mRNA_H-elongata_contig10352.291.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: D8LJA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJA9_ECTSI) HSP 1 Score: 293 bits (749), Expect = 1.250e-93 Identity = 167/273 (61.17%), Postives = 198/273 (72.53%), Query Frame = 1 Query: 1 IAFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAAQNAWILVTITGVGLQGFGRHVLARVYIKAEKMINEAR-NADSAAN---------GGPGGRRRTGEGEAMGGNETVQL-DSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTALSKHFGPGAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAASRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYAVVIISALVLGYYGPLRAAMSHLRR 786 IAFGP +MLW+++VG+R LVIIG+ AFFWL SMA AS+LWTIVPAAQ+AW+L ITGV L GFGR LA+VY+K E +INEA +A A+N G G G GE G +T + D E S L+LNG+SSSIAAGVGWG IHAVI+VGTALSKH GPGAAFS SCP +PSVIV +LSAQAF LDLLLMAA FAA+RSGDA L+ +S H+ AA TTGFN +EGGC SLPLLY VV ++A+ L Y PL++AM LRR Sbjct: 12 IAFGPSIMLWVVVVGKRPALVIIGLVGAFFWLASMAAASVLWTIVPAAQDAWLLSMITGVVLHGFGRLALAKVYVKTEAVINEAAAHAAPASNAHGSSGRYGGALGAEGSGGVGEGRGERKTGDVPDQPEESSGLLRLNGVSSSIAAGVGWGLIHAVIMVGTALSKHMGPGAAFSPSCPHVPSVIVSALSAQAFVVLDLLLMAAAFAAARSGDAGLMSFSFGLHFAAALTTGFNFIEGGCTASLPLLYGVVALAAIALTRYRPLKSAMIRLRR 284
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: W7TG16_9STRA (Protein binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG16_9STRA) HSP 1 Score: 109 bits (272), Expect = 7.580e-24 Identity = 88/248 (35.48%), Postives = 125/248 (50.40%), Query Frame = 1 Query: 1 IAFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIV-PAAQNAWILVTITGVGLQGFGRHVLARVYIKAEKMINEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTAL-SKHFGPGAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAASRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYAVVIISALV 738 I F P +++++V RR LVII I+ AF +LV++ L+S LW + P Q A I+V + GV Q R VL R+Y + E +I A H + LN I+SS+AAG G+G +HAV+I G+ L S + PG F+ SC R P V+V++L A AF +DL MA TF R + H A+ T N +E GC +SLPL+Y V++ + LV Sbjct: 13 IVFSPISCVFILVVTRRPELVIIAISGAFAYLVALLLSSALWAMFGPVKQTAAIMVVL-GVLCQVVMRAVLYRLYHRTEILIKSA----------------------------------NHPVLHMPLNDITSSLAAGTGYGLMHAVMIFGSVLASGNSDPGVLFAPSCTRTPLVVVLALLALAFTMMDLSFMALTFLYLRRRKCFRMGVIFLMHSAASGLTILNDVENGCTMSLPLVYVVMVATVLV 225
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: A0A7S0YB71_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0YB71_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 9.810e-19 Identity = 99/324 (30.56%), Postives = 147/324 (45.37%), Query Frame = 1 Query: 1 IAFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAA---QNAWILVTITGVGLQGFGRHVLARVYIKAEKMINEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSS---LKLNGISSSIAAGVGWGAIHAVIIVGTAL-SKHFGPGAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAA------------------------------SRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYAVVIISAL-----VLGYYGPLRAAMSHLRR*SSFSWIFRQIYPGVSGAGN 846 I F P + + +V + L+I+ IT+AFF+L++ + AS+ W IV W + + GV Q R + A Y K E +I EA A S E + G+E DS I ++ L LN ++ +AAGVG+G +HA+++ G+ L S+ F G + SCP++PS+ V SL+ FF+LD+ M TF +R G + L L +H LAA T FN + GCV S+ LL V +I A + Y PL + L +SFS+ + GV GA Sbjct: 37 IGFAPFICFFFQIVFPKPQLLIVSITAAFFYLLAASAASVCWYIVDPVIGLGGPWAAI-VPGVFFQFIFRALFAHSYFKVETVI-EASIAKS-------------EEDREDGDENEGEDSGAGIQAAKNRLALNDVACGLAAGVGFGGMHAILLFGSLLASETFDSGVLYQPSCPKVPSLTVSSLNTFCFFFLDVFWMLFTFFGIRRRFLFPRGGGALSDINPLSRPFGSYFGNTRMGGNNALLVCLITHVLAAGFTTFNAFQFGCVFSMTLLPLVTLIVAYLYWSGISNIYLPLAHSNVRLSLPASFSY-GSHVAEGVLGANQ 344
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: A0A1V9ZVS0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVS0_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 2.620e-18 Identity = 69/237 (29.11%), Postives = 114/237 (48.10%), Query Frame = 1 Query: 4 AFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAAQNAWILVTITGVGLQGFGRHVLARVYIKAEKMINEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTALSKHF-GPGAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAASRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLY 711 AFGP L+L++V +R+ LVI+ ITSAFF+L+ + +A+ +W+I+P Q + + LQ R+V VY++ E + + + L LN +++S A+GVG+ + A+++ GT L+ G GAAF+++CP IP V +LS A +D+ LM F R + + + H + + NL E GC S+PL + Sbjct: 14 AFGPIASLFLLVVAQRAQLVIVSITSAFFYLLGLLVAATIWSIIPPLQTSIQATIPIAIVLQEIFRYVFFVVYVRCELAVKKVTTKQNQ----------------------------------LPLNDLTTSFASGVGFALMRALMLYGTVLAASVQGEGAAFTETCPSIPLVFSSALSTLALTLMDVALMVVAFEGFRKKSIAHIAAVVLIHLGSGLSNLLNLNEVGCKASIPLTF 216
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: A0A0P1A6Q5_PLAHL (Gammasecretase subunit aph n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6Q5_PLAHL) HSP 1 Score: 93.6 bits (231), Expect = 4.290e-18 Identity = 70/239 (29.29%), Postives = 111/239 (46.44%), Query Frame = 1 Query: 1 IAFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAAQNAWILVTITGVGLQGFGRHVLARVYIKAEKMINEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTALSKHFGP-GAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAASRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYA 714 I FGP L+ +V +R+ LVI+ +++AF WLV++ + + LW ++P + + GV +Q R + +Y + EK + V SH+ L LN I+SS+A GVG+ A+HA+++ G+ + G GAAFS SC IP + +LS A LD+ LM F R ++ H A + N+ GC +S+P+ YA Sbjct: 19 IGFGPLAALFFFVVAKRAQLVILALSAAFVWLVAILVTATLWHLIPPLKTSLSATVPVGVVVQEAFRMLFFYLYTRTEKAVKR-----------------------------VTTSSHQ-----LPLNDITSSLAGGVGFSAMHALLMFGSLVGSSTGSRGAAFSSSCESIPLIFSAALSTLALTALDVALMVVAFDGYRKRSVLIITVVFGIHMGVALSALANMDTNGCYISIPVHYA 223
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: A0A484DSN2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSN2_BRELC) HSP 1 Score: 92.8 bits (229), Expect = 8.030e-18 Identity = 69/239 (28.87%), Postives = 112/239 (46.86%), Query Frame = 1 Query: 1 IAFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAAQNAWILVTITGVGLQGFGRHVLARVYIKAEKMINEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTALSKHFG-PGAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAASRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYA 714 + FGP ++ ++ +R+ LVII ++ AF WL+++ + + LW I+PA + + GV +Q R + +Y + E + V SH+ L LN ++SS+A GVG+ +HA+++ G+ + G GAAFS SCP IP V +LS A LD+ LM F R A ++ + H A + N+ GC +S+P+ YA Sbjct: 19 VGFGPLAAVFFTIIAKRAQLVIISLSGAFVWLIAILVTATLWQIIPALKTSLSATVPVGVVVQEAFRVLFFYLYTRTELAVKR-----------------------------VTTSSHQ-----LPLNDVTSSLAGGVGFSLMHALLMFGSLMGSSTGLRGAAFSNSCPAIPLVFSAALSTLALTALDVSLMVLAFDGYRKRSALIVSAVIIIHMGIALSALANMDTNGCYISIPVHYA 223
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: F0WMK2_9STRA (Uncharacterized protein AlNc14C158G7692 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMK2_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.440e-17 Identity = 72/254 (28.35%), Postives = 123/254 (48.43%), Query Frame = 1 Query: 4 AFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAAQN---AWILVTITGVGLQGFGRHVLARVYIKAEKMINEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTALSKHFG-PGAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAASRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYAVVIISALVLGYYG 753 A+GP L+ IL+G+R+ L+II +TSAF WL+S+ +++ +W I+P ++ A I VTI +Q GR+ ++Y + I + V H+ L LN +SS+A+GVG+ +H++++ GT L G GAAF C +P V ++++ A D+ LM FA RS + S++ L H + N GCV+S+P+ Y +++ + ++ Sbjct: 20 AYGPIATLFFILIGKRAQLIIIALTSAFIWLISVLISATIWQIIPVLKSSAEATICVTIL---IQEIGRYTYFQLYSRGVVAIQK-----------------------------VTTTKHQ-----LPLNDFTSSLASGVGYSLMHSLMVYGTVLGSSTGFRGAAFRDYC-TLPVVFTGAITSLALSISDVALMVMAFAGYRSRNWSIICMVLVLHLGIGLSALANFKSNGCVISIPIHYGGAVLACVGAKFFA 235
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: A0A2D4BUP9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUP9_PYTIN) HSP 1 Score: 91.3 bits (225), Expect = 2.750e-17 Identity = 67/238 (28.15%), Postives = 115/238 (48.32%), Query Frame = 1 Query: 4 AFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAAQNAWILVTITGVGLQGFGRHVLARVYIKAEKMINEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTALSKHFGP-GAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAASRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYA 714 AFGP L+ +++ +R+ LVI+ ++ AF WL+S+ + + +W I+P + + V LQ R++ +Y + E+ + + A +H+ L LN I+SS+A GVG+ +H++++ G+ ++ G GAAFS SC IP ++ +LS A +D+ LM F R +A L+ H A + N GC+VS+P+ YA Sbjct: 20 AFGPLASLFFVVIAKRAQLVILALSGAFLWLISILVTATIWRIIPPLKTSLEATIPLSVVLQEVFRYLFFVMYTRTEQAVQKVTTA-----------------------------THQ-----LPLNDITSSLAGGVGFSLMHSLMMYGSVVASSTGSRGAAFSSSCESIPLILSGALSTLALTVMDVALMVIAFQGYRKMNAMLIGLVALIHLGVALSALANKSTNGCMVSIPIHYA 223
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: A0A7S2UR59_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UR59_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 2.970e-17 Identity = 87/277 (31.41%), Postives = 139/277 (50.18%), Query Frame = 1 Query: 1 IAFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAA--QNAWILVTITGVGLQGFGRHVLARVYIKAEKMI-----NEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTAL-SKHFGPGAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAA-----------------------SRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYAVVIISALV 738 +AF P + L L+L +++ L+I+ TSAF +L+S +SL+W VP++ NA +L+ I V Q R VY + EK I N R+A +AAN A G N+ +E L+LN +S +AAG G+G +HA+++ GT L S+ G + C +PS++ +L A F LD++LM TF S+ G + + ++ +H AA +T N + GC+V+LPLL+ +V+I+A+V Sbjct: 13 LAFSPMITLLLLLSYQKAQLIIVVTTSAFAFLLSALCSSLIWLAVPSSLSDNAPLLI-IPSVIFQAAFRCGFVAVYHRVEKAILTSIHNHERHA-AAAN-------------AAGNNDGTM---NESARLRLELNDVSCGLAAGTGFGGMHAIMLYGTLLASEQRSLGTLYQPGCSFMPSLVNSALMAFLFSLLDIVLMLFTFYGMRRRLQNEELHNLNFGWGTLIGDSKEGGLTAIGITVIAHLSAAFSTVPNRADDGCLVALPLLFGIVVITAVV 271
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Match: A0A485LS72_9STRA (Aste57867_25071 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS72_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 4.400e-17 Identity = 65/243 (26.75%), Postives = 114/243 (46.91%), Query Frame = 1 Query: 4 AFGPPLMLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAAQNAWILVTITGVGLQGFGRHVLARVYIKAEKMINEARNADSAANGGPGGRRRTGEGEAMGGNETVQLDSHEHISSSLKLNGISSSIAAGVGWGAIHAVIIVGTALSKHF-GPGAAFSKSCPRIPSVIVISLSAQAFFWLDLLLMAATFAASRSGDASLLWWSLASHYLAASTTGFNLMEGGCVVSLPLLYAVVIIS 729 AF P L+ +V +R+ LVI+ IT+AFF+LVS+ +A+ LW ++P ++ + +Q R+ +VY++ E+ + + L LN ++SS A+GVG+ + ++++ GT L+ G GAAF+ +CP++P V +LS A +D+ LM F R + + + H + + NL E GC S+PL Y +++ Sbjct: 14 AFAPVSFLFFTVVAQRAQLVILTITAAFFYLVSLLVAATLWQVIPPLHDSIHATIPVSILIQEVFRYAFFQVYVRCEQAVKRVTTKQNQ----------------------------------LPLNDLTSSFASGVGFALMRSLMMYGTVLAASMTGEGAAFTSTCPQMPLVFASALSTLALTLMDVALMVLAFEGFRKRSLAHIMAVVLLHLGSGLSNMLNLNEVGCKASIPLTYVAAVLA 222 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10352.291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10352.291.1 >prot_H-elongata_contig10352.291.1 ID=prot_H-elongata_contig10352.291.1|Name=mRNA_H-elongata_contig10352.291.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp MLWLILVGRRSVLVIIGITSAFFWLVSMALASLLWTIVPAAQNAWILVTIback to top mRNA from alignment at H-elongata_contig10352:1398..5422+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10352.291.1 ID=mRNA_H-elongata_contig10352.291.1|Name=mRNA_H-elongata_contig10352.291.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4025bp|location=Sequence derived from alignment at H-elongata_contig10352:1398..5422+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10352:1398..5422+ >mRNA_H-elongata_contig10352.291.1 ID=mRNA_H-elongata_contig10352.291.1|Name=mRNA_H-elongata_contig10352.291.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig10352:1398..5422+ (Himanthalia elongata Himel1 dioecious)back to top |