mRNA_H-elongata_contig10352.291.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10352.291.1
Unique NamemRNA_H-elongata_contig10352.291.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: D8LJA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJA9_ECTSI)

HSP 1 Score: 293 bits (749), Expect = 1.250e-93
Identity = 167/273 (61.17%), Postives = 198/273 (72.53%), Query Frame = 1
Query:    1 IAFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAAQNAWILVTITGVGLQGFGRHVLARVYIKAEKMINEAR-NADSAAN---------GGPGGRRRTGEGEAMGGNETVQL-DSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTALSKHFGPGAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAASRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYAVVIISALVLGYYGPLRAAMSHLRR 786
            IAFGP +MLW+++VG+R  LVIIG+  AFFWL SMA AS+LWTIVPAAQ+AW+L  ITGV L GFGR  LA+VY+K E +INEA  +A  A+N         G  G     G GE  G  +T  + D  E  S  L+LNG+SSSIAAGVGWG IHAVI+VGTALSKH GPGAAFS SCP +PSVIV +LSAQAF  LDLLLMAA FAA+RSGDA L+ +S   H+ AA TTGFN +EGGC  SLPLLY VV ++A+ L  Y PL++AM  LRR
Sbjct:   12 IAFGPSIMLWVVVVGKRPALVIIGLVGAFFWLASMAAASVLWTIVPAAQDAWLLSMITGVVLHGFGRLALAKVYVKTEAVINEAAAHAAPASNAHGSSGRYGGALGAEGSGGVGEGRGERKTGDVPDQPEESSGLLRLNGVSSSIAAGVGWGLIHAVIMVGTALSKHMGPGAAFSPSCPHVPSVIVSALSAQAFVVLDLLLMAAAFAAARSGDAGLMSFSFGLHFAAALTTGFNFIEGGCTASLPLLYGVVALAAIALTRYRPLKSAMIRLRR 284          
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: W7TG16_9STRA (Protein binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG16_9STRA)

HSP 1 Score: 109 bits (272), Expect = 7.580e-24
Identity = 88/248 (35.48%), Postives = 125/248 (50.40%), Query Frame = 1
Query:    1 IAFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIV-PAAQNAWILVTITGVGLQGFGRHVLARVYIKAEKMINEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTAL-SKHFGPGAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAASRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYAVVIISALV 738
            I F P   +++++V RR  LVII I+ AF +LV++ L+S LW +  P  Q A I+V + GV  Q   R VL R+Y + E +I  A                                   H    + LN I+SS+AAG G+G +HAV+I G+ L S +  PG  F+ SC R P V+V++L A AF  +DL  MA TF   R      +      H  A+  T  N +E GC +SLPL+Y V++ + LV
Sbjct:   13 IVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLSSALWAMFGPVKQTAAIMVVL-GVLCQVVMRAVLYRLYHRTEILIKSA----------------------------------NHPVLHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTPLVVVLALLALAFTMMDLSFMALTFLYLRRRKCFRMGVIFLMHSAASGLTILNDVENGCTMSLPLVYVVMVATVLV 225          
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: A0A7S0YB71_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0YB71_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 9.810e-19
Identity = 99/324 (30.56%), Postives = 147/324 (45.37%), Query Frame = 1
Query:    1 IAFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAA---QNAWILVTITGVGLQGFGRHVLARVYIKAEKMINEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSS---LKLNGISSSIAAGVGWGAIHAVIIVGTAL-SKHFGPGAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAA------------------------------SRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYAVVIISAL-----VLGYYGPLRAAMSHLRR*SSFSWIFRQIYPGVSGAGN 846
            I F P +  +  +V  +  L+I+ IT+AFF+L++ + AS+ W IV         W  + + GV  Q   R + A  Y K E +I EA  A S             E +   G+E    DS   I ++   L LN ++  +AAGVG+G +HA+++ G+ L S+ F  G  +  SCP++PS+ V SL+   FF+LD+  M  TF                                +R G  + L   L +H LAA  T FN  + GCV S+ LL  V +I A      +   Y PL  +   L   +SFS+    +  GV GA  
Sbjct:   37 IGFAPFICFFFQIVFPKPQLLIVSITAAFFYLLAASAASVCWYIVDPVIGLGGPWAAI-VPGVFFQFIFRALFAHSYFKVETVI-EASIAKS-------------EEDREDGDENEGEDSGAGIQAAKNRLALNDVACGLAAGVGFGGMHAILLFGSLLASETFDSGVLYQPSCPKVPSLTVSSLNTFCFFFLDVFWMLFTFFGIRRRFLFPRGGGALSDINPLSRPFGSYFGNTRMGGNNALLVCLITHVLAAGFTTFNAFQFGCVFSMTLLPLVTLIVAYLYWSGISNIYLPLAHSNVRLSLPASFSY-GSHVAEGVLGANQ 344          
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: A0A1V9ZVS0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVS0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.620e-18
Identity = 69/237 (29.11%), Postives = 114/237 (48.10%), Query Frame = 1
Query:    4 AFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAAQNAWILVTITGVGLQGFGRHVLARVYIKAEKMINEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTALSKHF-GPGAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAASRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLY 711
            AFGP   L+L++V +R+ LVI+ ITSAFF+L+ + +A+ +W+I+P  Q +        + LQ   R+V   VY++ E  + +     +                                   L LN +++S A+GVG+  + A+++ GT L+    G GAAF+++CP IP V   +LS  A   +D+ LM   F   R    + +   +  H  +  +   NL E GC  S+PL +
Sbjct:   14 AFGPIASLFLLVVAQRAQLVIVSITSAFFYLLGLLVAATIWSIIPPLQTSIQATIPIAIVLQEIFRYVFFVVYVRCELAVKKVTTKQNQ----------------------------------LPLNDLTTSFASGVGFALMRALMLYGTVLAASVQGEGAAFTETCPSIPLVFSSALSTLALTLMDVALMVVAFEGFRKKSIAHIAAVVLIHLGSGLSNLLNLNEVGCKASIPLTF 216          
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: A0A0P1A6Q5_PLAHL (Gammasecretase subunit aph n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6Q5_PLAHL)

HSP 1 Score: 93.6 bits (231), Expect = 4.290e-18
Identity = 70/239 (29.29%), Postives = 111/239 (46.44%), Query Frame = 1
Query:    1 IAFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAAQNAWILVTITGVGLQGFGRHVLARVYIKAEKMINEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTALSKHFGP-GAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAASRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYA 714
            I FGP   L+  +V +R+ LVI+ +++AF WLV++ + + LW ++P  + +       GV +Q   R +   +Y + EK +                               V   SH+     L LN I+SS+A GVG+ A+HA+++ G+ +    G  GAAFS SC  IP +   +LS  A   LD+ LM   F   R     ++      H   A +   N+   GC +S+P+ YA
Sbjct:   19 IGFGPLAALFFFVVAKRAQLVILALSAAFVWLVAILVTATLWHLIPPLKTSLSATVPVGVVVQEAFRMLFFYLYTRTEKAVKR-----------------------------VTTSSHQ-----LPLNDITSSLAGGVGFSAMHALLMFGSLVGSSTGSRGAAFSSSCESIPLIFSAALSTLALTALDVALMVVAFDGYRKRSVLIITVVFGIHMGVALSALANMDTNGCYISIPVHYA 223          
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: A0A484DSN2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSN2_BRELC)

HSP 1 Score: 92.8 bits (229), Expect = 8.030e-18
Identity = 69/239 (28.87%), Postives = 112/239 (46.86%), Query Frame = 1
Query:    1 IAFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAAQNAWILVTITGVGLQGFGRHVLARVYIKAEKMINEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTALSKHFG-PGAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAASRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYA 714
            + FGP   ++  ++ +R+ LVII ++ AF WL+++ + + LW I+PA + +       GV +Q   R +   +Y + E  +                               V   SH+     L LN ++SS+A GVG+  +HA+++ G+ +    G  GAAFS SCP IP V   +LS  A   LD+ LM   F   R   A ++   +  H   A +   N+   GC +S+P+ YA
Sbjct:   19 VGFGPLAAVFFTIIAKRAQLVIISLSGAFVWLIAILVTATLWQIIPALKTSLSATVPVGVVVQEAFRVLFFYLYTRTELAVKR-----------------------------VTTSSHQ-----LPLNDVTSSLAGGVGFSLMHALLMFGSLMGSSTGLRGAAFSNSCPAIPLVFSAALSTLALTALDVSLMVLAFDGYRKRSALIVSAVIIIHMGIALSALANMDTNGCYISIPVHYA 223          
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: F0WMK2_9STRA (Uncharacterized protein AlNc14C158G7692 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMK2_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.440e-17
Identity = 72/254 (28.35%), Postives = 123/254 (48.43%), Query Frame = 1
Query:    4 AFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAAQN---AWILVTITGVGLQGFGRHVLARVYIKAEKMINEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTALSKHFG-PGAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAASRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYAVVIISALVLGYYG 753
            A+GP   L+ IL+G+R+ L+II +TSAF WL+S+ +++ +W I+P  ++   A I VTI    +Q  GR+   ++Y +    I +                             V    H+     L LN  +SS+A+GVG+  +H++++ GT L    G  GAAF   C  +P V   ++++ A    D+ LM   FA  RS + S++   L  H     +   N    GCV+S+P+ Y   +++ +   ++ 
Sbjct:   20 AYGPIATLFFILIGKRAQLIIIALTSAFIWLISVLISATIWQIIPVLKSSAEATICVTIL---IQEIGRYTYFQLYSRGVVAIQK-----------------------------VTTTKHQ-----LPLNDFTSSLASGVGYSLMHSLMVYGTVLGSSTGFRGAAFRDYC-TLPVVFTGAITSLALSISDVALMVMAFAGYRSRNWSIICMVLVLHLGIGLSALANFKSNGCVISIPIHYGGAVLACVGAKFFA 235          
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: A0A2D4BUP9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUP9_PYTIN)

HSP 1 Score: 91.3 bits (225), Expect = 2.750e-17
Identity = 67/238 (28.15%), Postives = 115/238 (48.32%), Query Frame = 1
Query:    4 AFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAAQNAWILVTITGVGLQGFGRHVLARVYIKAEKMINEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTALSKHFGP-GAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAASRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYA 714
            AFGP   L+ +++ +R+ LVI+ ++ AF WL+S+ + + +W I+P  + +        V LQ   R++   +Y + E+ + +   A                             +H+     L LN I+SS+A GVG+  +H++++ G+ ++   G  GAAFS SC  IP ++  +LS  A   +D+ LM   F   R  +A L+      H   A +   N    GC+VS+P+ YA
Sbjct:   20 AFGPLASLFFVVIAKRAQLVILALSGAFLWLISILVTATIWRIIPPLKTSLEATIPLSVVLQEVFRYLFFVMYTRTEQAVQKVTTA-----------------------------THQ-----LPLNDITSSLAGGVGFSLMHSLMMYGSVVASSTGSRGAAFSSSCESIPLILSGALSTLALTVMDVALMVIAFQGYRKMNAMLIGLVALIHLGVALSALANKSTNGCMVSIPIHYA 223          
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: A0A7S2UR59_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UR59_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.970e-17
Identity = 87/277 (31.41%), Postives = 139/277 (50.18%), Query Frame = 1
Query:    1 IAFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAA--QNAWILVTITGVGLQGFGRHVLARVYIKAEKMI-----NEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTAL-SKHFGPGAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAA-----------------------SRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYAVVIISALV 738
            +AF P + L L+L  +++ L+I+  TSAF +L+S   +SL+W  VP++   NA +L+ I  V  Q   R     VY + EK I     N  R+A +AAN             A G N+      +E     L+LN +S  +AAG G+G +HA+++ GT L S+    G  +   C  +PS++  +L A  F  LD++LM  TF                         S+ G  + +  ++ +H  AA +T  N  + GC+V+LPLL+ +V+I+A+V
Sbjct:   13 LAFSPMITLLLLLSYQKAQLIIVVTTSAFAFLLSALCSSLIWLAVPSSLSDNAPLLI-IPSVIFQAAFRCGFVAVYHRVEKAILTSIHNHERHA-AAAN-------------AAGNNDGTM---NESARLRLELNDVSCGLAAGTGFGGMHAIMLYGTLLASEQRSLGTLYQPGCSFMPSLVNSALMAFLFSLLDIVLMLFTFYGMRRRLQNEELHNLNFGWGTLIGDSKEGGLTAIGITVIAHLSAAFSTVPNRADDGCLVALPLLFGIVVITAVV 271          
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: A0A485LS72_9STRA (Aste57867_25071 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS72_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.400e-17
Identity = 65/243 (26.75%), Postives = 114/243 (46.91%), Query Frame = 1
Query:    4 AFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAAQNAWILVTITGVGLQGFGRHVLARVYIKAEKMINEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTALSKHF-GPGAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAASRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYAVVIIS 729
            AF P   L+  +V +R+ LVI+ IT+AFF+LVS+ +A+ LW ++P   ++        + +Q   R+   +VY++ E+ +       +                                   L LN ++SS A+GVG+  + ++++ GT L+    G GAAF+ +CP++P V   +LS  A   +D+ LM   F   R    + +   +  H  +  +   NL E GC  S+PL Y   +++
Sbjct:   14 AFAPVSFLFFTVVAQRAQLVILTITAAFFYLVSLLVAATLWQVIPPLHDSIHATIPVSILIQEVFRYAFFQVYVRCEQAVKRVTTKQNQ----------------------------------LPLNDLTSSFASGVGFALMRSLMMYGTVLAASMTGEGAAFTSTCPQMPLVFASALSTLALTLMDVALMVLAFEGFRKRSLAHIMAVVLLHLGSGLSNMLNLNEVGCKASIPLTYVAAVLA 222          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJA9_ECTSI1.250e-9361.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TG16_9STRA7.580e-2435.48Protein binding protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S0YB71_9STRA9.810e-1930.56Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A1V9ZVS0_9STRA2.620e-1829.11Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A0P1A6Q5_PLAHL4.290e-1829.29Gammasecretase subunit aph n=1 Tax=Plasmopara hals... [more]
A0A484DSN2_BRELC8.030e-1828.87Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
F0WMK2_9STRA1.440e-1728.35Uncharacterized protein AlNc14C158G7692 n=1 Tax=Al... [more]
A0A2D4BUP9_PYTIN2.750e-1728.15Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S2UR59_9STRA2.970e-1731.41Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A485LS72_9STRA4.400e-1726.75Aste57867_25071 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10352contigH-elongata_contig10352:1398..5422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score282.7
Seed ortholog evalue1.7e-73
Seed eggNOG ortholog2880.D8LJA9
EggNOG free text desc.Aph-1 protein
EggNOG OGs2CYZB@1,2S7DU@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons6
Model size1322
Cds size768
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10352.291.1prot_H-elongata_contig10352.291.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10352 1419..4889 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929570.1220825-UTR-H-elongata_contig10352:1397..14181622929570.1220825-UTR-H-elongata_contig10352:1397..1418Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10352 1398..1418 +
1691679074.7280755-UTR-H-elongata_contig10352:1397..14181691679074.7280755-UTR-H-elongata_contig10352:1397..1418Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10352 1398..1418 +
1622929570.2622976-UTR-H-elongata_contig10352:4889..54221622929570.2622976-UTR-H-elongata_contig10352:4889..5422Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10352 4890..5422 +
1691679074.8002863-UTR-H-elongata_contig10352:4889..54221691679074.8002863-UTR-H-elongata_contig10352:4889..5422Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10352 4890..5422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929570.1377823-CDS-H-elongata_contig10352:1418..14771622929570.1377823-CDS-H-elongata_contig10352:1418..1477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10352 1419..1477 +
1691679074.737739-CDS-H-elongata_contig10352:1418..14771691679074.737739-CDS-H-elongata_contig10352:1418..1477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10352 1419..1477 +
1622929570.1699-CDS-H-elongata_contig10352:2688..27551622929570.1699-CDS-H-elongata_contig10352:2688..2755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10352 2689..2755 +
1691679074.750841-CDS-H-elongata_contig10352:2688..27551691679074.750841-CDS-H-elongata_contig10352:2688..2755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10352 2689..2755 +
1622929570.1995738-CDS-H-elongata_contig10352:3025..32811622929570.1995738-CDS-H-elongata_contig10352:3025..3281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10352 3026..3281 +
1691679074.7617586-CDS-H-elongata_contig10352:3025..32811691679074.7617586-CDS-H-elongata_contig10352:3025..3281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10352 3026..3281 +
1622929570.2151854-CDS-H-elongata_contig10352:3738..38641622929570.2151854-CDS-H-elongata_contig10352:3738..3864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10352 3739..3864 +
1691679074.7710943-CDS-H-elongata_contig10352:3738..38641691679074.7710943-CDS-H-elongata_contig10352:3738..3864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10352 3739..3864 +
1622929570.2324045-CDS-H-elongata_contig10352:4323..44511622929570.2324045-CDS-H-elongata_contig10352:4323..4451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10352 4324..4451 +
1691679074.7799134-CDS-H-elongata_contig10352:4323..44511691679074.7799134-CDS-H-elongata_contig10352:4323..4451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10352 4324..4451 +
1622929570.2478068-CDS-H-elongata_contig10352:4757..48891622929570.2478068-CDS-H-elongata_contig10352:4757..4889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10352 4758..4889 +
1691679074.7887723-CDS-H-elongata_contig10352:4757..48891691679074.7887723-CDS-H-elongata_contig10352:4757..4889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10352 4758..4889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10352.291.1

>prot_H-elongata_contig10352.291.1 ID=prot_H-elongata_contig10352.291.1|Name=mRNA_H-elongata_contig10352.291.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp
MLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAAQNAWILVTI
TGVGLQGFGRHVLARVYIKAEKMINEARNADSAANGGPGGRRRTGEGEAM
GGNETVQLDSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTALSKHF
GPGAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAASRSGDASLLW
WSLASHYLAASTTGFNLMEGGCVVSLPLLYAVVIISALVLGYYGPLRAAM
SHLRR*
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mRNA from alignment at H-elongata_contig10352:1398..5422+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10352.291.1 ID=mRNA_H-elongata_contig10352.291.1|Name=mRNA_H-elongata_contig10352.291.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4025bp|location=Sequence derived from alignment at H-elongata_contig10352:1398..5422+ (Himanthalia elongata Himel1 dioecious)
ATTGCCTTCGGTCCACCATTGATGCTCTGGCTTATTTTGGTCGGCCGGAG GTCTGTACTCGTCATCATCGGCATCACCAGGTGTTCCCTTCGACGTCGAT GATGTTAGATCGTTCCCCAAAACAAAAATACCTGAAATAGAAGAGGTAGG ACGTGTATATATATATATATATATATATATATATATATAATATATAATAT ATTGAATTTTTGATATATATTTATAAATCTTGGTCAAACCCTCCGAACAT CCACACCTTCTCTACACCAGGCTCGGGTGAAATCCAGGGGAACAACTATC GTCATGTTCGAGCATGTACATTAAATAGATATCAGCACCAAAATTATGTT GAACCTCGAGACCTCTGAACCCACCCAAACCCTCTGATCATCCTTCCTCG CCCTTACACCGCGGTTTCGTTTTCCTCTCTGAGAGCGGATAAATACATGT ACAGTACTACTGTACATTATTACAATGTTTTATAATAAAAATAAACACTT GGTACGTCAAACGGTCTCGTTCAGACTAATTACACATTCGAACCTGACGA TAGTTGGTACTCTGGAGTGCACCTCTCACGGTGCTAAGAAGCCGTGAATG TTCAAAGGGTTTGAATGAGTTCATTAAAAATAATAATAATAATAGGCCCT GCGTACAGCAACAGCAGCTGGCCTGCGGGGAGAAATTGCACATTGCCCCT ATAGACTTAACACCTTCAACAACTAGTTGCTGATTCACACTTTCAGTGCA TTGTCCTCGCAGCTGAGGCACTCCGATATCCACATTCACGTTTCACCCGC CACCTCGTGGCAAAATATTCATTCCTCTACGCCATCAGACGGTATACCAG CTGGCCTGCGGGGAGAAATTGTAAATTGCCCCTATAGACTTAACACCTTC AACAATTAGTTGCTGATTCACACTTTCAGTGCATTGTCCTCGCAGCTGAG GCACAGCGATATCCACATTCACGTTTCACCCGCCACCTCGTGGCAAAATA TTCATTCCTCTACGCCATCATACGGTATACCTTTCGCTTACCCTTGATCC CCGACCGGTACTTTATAGCTAGTCGAGGGACGCAATTACAGTGTCAGCAT GTAACTATTTTGTGTAAAAATCACCACCCTTCTCTCATATTGACGTGATA CGATCCAAGTTTCGCTGCCCCTCGCGTCGCTGTGCGTGGTTGTTCCTTTA GCACCCCCCATCTCCCTCTCACTTATTTCCACCACCACATTCGCCCCCGT GTCCGGCGTTGCTGCATCGCATCCATGAATGATTGGCGCAGCGCATTCTT TTGGCTGGTGTCTATGGCGTTGGCGTCTCTCCTGTGGACCATAGTCCCCG CAGCACAAGTAAGCTCGCAAAGCTCGCGAACGTCTCATGAAATATATATA TTGGACTGTTCATTACGATAGCAGACCAGTGCCACTGGTTTATCCACGAT CGGTATCGACGTCAAGATACCAGGAAAATATTACTCGGAGCACGACATGC CAACGAAGAGATATGCCTGGGGGTTGCTGGGATCCCGACTGCATGGCTGA GGTACCGCACCCTCTCGTTGCTGCCTAGGCGTCTATCTATCTTTATGCTG ACAGCATCTCGCACGAATATGATTACAGAACGCCTGGATACTGGTGACAA TCACGGGTGTCGGCTTGCAAGGATTCGGTCGCCACGTGCTAGCTAGAGTC TACATTAAGGCAGAGAAAATGATCAACGAAGCTAGGAATGCTGACTCGGC CGCGAACGGTGGCCCTGGCGGTCGACGACGTACCGGGGAAGGCGAGGCGA TGGGCGGAAACGAAACGGTGCAGTTGGACTCGCACGAGCATATTTCCTCC TCGCTCAAGCTGAATGGAATTTCTTCTTCAATAGGTAAAGTGGGAGGGAG ATCATTGTTCGTCTTCGGTATTGTTTACAGCTAGGGCACCGTACGTGAGC GGCATCGAGGATACGCAAGAAGTTGATCGTTCGGAGGCAGCGTCTGCAAG GCGTTTTGCTCCTCCACTTCGCGGGGTTGGTGTATCCCTCCCACGTACAT TCGTATTTTATTGTGACTGGGGCAGCGAGTCAGTTCCTCCTCATTTGATT AGTTTGATGAGGGCGCTCTAACCAGGATTGACACCAGCTAGCCCATCGGG TTACGCAGGTGACTCGCGTACGTAAATATTACCATAAAACCAAGCATAAT GCTCGTCTAAATATCGCGGCCCACTCAGGTCGACGCATCTCGGTGCTCAT TTCAAAGTGTTTTGAGTGATCTAAGTCACATTCCAGCAGTAGCCCCACTC ATCCCGCAAGGTGTTTCTCCGCTGTCCGCAACACGTCTCAGCGGCCGGAG TTGGATGGGGCGCGATCCACGCAGTGATTATTGTGGGTACGGCATTGTCC AAGCACTTCGGCCCGGGGGCAGCCTTTTCGAAGTCCTGCCCTCGAATCCC ATCGGTAATTGTAATATGTAAGAGACAGGCGATTTGCTACAAAGTACACA GTAACACCATCTGGCGTGGGAGGTGATTTCCGTGATGCCGTCTGAGGCCA AAAGATGCGATCCCATGTTGGCGAACGCGATTAGCCTAAAGTTAATTTAA GGCTATATCGTTCTTGAAATATATGTCTCCGGTTGACGGTTATCTCTAAA TTCTACATTGATCTGATATTGGTCGTTCACCGTTACTTACCGTTCTCAGT AACGTTGCTCGAGCTCCTTGAATGTTCAACGCGTTGTTTTTGGTCGGGAA CGCTACTGCGCGGCACCCTTTTGTACCTCAGGTTACATCTCAGCGCGACT TAAATCGCATCAAGTGACTTTCAAATCGCCCATGCCCAGGCTTCCAGAAA CAAGTGCTATGTGCGACCCAGCGTGTTATCTTGCCAACGTGCCGTTGAAC CATTCGCCGACGCCTCGCGTACTCAGCTCTTAGCGCGCAGGCATTTTTCT GGTTAGACCTGCTGCTCATGGCCGCCACCTTTGCCGCCTCGCGATCGGGA GACGCGTCGCTCTTGTGGTGGTCGCTCGCCTCCCACTACTTAGCCGCATC CACGGTAAGGCTCCAGCTTCTATCACCCAAAAGCGGCTTCTTGATTCGAC CACGTATACTGGTATATATTTTCCTACGAAAATTTCTCCTGGTAATCTTG ATCTTGTAACATTCCTAATTGCCAGCTAATTCGTACGGTATCCATTATGT GTCCTTTATTTTTCTCCATATAAAGTCTAGCATGGAGTTGTTAGAAAACA AAAGAAGATAAACATGGTATTGCGAAAGGACTAGTGCGAACGACGTTCGG AAACATATTAACGGTCAACACCTGCCTCCCCACCCCCGTAACGTGGTTTT TCTTTCGCAGACGGGTTTCAATCTGATGGAAGGCGGTTGTGTAGTTTCGT TGCCTTTGCTTTACGCCGTTGTGATTATATCGGCCCTCGTGCTTGGTTAT TATGGCCCGCTCCGAGCTGCCATGTCGCACCTCAGGCGATGAAGTTCATT CAGCTGGATTTTTCGCCAGATTTACCCAGGAGTTTCCGGAGCTGGCAATA GATACTAATTGTTGATTGATCTTTGCGTGGATCTAGTAAAACATATATTT TTTCCGGTCATGTAATTTATTGTCGAGTTCTTATGTTCGTTTTTCCTTCT CCATCTTTCCTTGGCTGCTGATTACGTATCAAGTGTGGGACAGGACCAGA CGCTTGGGTGCACGAATTCGATTCATTTCAAAGTAAAATAATGGTCTTAT TTCAAATAACCCAGGGGACCGTGGAACACGAAGCGAAGTATTGTAAAATG AGTGAGGAATATAGCTGGTCATTGCTCAACCATTTCCGAACATTGTAGCA GATGCAGCGACCTGATCAAAATATATTTCTCGTAGAACCACACCGATATC CTGGGAACCTTCATTCTATGGCAAGTTACAGGTGATCCGCCTGGGGCCAA TTTGTAGATTTTGAAACGAAAGCTCTTCAGGCCATAATCGATTTTTTTCT TATTTATGCATTGGACAAAGCCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig10352:1398..5422+

>mRNA_H-elongata_contig10352.291.1 ID=mRNA_H-elongata_contig10352.291.1|Name=mRNA_H-elongata_contig10352.291.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig10352:1398..5422+ (Himanthalia elongata Himel1 dioecious)
ATGCTCTGGCTTATTTTGGTCGGCCGGAGGTCTGTACTCGTCATCATCGG
CATCACCAGATGCTCTGGCTTATTTTGGTCGGCCGGAGGTCTGTACTCGT
CATCATCGGCATCACCAGCGCATTCTTTTGGCTGGTGTCTATGGCGTTGG
CGTCTCTCCTGTGGACCATAGTCCCCGCAGCACAACGCATTCTTTTGGCT
GGTGTCTATGGCGTTGGCGTCTCTCCTGTGGACCATAGTCCCCGCAGCAC
AAAACGCCTGGATACTGGTGACAATCACGGGTGTCGGCTTGCAAGGATTC
GGTCGCCACGTGCTAGCTAGAGTCTACATTAAGGCAGAGAAAATGATCAA
CGAAGCTAGGAATGCTGACTCGGCCGCGAACGGTGGCCCTGGCGGTCGAC
GACGTACCGGGGAAGGCGAGGCGATGGGCGGAAACGAAACGGTGCAGTTG
GACTCGCACGAGCATATTTCCTCCTCGCTCAAGCTGAATGGAATTTCTTC
TTCAATAGAACGCCTGGATACTGGTGACAATCACGGGTGTCGGCTTGCAA
GGATTCGGTCGCCACGTGCTAGCTAGAGTCTACATTAAGGCAGAGAAAAT
GATCAACGAAGCTAGGAATGCTGACTCGGCCGCGAACGGTGGCCCTGGCG
GTCGACGACGTACCGGGGAAGGCGAGGCGATGGGCGGAAACGAAACGGTG
CAGTTGGACTCGCACGAGCATATTTCCTCCTCGCTCAAGCTGAATGGAAT
TTCTTCTTCAATAGCGGCCGGAGTTGGATGGGGCGCGATCCACGCAGTGA
TTATTGTGGGTACGGCATTGTCCAAGCACTTCGGCCCGGGGGCAGCCTTT
TCGAAGTCCTGCCCTCGAATCCCATCGGTAATTGTAATATCGGCCGGAGT
TGGATGGGGCGCGATCCACGCAGTGATTATTGTGGGTACGGCATTGTCCA
AGCACTTCGGCCCGGGGGCAGCCTTTTCGAAGTCCTGCCCTCGAATCCCA
TCGGTAATTGTAATATCTCTTAGCGCGCAGGCATTTTTCTGGTTAGACCT
GCTGCTCATGGCCGCCACCTTTGCCGCCTCGCGATCGGGAGACGCGTCGC
TCTTGTGGTGGTCGCTCGCCTCCCACTACTTAGCCGCATCCACGCTCTTA
GCGCGCAGGCATTTTTCTGGTTAGACCTGCTGCTCATGGCCGCCACCTTT
GCCGCCTCGCGATCGGGAGACGCGTCGCTCTTGTGGTGGTCGCTCGCCTC
CCACTACTTAGCCGCATCCACGACGGGTTTCAATCTGATGGAAGGCGGTT
GTGTAGTTTCGTTGCCTTTGCTTTACGCCGTTGTGATTATATCGGCCCTC
GTGCTTGGTTATTATGGCCCGCTCCGAGCTGCCATGTCGCACCTCAGGCG
ATGAACGGGTTTCAATCTGATGGAAGGCGGTTGTGTAGTTTCGTTGCCTT
TGCTTTACGCCGTTGTGATTATATCGGCCCTCGTGCTTGGTTATTATGGC
CCGCTCCGAGCTGCCATGTCGCACCTCAGGCGATGA
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