mRNA_H-elongata_contig103625.302.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig103625.302.1 vs. uniprot
Match: D7FTR7_ECTSI (Cathepsin L-like proteinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTR7_ECTSI) HSP 1 Score: 182 bits (462), Expect = 1.650e-49 Identity = 84/99 (84.85%), Postives = 92/99 (92.93%), Query Frame = 3 Query: 135 QGLMAAVAQQPISVAIEADEMNFQLYSGGVLTAECGTNLDHGVLLVGYGVSEDGVKYWKIKNSWGADWGVDGYILIKREAPQEGGECGILMQASYPVLA 431
Q LM AVAQQP+S+AIEAD+M+FQLYSGGVLTA CGTNLDHGVLLVGYGVSEDGVKYWK+KNSWG +WG +GYIL+KREA QEGGECGIL QASYPVLA
Sbjct: 377 QALMEAVAQQPVSIAIEADQMSFQLYSGGVLTAACGTNLDHGVLLVGYGVSEDGVKYWKVKNSWGPEWGAEGYILLKREADQEGGECGILEQASYPVLA 475
BLAST of mRNA_H-elongata_contig103625.302.1 vs. uniprot
Match: A0A7S2GCU1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCU1_9STRA) HSP 1 Score: 149 bits (377), Expect = 1.950e-38 Identity = 66/98 (67.35%), Postives = 80/98 (81.63%), Query Frame = 3 Query: 135 QGLMAAVAQQPISVAIEADEMNFQLYSGGVLTAECGTNLDHGVLLVGYGVSEDGVKYWKIKNSWGADWGVDGYILIKREAPQEGGECGILMQASYPVL 428
+ LM+AVAQQP+SVAI+A++++FQLYS GVLT CGT+LDHGVL GYG DG YWK+KNSWG+ WG+DGYILI+R Q GG+CGILM ASYP L
Sbjct: 239 EALMSAVAQQPVSVAIQANQLSFQLYSSGVLTGRCGTSLDHGVLAAGYGTYTDGTDYWKVKNSWGSSWGMDGYILIERGNSQTGGQCGILMSASYPTL 336
BLAST of mRNA_H-elongata_contig103625.302.1 vs. uniprot
Match: A0A835ZFS5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFS5_9STRA) HSP 1 Score: 149 bits (377), Expect = 2.920e-38 Identity = 70/99 (70.71%), Postives = 78/99 (78.79%), Query Frame = 3 Query: 132 LQGLMAAVAQQPISVAIEADEMNFQLYSGGVLTAECGTNLDHGVLLVGYGVSEDGVKYWKIKNSWGADWGVDGYILIKREAPQEGGECGILMQASYPVL 428
++ LM AV +QP+SVAIEADE FQ YSGGVL CGT+LDHGVLLVGYG +EDGV YW +KNSWG WG GYI + R APQEGGECGIL ASYPVL
Sbjct: 254 MKSLMKAVKKQPVSVAIEADESAFQFYSGGVLMNGCGTSLDHGVLLVGYGTTEDGVDYWTLKNSWGPSWGDAGYIRVLRGAPQEGGECGILQSASYPVL 352
BLAST of mRNA_H-elongata_contig103625.302.1 vs. uniprot
Match: A0A7S2G3J8_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2G3J8_9DINO) HSP 1 Score: 137 bits (345), Expect = 5.680e-36 Identity = 65/104 (62.50%), Postives = 81/104 (77.88%), Query Frame = 3 Query: 135 QGLMAAVAQQPISVAIEADEMNFQLYSGGVLTAECGTNLDHGVLLVGYGVSEDGVKYWKIKNSWGADWGVDGYILIKREAPQEGGECGILMQASYPVLA*TSLE 446
+ L+ AVAQQP+SVAIEAD+ FQLY+GG+L ECGT LDHGVLLVGYG +E+GV YWK+KNSWG WG +GYI + R P++G ECGI Q +YP++ SLE
Sbjct: 20 EALLEAVAQQPVSVAIEADQTAFQLYTGGILQKECGTKLDHGVLLVGYG-TENGVDYWKVKNSWGPSWGENGYIRLMRGLPKDG-ECGIKDQPTYPIVKKPSLE 121
BLAST of mRNA_H-elongata_contig103625.302.1 vs. uniprot
Match: A0A7S2XZA5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZA5_9STRA) HSP 1 Score: 142 bits (358), Expect = 1.090e-35 Identity = 63/97 (64.95%), Postives = 78/97 (80.41%), Query Frame = 3 Query: 138 GLMAAVAQQPISVAIEADEMNFQLYSGGVLTAECGTNLDHGVLLVGYGVSEDGVKYWKIKNSWGADWGVDGYILIKREAPQEGGECGILMQASYPVL 428
LM AV +QP+++AIEAD+ +FQ YS GV T CGTNLDHGVLLVGYG SEDG YWK+KNSWG WG +G+IL+ + QEGG+CG+L+Q+SYPVL
Sbjct: 239 ALMQAVNRQPVAIAIEADQFSFQFYSSGVFTGSCGTNLDHGVLLVGYG-SEDGQDYWKVKNSWGESWGQNGFILLGKNVEQEGGQCGLLLQSSYPVL 334
BLAST of mRNA_H-elongata_contig103625.302.1 vs. uniprot
Match: A0A835D806_9MAGN (Pept_C1 domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835D806_9MAGN) HSP 1 Score: 134 bits (338), Expect = 9.830e-35 Identity = 59/97 (60.82%), Postives = 72/97 (74.23%), Query Frame = 3 Query: 135 QGLMAAVAQQPISVAIEADEMNFQLYSGGVLTAECGTNLDHGVLLVGYGVSEDGVKYWKIKNSWGADWGVDGYILIKREAPQEGGECGILMQASYPV 425
+ L+ AVA QP+SVAI+A +FQ YS GV T ECGT+LDHGV VGYG S DG KYW +KNSWG +WGVDGYI+++R+ G CGI M+ASYP
Sbjct: 64 KALLKAVANQPVSVAIDASGSDFQFYSSGVFTGECGTSLDHGVTAVGYGTSADGTKYWLVKNSWGTEWGVDGYIMMQRDVDASEGLCGIAMEASYPT 160
BLAST of mRNA_H-elongata_contig103625.302.1 vs. uniprot
Match: A0A2P6RUD4_ROSCH (Putative fruit bromelain n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RUD4_ROSCH) HSP 1 Score: 132 bits (331), Expect = 7.590e-34 Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = 3 Query: 138 GLMAAVAQQPISVAIEADEMNFQLYSGGVLTAECGTNLDHGVLLVGYGVSEDGVKYWKIKNSWGADWGVDGYILIKREAPQEGGECGILMQASYPV 425
L+ AVA QPISVAI+A +FQ YS GV T CGT+LDHGV VGYGVS+DG KYW +KNSWGA+WG +GYI ++R+ + G CGI M+ASYP
Sbjct: 54 ALLKAVANQPISVAIDASGSDFQFYSSGVFTGTCGTSLDHGVTAVGYGVSDDGTKYWLVKNSWGAEWGEEGYIRMQRDVAAQEGLCGIAMEASYPT 149
BLAST of mRNA_H-elongata_contig103625.302.1 vs. uniprot
Match: UPI000D62AFD0 (KDEL-tailed cysteine endopeptidase CEP1-like n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D62AFD0) HSP 1 Score: 130 bits (327), Expect = 8.080e-34 Identity = 57/96 (59.38%), Postives = 70/96 (72.92%), Query Frame = 3 Query: 138 GLMAAVAQQPISVAIEADEMNFQLYSGGVLTAECGTNLDHGVLLVGYGVSEDGVKYWKIKNSWGADWGVDGYILIKREAPQEGGECGILMQASYPV 425
L+ AV+ QP+SVAI+A +FQ YS GV T ECGT LDHGV VGYG SE+G KYW +KNSWG WG +GYI+++R+ + G CGI MQASYP
Sbjct: 11 ALLKAVSSQPVSVAIDASGSDFQFYSSGVFTGECGTELDHGVTAVGYGTSEEGTKYWLVKNSWGTSWGEEGYIMMQRDVDAKEGLCGIAMQASYPT 106
BLAST of mRNA_H-elongata_contig103625.302.1 vs. uniprot
Match: A0A835YQ83_9STRA (Cathepsin L-like proteinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ83_9STRA) HSP 1 Score: 141 bits (355), Expect = 8.930e-34 Identity = 65/102 (63.73%), Postives = 78/102 (76.47%), Query Frame = 3 Query: 138 GLMAAVAQQPISVAIEADEMNFQLYSGGVLTAECGTNLDHGVLLVGYGVSEDGVKYWKIKNSWGADWGVDGYILIKREAPQE----GGECGILMQASYPVLA 431
+M AVA++P++VAIEAD+M FQ YSGGV A CGT LDHGV+LVGYG +DG YWK+KNSWG WG+DGYIL++R A GGECG+LM A YPVLA
Sbjct: 260 SVMRAVARRPLAVAIEADQMAFQFYSGGVFAAPCGTELDHGVVLVGYGTDDDGNDYWKVKNSWGPSWGLDGYILLQRGAAANAGGSGGECGVLMDAIYPVLA 361
BLAST of mRNA_H-elongata_contig103625.302.1 vs. uniprot
Match: A0A834ZY22_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZY22_9MAGN) HSP 1 Score: 135 bits (339), Expect = 1.020e-33 Identity = 59/97 (60.82%), Postives = 72/97 (74.23%), Query Frame = 3 Query: 135 QGLMAAVAQQPISVAIEADEMNFQLYSGGVLTAECGTNLDHGVLLVGYGVSEDGVKYWKIKNSWGADWGVDGYILIKREAPQEGGECGILMQASYPV 425
+ L+ AVA QP+SVAI+A +FQ YS GV T ECGT+LDHGV VGYG S DG KYW +KNSWG +WGVDGYI+++R+ G CGI M+ASYP
Sbjct: 161 KALLKAVANQPVSVAIDASGSDFQFYSSGVFTGECGTSLDHGVTAVGYGTSADGTKYWLVKNSWGTEWGVDGYIMMQRDVDASEGVCGIAMEASYPT 257 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103625.302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig103625.302.1 >prot_H-elongata_contig103625.302.1 ID=prot_H-elongata_contig103625.302.1|Name=mRNA_H-elongata_contig103625.302.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp MLQGLMAAVAQQPISVAIEADEMNFQLYSGGVLTAECGTNLDHGVLLVGYback to top mRNA from alignment at H-elongata_contig103625:310..2263- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig103625.302.1 ID=mRNA_H-elongata_contig103625.302.1|Name=mRNA_H-elongata_contig103625.302.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1954bp|location=Sequence derived from alignment at H-elongata_contig103625:310..2263- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig103625:310..2263- >mRNA_H-elongata_contig103625.302.1 ID=mRNA_H-elongata_contig103625.302.1|Name=mRNA_H-elongata_contig103625.302.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig103625:310..2263- (Himanthalia elongata Himel1 dioecious)back to top |