFTGAQSRERKVLVVQLQKFVARINSKLGTIDEAGPVQYF-LDINLHELSALYSIADVLVITPIRDGMNIVPFEYVVSRECRALPATVVLSEFAGCARSIGGAVLVNPWNTTELTKQMIEAINMEENEREIRSDSFMYSRWRLLVFNLEGVLARHCA---LPELVHVSVETVATLDALSKERKNMVVVKSPRSRETL 783
Q DK ++LGVD LD TKGL+HK LA+EE+F +P LA V F+Q+ TGA E L Q++ V+RINSKL I GPVQY +I + L ALY++AD LVITP+RDGMN VPF Y+V RE A V+LSEFAGCA+S+GGA LVNPWNT ELT + E++ ++N+ +R+ MYS + + H A L +L S E ++ R++M S SR +
Sbjct: 341 QFSDKKVILGVDQLDQTKGLVHKLLAVEELFTHKPELAKEVVFLQIV-TGASVYE-SALESQVESLVSRINSKLQDIGTEGPVQYLNKEIAVEALIALYALADALVITPVRDGMNTVPFGYIVCREATDKHARVILSEFAGCAQSLGGARLVNPWNTEELTDALQESL--QDNDEVMRAHQHMYSY-------VSSFTSWHWADNFLEQLHECSEENALSVSGRELSRRDMTSAYSRSSRRLI 572
BLAST of mRNA_H-elongata_contig10366.305.1 vs. uniprot
Match: A0A6A3MPS8_9STRA (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] A n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MPS8_9STRA) HSP 1 Score: 176 bits (445), Expect = 5.740e-46 Identity = 109/243 (44.86%), Postives = 147/243 (60.49%), Query Frame = 1 Query: 67 QTRDKTMLLGVDSLDATKGLMHKFLALEEMFEMEPSLADRVHFVQVCFTGAQSRERKVLVVQLQKFVARINSKLGTIDEAGPVQYF-LDINLHELSALYSIADVLVITPIRDGMNIVPFEYVVSRECRALPATVVLSEFAGCARSIGGAVLVNPWNTTELTKQMIEAINMEENEREIRSDSFMYSRWRLLVFNLEGVLARHCA---LPELVHVSVETVATLDALSKERKNMVVVKSPRSRETL 783
Q K ++LGVD LD TKGL+HK LA+EE+F +P LA V F+Q+ TGA E L Q++ V+RINSKL I GPVQY +I + L ALY++AD LVITP+RDGMN +PF YVV RE + A V+LSEFAGCA+S+GGA LVNPWNT ELT+ + +A+ ++N+ +R+ MYS + + H A L +L S E ++ R++M S SR +
Sbjct: 349 QFAGKQVILGVDQLDQTKGLVHKLLAVEELFTQKPELAKEVVFLQIV-TGASVLE-SALESQVESLVSRINSKLQDIGTEGPVQYLNKEIAVEALIALYALADALVITPVRDGMNTIPFGYVVCREAASKHARVILSEFAGCAQSLGGARLVNPWNTEELTEALQDAL--QDNDEVMRAHQHMYSY-------VSSFTSWHWADNFLEQLHECSEENALSVSGRELSRRDMTSAYSRSSRRLI 580
BLAST of mRNA_H-elongata_contig10366.305.1 vs. uniprot
Match: A0A662XC19_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XC19_9STRA) HSP 1 Score: 174 bits (442), Expect = 1.470e-45 Identity = 108/261 (41.38%), Postives = 151/261 (57.85%), Query Frame = 1 Query: 13 LQLCKTPQVTVLINRWAKQTRDKTMLLGVDSLDATKGLMHKFLALEEMFEMEPSLADRVHFVQVCFTGAQSRERKVLVVQLQKFVARINSKLGTIDEAGPVQYF-LDINLHELSALYSIADVLVITPIRDGMNIVPFEYVVSRECRALPATVVLSEFAGCARSIGGAVLVNPWNTTELTKQMIEAINMEENEREIRSDSFMYSRWRLLVFNLEGVLARHCA---LPELVHVSVETVATLDALSKERKNMVVVKSPRSRETL 783
+ L ++ V + + Q K ++LGVD LD TKGL+HK LA+EE+F +P LA V F+Q+ G + L Q++ V+RINSKL I GPVQY DI + L ALY++AD LVITP+RDGMN VPFEYVV RE + A V+LSEFAGCA+S+GGA LVNPWNT EL +++++ ++++ +R+ MYS + + H A L +L S E + R++M S SR +
Sbjct: 463 IALVQSDPVQEQMKQLTSQFAGKHVILGVDQLDLTKGLVHKLLAIEELFTRKPELAKEVMFLQIV-AGTPAVLESALGSQVESLVSRINSKLQDIGTDGPVQYLNKDIAVETLIALYALADALVITPVRDGMNTVPFEYVVCREASSKHARVILSEFAGCAQSLGGARLVNPWNTEELLAALLDSL--QDSDEVMRAHQHMYSY-------VSSFTSWHWADNFLEQLRECSEENALAVSGRELSRRDMTSAYSRSSRRLI 713
BLAST of mRNA_H-elongata_contig10366.305.1 vs. uniprot
Match: A0A329SM09_9STRA (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] A n=13 Tax=Phytophthora TaxID=4783 RepID=A0A329SM09_9STRA) HSP 1 Score: 174 bits (440), Expect = 2.650e-45 Identity = 109/243 (44.86%), Postives = 146/243 (60.08%), Query Frame = 1 Query: 67 QTRDKTMLLGVDSLDATKGLMHKFLALEEMFEMEPSLADRVHFVQVCFTGAQSRERKVLVVQLQKFVARINSKLGTIDEAGPVQYF-LDINLHELSALYSIADVLVITPIRDGMNIVPFEYVVSRECRALPATVVLSEFAGCARSIGGAVLVNPWNTTELTKQMIEAINMEENEREIRSDSFMYSRWRLLVFNLEGVLARHCA---LPELVHVSVETVATLDALSKERKNMVVVKSPRSRETL 783
Q K ++LGVD LD TKGL+HK LA+EE+F +P LA V F+Q+ TGA E L Q++ V+RINSKL I GPVQY +I + L ALY++AD LVITP+RDGMN VPF Y+V RE A V+LSEFAGCA+S+GGA LVNPWNT ELT+ + E++ ++N+ +R+ MYS + + H A L +L S E ++ R++M S SR +
Sbjct: 341 QFSGKKVILGVDQLDQTKGLVHKLLAVEELFTHKPELAKEVVFLQIV-TGASVYE-SALESQVESLVSRINSKLQDIGTEGPVQYLNKEIAVEALIALYALADALVITPVRDGMNTVPFGYIVCREATDKHARVILSEFAGCAQSLGGARLVNPWNTEELTEALQESL--QDNDEVMRAHQHMYSY-------VSSFTSWHWADNFLEQLHECSEENALSVSGRELSRRDMTSAYSRSSRRLI 572
BLAST of mRNA_H-elongata_contig10366.305.1 vs. uniprot
Match: W2FY48_PHYPR (Trehalose-phosphatase n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2FY48_PHYPR) HSP 1 Score: 172 bits (437), Expect = 4.870e-45 Identity = 109/243 (44.86%), Postives = 145/243 (59.67%), Query Frame = 1 Query: 67 QTRDKTMLLGVDSLDATKGLMHKFLALEEMFEMEPSLADRVHFVQVCFTGAQSRERKVLVVQLQKFVARINSKLGTIDEAGPVQYF-LDINLHELSALYSIADVLVITPIRDGMNIVPFEYVVSRECRALPATVVLSEFAGCARSIGGAVLVNPWNTTELTKQMIEAINMEENEREIRSDSFMYSRWRLLVFNLEGVLARHCA---LPELVHVSVETVATLDALSKERKNMVVVKSPRSRETL 783
Q DK ++LGVD LD TKGL+HK LA+EE+F +P LA V F+Q+ TGA E L Q++ V+RINSKL I GPVQY +I + L ALY++AD LVITP+RDGMN VPF Y+V RE A V+LSEFAGCA+S+GGA LVNPWNT ELT + E++ ++N+ + + MYS + + H A L +L S E ++ R++M S SR +
Sbjct: 341 QFSDKKVILGVDQLDQTKGLVHKLLAVEELFTHKPELAKEVVFLQIV-TGASVYE-SALESQVESLVSRINSKLQDIGTEGPVQYLNKEIAVEALIALYALADALVITPVRDGMNTVPFGYIVCREATDKHARVILSEFAGCAQSLGGARLVNPWNTEELTDALQESL--QDNDEVMCAHQHMYSY-------VSSFTSWHWADNFLEQLHECSEENALSVSGRELSRRDMTSAYSRSSRRLI 572
BLAST of mRNA_H-elongata_contig10366.305.1 vs. uniprot
Match: K3WI94_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WI94_GLOUD) HSP 1 Score: 171 bits (434), Expect = 1.340e-44 Identity = 97/196 (49.49%), Postives = 129/196 (65.82%), Query Frame = 1 Query: 34 QVTVLINRWAKQTRDKTMLLGVDSLDATKGLMHKFLALEEMFEMEPSLADRVHFVQVCFTGAQSRERKVLVVQLQKFVARINSKLGTIDEAGPVQYF-LDINLHELSALYSIADVLVITPIRDGMNIVPFEYVVSRECRALPATVVLSEFAGCARSIGGAVLVNPWNTTELTKQMIEAINMEENEREIRSDSFMYS 618
Q+T + ++A K ++LGVD LD TKGL+HK LA++E+F + P L+ V F+Q+ TG QS L Q++ V+RINSKL I GPVQY DI L ALY++AD LVITPIRDG+N +PFEYVV RE A +VLSEF+G A S+GGA LVNPWNT EL ++ ++ +EN+ +R+ MYS
Sbjct: 37 QITQMTAKFA----GKKVILGVDQLDLTKGLVHKLLAIDELFTVHPELSKDVVFLQIA-TGTQSLFESPLGSQVESLVSRINSKLQDIGAEGPVQYLNKDIPQEALIALYALADTLVITPIRDGLNTIPFEYVVCREAHGKHARIVLSEFSGSAHSLGGAALVNPWNTEELVDALLASL--QENDDVLRAHQSMYS 225 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10366.305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10366.305.1 >prot_H-elongata_contig10366.305.1 ID=prot_H-elongata_contig10366.305.1|Name=mRNA_H-elongata_contig10366.305.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=291bp PPPPLQLCKTPQVTVLINRWAKQTRDKTMLLGVDSLDATKGLMHKFLALEback to top mRNA from alignment at H-elongata_contig10366:466..9144- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10366.305.1 ID=mRNA_H-elongata_contig10366.305.1|Name=mRNA_H-elongata_contig10366.305.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=8679bp|location=Sequence derived from alignment at H-elongata_contig10366:466..9144- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10366:466..9144- >mRNA_H-elongata_contig10366.305.1 ID=mRNA_H-elongata_contig10366.305.1|Name=mRNA_H-elongata_contig10366.305.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1746bp|location=Sequence derived from alignment at H-elongata_contig10366:466..9144- (Himanthalia elongata Himel1 dioecious)back to top |