mRNA_H-elongata_contig103659.304.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig103659.304.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI) HSP 1 Score: 188 bits (477), Expect = 4.800e-53 Identity = 115/302 (38.08%), Postives = 166/302 (54.97%), Query Frame = 3 Query: 255 MPKAGSSTVLSILEGWGTRNNLAHARLTSDTLLSPEEPRRILTGNY-SLVTGGFTEALRSMGGGCGGGCKWFTVFRHPVSRLVSAYYYCRHKNPSDQICGKELVDH--DHVSLHAFAELWSNYGTREFVVSFVTPETIM-NSPAVRAV--------RAEVPGWYKIRLFAEELYRNQTAAE-SFAYEAPSGLHDEA--MEQFLRPAIELLRT-YDAVGLLEDFDNTMRMFDAALGMPGLNWSEEFQKQGVVNEGVNEVRAEQAETLRSAWTDPVLQRFLWLDMYLYDRAVAVHHKQMIRLGL 1112 M KAG STV +L W N+ S L ++ + G+ SL+ G +TE LR GG CKWFT+FRHP+ RLVSAY+YC+ K P D +C +D D L+AFAE W ++G R+F ++FV PE ++ N A + PGWY+++L+ ++ Q E S ++ A + L+P ELL Y AVG+LE ++ ++ +F+ ALGMPG +W E F G N E+AE L +WTDP L+R+L LD+ LYD AV+VH++Q+ + GL Sbjct: 1 MNKAGGSTVKYMLAPWTKAQNVTVGLYDSPQWLEGKDFAQDFLGDENSLMWGAYTEGLRPFGGLGLRECKWFTIFRHPIPRLVSAYFYCK-KKPQDGLCATVALDANADDTDLYAFAEHWGDFGLRQFALAFVLPEELLANKVKYDATGICTPYHGKRSCPGWYELKLYLQQQLDEQEQGEGSRGWDGSGAAASGAATISHLLQPVQELLTNEYAAVGVLEQWETSLLLFNEALGMPGFDWPETFGSIGKKNSD-GTFHNEEAEMLLRSWTDPRLRRYLSLDLLLYDYAVSVHNQQVDKYGL 300
BLAST of mRNA_H-elongata_contig103659.304.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI) HSP 1 Score: 186 bits (472), Expect = 3.030e-51 Identity = 120/351 (34.19%), Postives = 182/351 (51.85%), Query Frame = 3 Query: 165 HHARP-PVPSADDCATTAAPMI--------DEGCWRYQGMPKAGSSTVLSIL-EGWGTRNNL----------AHARLTSDTLLSPEEPRRILTGNYSLVTGGFTEALRSMGGGCGGG----CKWFTVFRHPVSRLVSAYYYCRHKNPSDQICGKELVDHDHVSLHAFAELWSNYGTREFVVSFVTPETIM------NSPAVRAVRAE----VPGWYKIRLFAEELYRNQTAAESFAYEAPSGLHDEAMEQFLRPAIELLR-TYDAVGLLEDFDNTMRMFDAALGMPGLNWSEEFQKQGVVNEGVNEVRAEQAETLRSAWTDPVLQRFLWLDMYLYDRAVAVHHKQMIRLGL 1112 HHA P P A + + AP + + CW + + KAG +TV +L + WG+ + +A + +L SP +S GG+ EALR C+WFTVFRHPVSRLVSAYYYCR ++PSDQ+C E V +V L FA W N+ R+F + FV+ + + N + AE +PGWY ++LF + R+ A ++ +P G +E RP ++LLR Y VG+LED++ T+ +FD+AL MPG+ W EEF++ G +N + E+ + L+ A +DP + + L LD+ LY +AV + ++Q G+ Sbjct: 55 HHAHVLPRPDAAEKSPQDAPALNIEDSPRSENRCWIFNHLQKAGGTTVKRLLFDSWGSESTTYDSYQWKKGQGYAESVAASLASP--------AGWSAAAGGYLEALRRTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCR-EDPSDQLCASEFVSSRNVDLVTFARHWGNFALRQFALGFVSHDKVKDFLVSPNGGGAMGLTAEQVELMPGWYMLKLFLND--RSGVADDT----SPEGTR---LEYMFRPVVDLLRDNYAVVGILEDWNATLSLFDSALDMPGMTWREEFERSGKLNVDTR-FKGEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQRHSYGI 386
BLAST of mRNA_H-elongata_contig103659.304.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE) HSP 1 Score: 178 bits (452), Expect = 6.470e-49 Identity = 102/302 (33.77%), Postives = 158/302 (52.32%), Query Frame = 3 Query: 237 CWRYQGMPKAGSSTVLSILEGWGTRNNLAHARLTSDTLLSPEEPRRILTGNYSLVT-GGFTEALRSMGGGCGGGCKWFTVFRHPVSRLVSAYYYCRHKNPSDQICGKELVDHDHVSLHAFAELWSNYGTREFVVSFVTPETIMNSPAVRAVRAE--------VPGWYKIRLFAEELYRNQTAAESFAYEAPSGLHDEAMEQFLRPAIELLRT-YDAVGLLEDFDNTMRMFDAALGMPGLNWSEEFQKQGVVNEGVNEVRAEQAETLRSAWTDPVLQRFLWLDMYLYDRAVAVHHKQMIRLGL 1112 CW + M K+G TV ++ + T ++ A S ++ T GG+TE LR CKWFTVFRHPVSR+VSAY+YC+ + DQ+C ++D V L FAE W NYG R+F ++ + E + ++ V + +P WY+ + + +++ + + SGL QFL A E L T Y AVG++E++DN+M +F+ L + +W +EFQK G N G ++ L++AW P L++F+WLD+ LYD A++VH Q+ LG+ Sbjct: 52 CWVFSHMNKSGGMTVRKMIMPFLTEKGVSTALFDDIEWSSGRSYAETFVKENAVFTYGGYTEGLRMYDDR---DCKWFTVFRHPVSRVVSAYFYCQRAH-HDQLCAAVVLDASKVDLLTFAEHWGNYGLRQFALASIKAEDVFHNEVVSEFCQQARGHGDVCIPAWYRQKHYLHLPHQDDFCGPT---QPESGL-----AQFLSSAQETLSTRYAAVGIIEEWDNSMELFNRVLNLRRFDWVKEFQKSGKKNSGGSQFETASKSALKAAWHSPELKKFIWLDILLYDHALSVHRSQVADLGI 341
BLAST of mRNA_H-elongata_contig103659.304.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI) HSP 1 Score: 174 bits (441), Expect = 3.930e-46 Identity = 103/317 (32.49%), Postives = 169/317 (53.31%), Query Frame = 3 Query: 189 SADDCATTAAPMIDEGCWRYQGMPKAGSSTVLSILEG-WGTRNNLAHARLTS--DTLLSPEEPRRILTGNYSLVTGGFTEALRSMGGGCGGGCKWFTVFRHPVSRLVSAYYYCRHKNPSDQICGKELVDHDHVSLHAFAELWSNYGTREFVVSFVTPETIMNSPAVRAVRAEVPGWYKIRLFAEELYRNQTAA-----ESFAYEAPSGLHDEAMEQFLRPAIELLRT-YDAVGLLEDFDNTMRMFDAALGMPGLNWSEEFQKQGVVNEGVNEVRAEQAETLRSAWTDPVLQRFLWLDMYLYDRAVAVHHKQMIRLGL 1112 +A AT +P CW + + K G STV +LE WG+R + + D + + L ++++TGG+TEALR + G GC++FT+FRHP++R+VSAY+YCR + D C E++ V L FA+ W N+ R+F + FV + + Y+++++ E + A++ + D + + L+PA++L+R Y AVG+LE ++ T+R+FD L MP +NW E+F + G + + + E ETL+ AWTD L++++ LD+ LY+ AV V H+Q GL Sbjct: 161 AASVAATVQSPASPGQCWVFMHLQKCGGSTVKDLLEDRWGSRFFIYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALR-LSEPVGAGCRFFTLFRHPIARMVSAYFYCRSVS-GDVACASEVMQAKDVDLLTFAKHWGNFALRQFALGFVPSDDVQE--------------YQLKMYLERPQKEDGGVLGQREAMTAHQDAAATPDAPLYELLQPAMDLVRDGYVAVGILEQWNTTLRLFDHTLDMPVMNWEEQFAESGKHHVDIVNKQLE-IETLQQAWTDSELKKYMRLDLLLYEHAVDVFHQQARSHGL 460
BLAST of mRNA_H-elongata_contig103659.304.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI) HSP 1 Score: 172 bits (436), Expect = 2.070e-45 Identity = 104/311 (33.44%), Postives = 177/311 (56.91%), Query Frame = 3 Query: 237 CWRYQGMPKAGSSTVLSILE-GWGTRNNLAHA---RLTSDTLLSPEEPRRILTGN-YSLVTGGFTEALRSMGGGCGGGCKWFTVFRHPVSRLVSAYYYCRHKNPSDQICGKELVDHDHVSLHAFAELWSNYGTREFVVSFVTPETI---MNSPAVRAVR----AEVPGWYKIRLFAEELYRN------QTAAESFAYEAPSGLHDEAMEQFLRPAIELLRT-YDAVGLLEDFDNTMRMFDAALGMPGLNWSEEFQKQGVVNEGVNEVRAEQAETLRSAWTDPVLQRFLWLDMYLYDRAVAVHHKQMIRLGL 1112 CW + + K G STV +L +G+R ++ + +L D +S ++ G ++++ GG+TEALR GC++FT+FRHP++R+VSAY+YCR D C E+VD V L FA+ W N+ R+F + FV + + + +P +A+ ++ GWY+++++ E + Q+ A + ++A + L + + L+PA++L+R+ Y AVG+LE ++ T+ +FD AL +PG+ W +F + G R E +ETL+ AWTD L++++ LD+ LY+ AV V H+Q GL Sbjct: 156 CWVFMHLQKCGGSTVKYMLRRSYGSRYSIYDSNQWKLGDD--ISANFGVKLARGETWNVMAGGYTEALRRSEP-VDAGCRFFTLFRHPIARMVSAYFYCR-STLGDAACASEVVDAKDVDLLTFAKHWGNFAVRQFALGFVPSDGVQEYIRTPEAQALHDFDLKKIAGWYQLKMYLERPEKGDWGVPGQSEAMTVEHDAAATL-EAPLYDLLQPAMDLIRSGYVAVGILEQWNTTLHLFDHALEIPGMYWGAQFAEGGKQRVDYKNKRLE-SETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGL 460
BLAST of mRNA_H-elongata_contig103659.304.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE) HSP 1 Score: 164 bits (415), Expect = 9.770e-44 Identity = 102/295 (34.58%), Postives = 159/295 (53.90%), Query Frame = 3 Query: 237 CWRYQGMPKAGSSTVLSILEGWGTRNNLAHARLTSDTLLSPEEP-RRILTGNYSLVTGGFTEALRSMGGGCGGGCKWFTVFRHPVSRLVSAYYYCRHKNPSDQICGKELVDHDHVSLHAFAELWSNYGTREFVVSFVTPETIMNSPAVRAVRAEVPGWYKIRLFAE-ELYRNQTAAESFAYEAPSGLHDEAMEQFLRPAIELLRT-YDAVGLLEDFDNTMRMFDAALGMPGLNWSEEFQKQGVVNEGVNEVRAEQAETLRSAWTDPVLQRFLWLDMYLYDRAVAVHHKQMIRLGL 1112 CW Y M KAG +++ +++ + N T + + ++IL SL+ G +TE LR G CKWFT+ RHP++RLVSA+ YC PSDQ+C + + ++ FAE W N+G +F ++F +N V V++ P WYK +L+ E L + + S + M + L+P ELLR+ Y AVG+LE ++ +M +FD AL +PG NW+ N V++ +A+ + L ++ TDPVL++ LWLD+ LY+ A +VH Q+ R GL Sbjct: 37 CWVYTDMNKAGGTSIRRMIKDYAAATNTTVGEFTHTQYNAGDRGVQQILDRRPSLIWGAYTEGLRPYATVLG--CKWFTMVRHPIARLVSAFNYCGIV-PSDQLCATRIHKPEDGDIYDFAEHWGNHGVVQFALAFED----LNDILVTEVKS--PPWYKAKLYFEGRLGPSGKTSTSANISTKDVCQNVWMPEILQPVEELLRSKYAAVGILEQWETSMMLFDHALQLPGFNWTSTSASSTPRN--VHDSKAKN-DLLVASMTDPVLKQILWLDILLYEHACSVHKAQLSRYGL 319
BLAST of mRNA_H-elongata_contig103659.304.1 vs. uniprot
Match: A0A6H5L061_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L061_9PHAE) HSP 1 Score: 152 bits (384), Expect = 3.120e-40 Identity = 80/217 (36.87%), Postives = 124/217 (57.14%), Query Frame = 3 Query: 474 FRHPVSRLVSAYYYCRHKNPSDQICGKELVDHDHVSLHAFAELWSNYGTREFVVSFVTPETIMNSPAVRAVRAE---VPGWYKIRLFAEELYRNQTAAESFAYEAPSGLHDEAMEQFLRPAIELL-RTYDAVGLLEDFDNTMRMFDAALGMPGLNWSEEFQKQGVVNEGVNEVRAEQAETLRSAWTDPVLQRFLWLDMYLYDRAVAVHHKQMIRLGL 1112 ++ P+ RLVSAY+YC+ +N D++C ++ + LH FA+ W NYG R+F ++FV E + + R + PGWY+++ + E + E + +D AM L+P +LL R Y AVG+LE ++ +M +F+ AL +P NW + G N + E+A LR+AW DPVL + LWLD++LYD AVAVH+KQ+ G+ Sbjct: 18 YKCPIPRLVSAYFYCK-QNGWDELCASMVLKAGNTDLHTFAKHWGNYGLRQFSLAFVGAEDVFAAEQERGIDGRPVMFPGWYRVKEYFENQF--DVEQERALMQETGASNDLAMSYLLQPVEDLLSRNYSAVGILEKWETSMTLFNKALKVPSFNWQTASRNLGRKNVD-KRLHDEEAHALRAAWDDPVLAKTLWLDIFLYDHAVAVHNKQVEEHGI 230
BLAST of mRNA_H-elongata_contig103659.304.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE) HSP 1 Score: 152 bits (384), Expect = 3.370e-39 Identity = 98/301 (32.56%), Postives = 151/301 (50.17%), Query Frame = 3 Query: 237 CWRYQGMPKAGSSTVLSILEGWGTRNNLAHARLTSDTLLSPEEP-RRILTGNYSLVTGGFTEALRSMGGGCGGGCKWFTVFRHPVSRLVSAYYYCRHKNPSDQICGKELVDHDHVSLHAFAELWSNYGTREFVVSFVTPETIMNSPAVRAVRAEVPGWYKIRLFAEELYR---NQTAAESFAYEAPSGLHDEAME----QFLRPAIELLRT-YDAVGLLEDFDNTMRMFDAALGMPGLNWSEEFQKQGVVNEGVNEVRAEQAETLRSAWTDPVLQRFLWLDMYLYDRAVAVHHKQMIRLGL 1112 CW + KAG +TV + L + N A SD ++ + +L L+ GG+ E LR+ GCKWFT+ RHP++RL+SA+YYC N DQ+C + + ++ FA+ W NY +F + V I A + P W+K +L+ E N + A + HDE L+P ELLR+ Y AVG+LE + +M +FD AL +PG NW+ + N++ E+ L +A TDPVL++++WLD+ LY+ A ++H +Q+ R L Sbjct: 37 CWVFTHNNKAGGTTVKTHLRNYAESRNETVALCHSDWYARGDKGIQDLLNDKPVLIAGGYAEGLRTS---AFQGCKWFTMMRHPIARLISAFYYCSGGN-RDQLCAANIHKPEDGDIYDFAKHWGNYALLQFALGVVDQHEIF------AEEVDAPAWFKAKLYFEGRLGYPGNMSTATNRT------THDEWQSVWIPDILQPVEELLRSNYAAVGILEHWQRSMMLFDHALEIPGFNWTVASASLSP-RKSQNKI-VEKKAMLAAAMTDPVLRQYVWLDLLLYEYACSLHEEQLRRYDL 319
BLAST of mRNA_H-elongata_contig103659.304.1 vs. uniprot
Match: A0A6H5JQM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM0_9PHAE) HSP 1 Score: 136 bits (342), Expect = 1.230e-31 Identity = 97/307 (31.60%), Postives = 147/307 (47.88%), Query Frame = 3 Query: 228 DEGCWRYQGMPKAGSSTVLSIL-EGWGTRNNLAHARLTSDTLLSPEEPRR-------ILTGNYSLVTGGFTEALRSMGGGCGGGCKWFTVFRHPVSRLVSAYYYCRHKNPSDQICGKELVDHDHVSLHAFAELWSNYGTREFVVSFVTPETIMNSPAVRAVRAEVPGWYKIRLFAEELYRNQTAAESFAYEAPSGLHDEAMEQFLRPAIELLRT-YDAVGLLEDFDNTMRMFDAALGMPGLNWSEEFQKQGVVNEGV---NEVRAEQAETLRSAWTDPVLQRFLWLDMYLYDRAVAVHHKQMIRLGL 1112 ++ CW + M K+G+S + E W L DT+ + RR ++ ++ L+ GG E+LR+ CKW T+FRHP++RL+SAY++C + P D +C + L FAELW N+ R+F + V+P + A R R WY ++ E L R A DE +E L P LL T Y AVG+ ++ + TM +F AL M GL+WS + G+ NE V +E ++E R A +P + L LDM LY+ A+ V Q+ + G+ Sbjct: 270 EDSCWIFMHMDKSGASGARRVATERW------RKDELVFDTV----QWRRGDGFAADVMASHWKLLHGGCVESLRNHKERS---CKWLTIFRHPIARLLSAYHHCL-EAPKDPVCPPT----ESTGLVVFAELWGNFAMRQFALESVSPSAVKEWAAQRQARTGTSMWYLVK---EYLARGGIA------------EDEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSMEGLDWSSSWATLGI-NEEVKQDSEYDIAESEPFRQALENPRIVSALRLDMSLYEHAMHVFKDQVAQFGI 542
BLAST of mRNA_H-elongata_contig103659.304.1 vs. uniprot
Match: D8LU75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU75_ECTSI) HSP 1 Score: 129 bits (323), Expect = 5.500e-31 Identity = 84/249 (33.73%), Postives = 122/249 (49.00%), Query Frame = 3 Query: 375 ILTGNYSLVTGGFTEALRSMGGGCGGGCKWFTVFRHPVSRLVSAYYYCRHKNPSDQICGKELVDHDHVSLHAFAELWSNYGTREFVVSFVTPETIMNSPAVRAVRAEVPGWYKIRLFAEELYRNQTAAESFAYEAPSGLHDEAMEQFLRPAIELLRT-YDAVGLLEDFDNTMRMFDAALGMPGLNWSEEFQKQGVVNEGV--NEVRAEQAETLRSAWTDPVLQRFLWLDMYLYDRAVAVHHKQMIRLGL 1112 ++ + L+ GG E+LR+ G CKW T+FRHP++RL+SAY +C P D +C + L AFAELW N+ R+F ++ V+P + A R R WY ++ E L R A DE + L P LL T Y AVG+ ++ TM +F AL M GL+WS + G+ E +E ++E R A +P + L LDM LY+ AV V Q+ + G+ Sbjct: 39 VMASRWKLLHGGCVESLRNHKGRS---CKWITIFRHPIARLLSAYDHCLGA-PKDPVCPPT----ESTGLAAFAELWGNFAMRQFALAAVSPSAVKEWAAQRQARTGTSMWYLVK---EYLARGGIA------------EDEVLGSKLEPVKGLLSTQYAAVGIAQELKTTMVLFSKALSMEGLDWSSSWATLGINEEDKQDSEYDITESEPFRQALENPRIVSALRLDMSLYEHAVHVFKDQVAQFGI 264 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103659.304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103659.304.1 >prot_H-elongata_contig103659.304.1 ID=prot_H-elongata_contig103659.304.1|Name=mRNA_H-elongata_contig103659.304.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=354bp MPVPKALLRCASLALMACQGRSCVEDHLALSTPMCDHHARPPVPSADDCAback to top mRNA from alignment at H-elongata_contig103659:1082..2315+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103659.304.1 ID=mRNA_H-elongata_contig103659.304.1|Name=mRNA_H-elongata_contig103659.304.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1234bp|location=Sequence derived from alignment at H-elongata_contig103659:1082..2315+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103659:1082..2315+ >mRNA_H-elongata_contig103659.304.1 ID=mRNA_H-elongata_contig103659.304.1|Name=mRNA_H-elongata_contig103659.304.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2124bp|location=Sequence derived from alignment at H-elongata_contig103659:1082..2315+ (Himanthalia elongata Himel1 dioecious)back to top |