mRNA_H-elongata_contig10355.295.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10355.295.1
Unique NamemRNA_H-elongata_contig10355.295.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10355.295.1 vs. uniprot
Match: D7FIS1_ECTSI (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS1_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 3.250e-22
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 IGIFPDVGAAYFLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVPRDR 150
            IG+FPDVG A+ LSRLPGGLGQYLGLTGARLRG+DLL+CGLATHLVPRDR
Sbjct:  164 IGLFPDVGTAHVLSRLPGGLGQYLGLTGARLRGNDLLHCGLATHLVPRDR 213
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BLAST of mRNA_H-elongata_contig10355.295.1 vs. uniprot
Match: A0A0V1G7Y7_9BILA (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial (Fragment) n=6 Tax=Eukaryota TaxID=2759 RepID=A0A0V1G7Y7_9BILA)

HSP 1 Score: 76.3 bits (186), Expect = 6.210e-17
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 IGIFPDVGAAYFLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVP 141
            +G+FPDVGA+Y+LSRLPG  G+Y+GLTGARL G ++L CGLATH VP
Sbjct:   45 LGLFPDVGASYYLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVP 91
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BLAST of mRNA_H-elongata_contig10355.295.1 vs. uniprot
Match: UPI0010A5647B (3-hydroxyisobutyryl-CoA hydrolase 1-like n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A5647B)

HSP 1 Score: 79.7 bits (195), Expect = 7.450e-17
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 IGIFPDVGAAYFLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVPRDR 150
            IG+FPDVGA+YFLSRLPG  G+YLGLTG RL G++++ CGLATH VP ++
Sbjct:   39 IGLFPDVGASYFLSRLPGYFGEYLGLTGRRLNGEEMVKCGLATHFVPSEK 88
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BLAST of mRNA_H-elongata_contig10355.295.1 vs. uniprot
Match: A0A2K1JC01_PHYPA (ECH_2 domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JC01_PHYPA)

HSP 1 Score: 81.3 bits (199), Expect = 9.180e-17
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 IGIFPDVGAAYFLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVPRDR 150
            IG+ PDVGA+YFLSRLPG LG+YLGLTG+RL G DLL CGLATH VP  R
Sbjct:  186 IGLHPDVGASYFLSRLPGHLGEYLGLTGSRLDGADLLSCGLATHFVPSQR 235
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BLAST of mRNA_H-elongata_contig10355.295.1 vs. uniprot
Match: A0A6A1VAS5_9ROSI (3-hydroxyisobutyryl-CoA hydrolase 1 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VAS5_9ROSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.000e-16
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 IGIFPDVGAAYFLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVPRDR 150
            +G+FPDVGA+YFLSRLPG  G+Y+GLTG RL G ++L CGLATH VP  R
Sbjct:   29 LGLFPDVGASYFLSRLPGFFGEYVGLTGTRLDGAEMLACGLATHFVPSVR 78
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BLAST of mRNA_H-elongata_contig10355.295.1 vs. uniprot
Match: V4KFR1_EUTSA (ECH_2 domain-containing protein n=4 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KFR1_EUTSA)

HSP 1 Score: 80.1 bits (196), Expect = 2.010e-16
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 IGIFPDVGAAYFLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVPRDR 150
            +G+FPDVGA+YFLSRLPG LG+Y+GLTGARL G ++L CGLATH VP  R
Sbjct:  141 LGLFPDVGASYFLSRLPGFLGEYVGLTGARLDGAEMLACGLATHFVPSTR 190
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BLAST of mRNA_H-elongata_contig10355.295.1 vs. uniprot
Match: A0A438HXA7_VITVI (3-hydroxyisobutyryl-CoA hydrolase 1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HXA7_VITVI)

HSP 1 Score: 78.2 bits (191), Expect = 2.200e-16
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 IGIFPDVGAAYFLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLV 138
            IG FPDVGA+YFLSRLPG  G+YLGLTGARL G+++L CGLATH V
Sbjct:   20 IGFFPDVGASYFLSRLPGSFGEYLGLTGARLDGNEMLACGLATHFV 65
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BLAST of mRNA_H-elongata_contig10355.295.1 vs. uniprot
Match: A0A178UPH4_ARATH (CHY1 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178UPH4_ARATH)

HSP 1 Score: 77.4 bits (189), Expect = 2.350e-16
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 IGIFPDVGAAYFLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVP 141
            +G+FPDVGA+YFLSRLPG  G+Y+GLTGARL G ++L CGLATH VP
Sbjct:  145 LGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVP 191
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BLAST of mRNA_H-elongata_contig10355.295.1 vs. uniprot
Match: A0A178VL47_ARATH (ECH_2 domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178VL47_ARATH)

HSP 1 Score: 79.3 bits (194), Expect = 2.540e-16
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 IGIFPDVGAAYFLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVPRDR 150
            +G+FPDVGA+YFLSRLPG  G+Y+GLTGARL G +LL CGLATH VP  R
Sbjct:  109 LGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAELLACGLATHFVPSTR 158
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BLAST of mRNA_H-elongata_contig10355.295.1 vs. uniprot
Match: UPI000901E296 (3-hydroxyisobutyryl-CoA hydrolase 1-like n=4 Tax=Ipomoea TaxID=4119 RepID=UPI000901E296)

HSP 1 Score: 79.7 bits (195), Expect = 2.840e-16
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 IGIFPDVGAAYFLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVPRDR 150
            +G+FPDVGA+YFLSRLPG  G+YLGLTG+RL G ++L CGLATH VP +R
Sbjct:  147 LGLFPDVGASYFLSRLPGFFGEYLGLTGSRLDGAEMLACGLATHFVPSER 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10355.295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIS1_ECTSI3.250e-2288.00Enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A0V1G7Y7_9BILA6.210e-1770.213-hydroxyisobutyryl-CoA hydrolase, mitochondrial (... [more]
UPI0010A5647B7.450e-1768.003-hydroxyisobutyryl-CoA hydrolase 1-like n=2 Tax=P... [more]
A0A2K1JC01_PHYPA9.180e-1776.00ECH_2 domain-containing protein n=2 Tax=Physcomitr... [more]
A0A6A1VAS5_9ROSI2.000e-1668.003-hydroxyisobutyryl-CoA hydrolase 1 n=1 Tax=Morell... [more]
V4KFR1_EUTSA2.010e-1672.00ECH_2 domain-containing protein n=4 Tax=Eutrema sa... [more]
A0A438HXA7_VITVI2.200e-1676.093-hydroxyisobutyryl-CoA hydrolase 1 n=1 Tax=Vitis ... [more]
A0A178UPH4_ARATH2.350e-1672.34CHY1 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID... [more]
A0A178VL47_ARATH2.540e-1672.00ECH_2 domain-containing protein n=1 Tax=Arabidopsi... [more]
UPI000901E2962.840e-1670.003-hydroxyisobutyryl-CoA hydrolase 1-like n=4 Tax=I... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10355contigH-elongata_contig10355:24..176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog2880.D7FIS1
KEGG rclassRC00004,RC00014,RC00137
KEGG koko:K05605
KEGG ReactionR03158,R05064
KEGG Pathwayko00280,ko00410,ko00640,ko01100,ko01200,map00280,map00410,map00640,map01100,map01200
KEGG ModuleM00013
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016020,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.3-hydroxyisobutyryl-CoA hydrolase activity
EggNOG OGsCOG1024@1,KOG1684@2759
EC3.1.2.4
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929570.5504904-CDS-H-elongata_contig10355:23..1761622929570.5504904-CDS-H-elongata_contig10355:23..176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10355 24..176 +
1691679074.902447-CDS-H-elongata_contig10355:23..1761691679074.902447-CDS-H-elongata_contig10355:23..176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10355 24..176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10355.295.1prot_H-elongata_contig10355.295.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10355 24..176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10355.295.1

>prot_H-elongata_contig10355.295.1 ID=prot_H-elongata_contig10355.295.1|Name=mRNA_H-elongata_contig10355.295.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
IGIFPDVGAAYFLSRLPGGLGQYLGLTGARLRGDDLLYCGLATHLVPRDR
*
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mRNA from alignment at H-elongata_contig10355:24..176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10355.295.1 ID=mRNA_H-elongata_contig10355.295.1|Name=mRNA_H-elongata_contig10355.295.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig10355:24..176+ (Himanthalia elongata Himel1 dioecious)
ATCGGCATCTTTCCCGACGTTGGCGCGGCGTACTTTCTGTCGAGGCTTCC
CGGAGGGCTGGGGCAGTACCTGGGACTCACCGGGGCGAGGCTGAGGGGAG
ACGACTTGCTGTACTGCGGACTGGCCACCCATCTGGTGCCGAGGGACAGG
TGA
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Coding sequence (CDS) from alignment at H-elongata_contig10355:24..176+

>mRNA_H-elongata_contig10355.295.1 ID=mRNA_H-elongata_contig10355.295.1|Name=mRNA_H-elongata_contig10355.295.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig10355:24..176+ (Himanthalia elongata Himel1 dioecious)
ATCGGCATCTTTCCCGACGTTGGCGCGGCGTACTTTCTGTCGAGGCTTCC
CGGAGGGCTGGGGCAGTACCTGGGACTCACCGGGGCGAGGCTGAGGGGAG
ACGACTTGCTGTACTGCGGACTGGCCACCCATCTGGTGCCGAGGGACAGG
TGAATCGGCATCTTTCCCGACGTTGGCGCGGCGTACTTTCTGTCGAGGCT
TCCCGGAGGGCTGGGGCAGTACCTGGGACTCACCGGGGCGAGGCTGAGGG
GAGACGACTTGCTGTACTGCGGACTGGCCACCCATCTGGTGCCGAGGGAC
AGGTGA
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