mRNA_H-elongata_contig10338.281.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10338.281.1
Unique NamemRNA_H-elongata_contig10338.281.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10338.281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10338contigH-elongata_contig10338:405..4575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size2912
Cds size1602
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10338.281.1prot_H-elongata_contig10338.281.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10338 1707..4567 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929568.9478433-UTR-H-elongata_contig10338:404..17061622929568.9478433-UTR-H-elongata_contig10338:404..1706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10338 405..1706 -
1691679074.184925-UTR-H-elongata_contig10338:404..17061691679074.184925-UTR-H-elongata_contig10338:404..1706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10338 405..1706 -
1622929569.0519125-UTR-H-elongata_contig10338:4567..45751622929569.0519125-UTR-H-elongata_contig10338:4567..4575Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10338 4568..4575 -
1691679074.239039-UTR-H-elongata_contig10338:4567..45751691679074.239039-UTR-H-elongata_contig10338:4567..4575Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10338 4568..4575 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929568.9746544-CDS-H-elongata_contig10338:1706..26251622929568.9746544-CDS-H-elongata_contig10338:1706..2625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10338 1707..2625 -
1691679074.1930332-CDS-H-elongata_contig10338:1706..26251691679074.1930332-CDS-H-elongata_contig10338:1706..2625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10338 1707..2625 -
1622929568.9927626-CDS-H-elongata_contig10338:2839..31741622929568.9927626-CDS-H-elongata_contig10338:2839..3174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10338 2840..3174 -
1691679074.2007244-CDS-H-elongata_contig10338:2839..31741691679074.2007244-CDS-H-elongata_contig10338:2839..3174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10338 2840..3174 -
1622929569.010487-CDS-H-elongata_contig10338:3339..36631622929569.010487-CDS-H-elongata_contig10338:3339..3663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10338 3340..3663 -
1691679074.2095108-CDS-H-elongata_contig10338:3339..36631691679074.2095108-CDS-H-elongata_contig10338:3339..3663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10338 3340..3663 -
1622929569.0286143-CDS-H-elongata_contig10338:4543..45671622929569.0286143-CDS-H-elongata_contig10338:4543..4567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10338 4544..4567 -
1691679074.2285507-CDS-H-elongata_contig10338:4543..45671691679074.2285507-CDS-H-elongata_contig10338:4543..4567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10338 4544..4567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10338.281.1

>prot_H-elongata_contig10338.281.1 ID=prot_H-elongata_contig10338.281.1|Name=mRNA_H-elongata_contig10338.281.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=534bp
MGRAFPEEPYMHTENKTPTNSFEFDFSSSKSGPLPASENSPALPSENTPL
TSAPGGEASAHLSLTRRAILTTPVAGKRGKILSQLSGALGILAPRATRSS
AAAAAATAAAASTASRGLKTIKGSGFTSCQYSSMPPTFRGNRPWLGSHMT
QTAVAGTVAPEEKRPSPLPALNMNASLFRENDYYATSAPPNLGYWSTPSK
EERSVAALVGTNQSQPSFGSTEGNGYTGKLSAFGDENFWNKMLCDSEADK
PPGSSSGDRAGPGSDANGSERHDAFSYFLPSNAPFIDTASGDLQYYSSPS
ITSPEIGFGSAGDSFSGSSDYIGLVLAHPSSGKEGTIRTALAPPLETLPE
MSSTILEEYECGGDRCARGGGSGSGNDYGGGIINGGSSSYMQPVRRWPII
AATIADEGVNHHGDDGADGISGGRKSDVDIMQPSRYRDLCVGATSVANGY
NLSARGRQILPSITPTSPWVENVVEVETKLDEAPGGMNEDLPGRIAPNCN
GVVGSIRGGNTSLGINSFDSNTAVIFEDHLGML*
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mRNA from alignment at H-elongata_contig10338:405..4575-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10338.281.1 ID=mRNA_H-elongata_contig10338.281.1|Name=mRNA_H-elongata_contig10338.281.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4171bp|location=Sequence derived from alignment at H-elongata_contig10338:405..4575- (Himanthalia elongata Himel1 dioecious)
AAAAGGGCATGGGACGAGCATTTCCGGAAGAAGTGCGTTCTTGACACACA
GTTACTGCTTCAGCACAATTTATACAGTTTAAAAGACGAAATGTGTGGAT
CTCACTGTCTCCTTTTTCCACACGTTTTTACTCATTCGACATCACCTGCA
GGCCTTGCATGCGTCACGTATTCTGCGTGTATATCCAAAGGACAGGCAAG
GAAGAGTTGCCACTGGGAGCCGATAGTGATGTGCCGTTCGTGCTTGTCGC
GCACTTATTACAGTTGATTCCTTTGGCGAGTCATTAGGGGGTCGCTTCCA
CGACATTTTGCCTTCGAATAGCACGAACCCTGCCCCTCGACCTAAACTGT
CCATATATGGGGAGCGCTCGCGAGCTTCCAAGTGTCTAGAGCCGGGAGAT
ACAAACCTTAGTCAGTACATCTAATGAAAAGCAAAGCGACTTGAAAACGA
AAGATCCCCCTTCGTTCGGATACATGCTTTTGTGCAAAGTAATGGGTGGA
TATTCGCCGTTTCCTTCGGTCGACCAAGCGCTTGCCTTGGACGGCTCCAG
CAGTCGAATCTCAATTTGTTTACTTGCATCTTGTGTGTTATTCTAGCTGG
CACACCAAACTCGTGTTTTTCTCCTGATATGGAATGACTCTTTTGTCTGC
GCTGCATTTGTTGTAATGAAATTGAGCGCTTACAACATCTGGAGGCGTAT
ATATAGAGAGAGAGCCCCCCGATAGTTGTTCAGTTGTTTAGTTATTTATA
TATAGTATATCCAATATAATATAATATACAATTTTACGTACTATTCTGAA
CTTTTATCCCTATCCATGTTTCCCTTAGTAAGCGAGGGCGCGAATGACAC
ATTGACCCTTTCGTCCCTCTCTTTACCCCTGGGTGATTCGTTCGTTATTG
GCCACTCCGCAGCCGTACATGCACACTGAAAATAAGACACCAACCAACTC
TTTCGAGTTCGACTTCTCCAGTTCCAAGTCGGGGCCCTTACCCGCCAGCG
AAAATAGCCCAGCGCTCCCGAGCGAAAACACACCGTTAACATCGGCGCCT
GGGGGAGAGGCTTCTGCCCATTTGTCCTTGACTCGACGCGCCATCCTCAC
GACCCCCGTGGCTGGAAAGAGGGGAAAGATTCTTTCGCAACTCAGTGGCG
CGCTCGGAATCTTGGCGCCGCGGGCAACGAGGTCCAGCGCCGCCGCTGCC
GCTGCCACCGCCGCTGCCGCATCTACCGCTTCTAGAGCTATAGTTAGCGG
CAGTAGTAGCGACGGTGACAGCGACATCGGTCAGAGAAGCAACGGTAACA
GTGAAGCGGATCGCGACAAGAAACGTCAGAGAATCGAACGCCCTGCCTCA
GCCGACATCGTTGAGTCAGTTCCGGCCTTCCTGGAAGAGGGTGTGCGGGA
GGGACTTAAGACCATTAAAGGGTCAGGCTTCACGTCGTGTCAGTATAGTT
CAATGCCTCCAACGTTTCGCGGGAATAGACCGTGGCTGGGTAGTCACATG
ACCCAGACGGCGGTCGCGGGGACGGTGGCACCCGAAGAGAAGAGGCCATC
CCCGCTCCCTGCTCTGAATATGAACGCCTCGCTGTTCAGGGAAAACGATT
ACTATGCCACAAGTGCACCTCCAAACCTGGGGTACTGGTCGACGCCGAGC
AAGGAGGAGCGCAGTGTCGCCGCATTGGTCGGTACTAACCAAAGCCAACC
TTCATTTGGGAGCACCGAAGGCAACGGTTACACCGGGTAAGGTTAGGTTT
TATTCAGCTCCAAGACTGCGATTAAATCGTCCGGAAGCGCAGATGTATTT
TCACGTGTCTAGCAGCGCCGTAAATGCAACAACGGCTTCATACAACGCAA
AAACAGTGCTCATGCCACATCTTAAATGTATCTACTTCCCCCACAACCAC
CTCATCGTCTCCACCCCGATCTCCCTCTTGCAACATCCTTATCGCGACAG
CAAGTTGTCGGCCTTCGGCGACGAGAACTTCTGGAACAAGATGCTTTGCG
ATAGCGAAGCCGACAAACCACCTGGATCGTCCTCCGGCGACCGCGCCGGT
CCGGGTAGTGACGCCAATGGGTCTGAGCGCCACGACGCGTTCAGCTATTT
TCTCCCCTCCAACGCACCATTCATCGACACCGCGAGTGGAGACCTCCAGT
ACTACTCATCACCCTCAATAACTTCACCCGAAATCGGTTTTGGCAGCGCG
GGTGATTCTTTCTCTGGGAGCAGTGACTACATCGGCTTAGTCCTTGCACA
CCCTTCTTCAGGCAAAGAGGGAACAATACGCACCGCACTTGCGCCTCCAC
TCGAGACGCTACCAGAAATGAGTTCGACAATTTTAGAGGAATATGAATGC
GGTGGTGATAGGTGCGCTCGGGGAGGTGGTAGTGGGAGCGGGAACGACTA
CGGCGGTGGGATCATAAACGGTGGAAGCTCTTCCTATATGCAGCCAGTTC
GACGGTGGCCCATCATCGCTGCCACTATCGCAGATGAAGGTGTTAATCAC
CATGGAGATGACGGTGCTGACGGGATCAGTGGAGGTAGAAAAAGTGACGT
GGATATAATGCAGCCGTCCCGGTATCGTGACCTCTGCGTCGGGGCGACGA
GCGTAGCGAACGGATACAACCTATCGGCCAGAGGCCGACAGATCTTACCC
TCGATTACTCCAACGTCACCATGGGTGGAGAACGTCGTCGAAGTTGAGAC
AAAGCTGGATGAGGCTCCAGGCGGAATGAACGAAGATCTTCCTGGAAGAA
TTGCGCCCAATTGCAACGGCGTGGTTGGGAGTATCAGAGGAGGCAACACA
TCGCTTGGCATCAACAGTTTTGATTCCAACACCGCAGTTATCTTCGAGGA
CCACCTGGGGATGCTCTAAAGTTGTGGTGCAGGGGATGAAGAAACGATCC
CTGGTGTGTGGCGATGATTAGGTGTTGGTGAACGTACCGCGTAGCAGTGG
TTTCCGAACAACGGGCACAATGGTCACAGCAAGCTACATCAGCAAGCACG
TCCTTTTTACGGCCAACCGTGTGGTTTTGTTAAATCGGCACAGTTGATGA
CCCCACCTCACCACTTCATACTGGGGGAACATTGAATGGAAGAAGAGCGT
GAGGGTTAATGTCTTTTATTTCGTCTTCTTCCTTTCCTTGCTTATATTGT
GTCGCGTTTCTGGCACTGAAATGTGATCTCGACGACAAGGATCGAACAAA
CAGTTGTAGAGACTCGAAAAATCACGATGCTTCAATGCCGGAGCCTGGGC
CACCGACATCTTGATCGATATCTTCATTGTAGAATTTTACGCAAGTATTG
CGTAGAGGTTACACAACATATTAGCATGCGCCTGGAGGGAAGATATTTTC
TGCCTTTCTCTATCTCTTTGTACTCTTTTTAATACTTTTTTTAGCGTCCT
ACCTGGTACGGTTTTTTAAGAACGAGGGTTCTTAACATATGTTTTTAACT
GTTAGGTATGAAGGGCGTACGTATGTTCGCGGCGTTATGGCATTTGCTGT
GCCTGTGCTAAGCGTCAAATTTCAGGAAGTTGAGCTGTATATGATACTTG
TTGAGTTTTTTCCCTTGGCGAAAGACTAGCCGTTCCAGGTCATCTAAAAG
CTCTAATATGTTATTGATCAGAAGCGGAGTTGCTCGTTTTCCGTTGGGGG
TAAGCACGGTTTACGTGTTGATTCATCGCGTTTGAGATATGTTTACCCTA
TCGCTCAAATGGAAGCTCATTTTATGACGGTGGCTAGTCGGTTCACGCGC
CGATTACTTGGTTGTGCAGCGCGCTGTCTTTCCCTCGTTTGTTCTGACTC
TGGATACTATTCCATACAGTACTTCAGTACGTACGAAACCCGAATAGTAC
GTAGTAGTTAAAATAATGGCATGGACGTTTTTACTTAGTCTACTACTTCT
TCTTTTTTTCTCACTTTATTTAGCTCCAGATTTATGAATAGATCGAGAAA
GGGAAAGGGATAGAGCTTATTGCAGTGCAAACTTTCTGTCAGAGGAAATG
TTCTGCTCGGATTTATGCGAGCTATACGGGGAACGGCCCTGGACAACGCT
TTGAACACATCCTCTAACTTTTTACGCGAGTAGATAACTGAGGAAGGAAG
CGGTCGAGATGGCATCTTGTGTCTTTGGAAGATTTGTATGCGGCCCATAA
CGCGCTTGTATTTTGTTACGA
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Coding sequence (CDS) from alignment at H-elongata_contig10338:405..4575-

>mRNA_H-elongata_contig10338.281.1 ID=mRNA_H-elongata_contig10338.281.1|Name=mRNA_H-elongata_contig10338.281.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3204bp|location=Sequence derived from alignment at H-elongata_contig10338:405..4575- (Himanthalia elongata Himel1 dioecious)
ATGGGACGAGCATTTCCGGAAGAAATGGGACGAGCATTTCCGGAAGAACC
GTACATGCACACTGAAAATAAGACACCAACCAACTCTTTCGAGTTCGACT
TCTCCAGTTCCAAGTCGGGGCCCTTACCCGCCAGCGAAAATAGCCCAGCG
CTCCCGAGCGAAAACACACCGTTAACATCGGCGCCTGGGGGAGAGGCTTC
TGCCCATTTGTCCTTGACTCGACGCGCCATCCTCACGACCCCCGTGGCTG
GAAAGAGGGGAAAGATTCTTTCGCAACTCAGTGGCGCGCTCGGAATCTTG
GCGCCGCGGGCAACGAGGTCCAGCGCCGCCGCTGCCGCTGCCACCGCCGC
TGCCGCATCTACCGCTTCTAGACCGTACATGCACACTGAAAATAAGACAC
CAACCAACTCTTTCGAGTTCGACTTCTCCAGTTCCAAGTCGGGGCCCTTA
CCCGCCAGCGAAAATAGCCCAGCGCTCCCGAGCGAAAACACACCGTTAAC
ATCGGCGCCTGGGGGAGAGGCTTCTGCCCATTTGTCCTTGACTCGACGCG
CCATCCTCACGACCCCCGTGGCTGGAAAGAGGGGAAAGATTCTTTCGCAA
CTCAGTGGCGCGCTCGGAATCTTGGCGCCGCGGGCAACGAGGTCCAGCGC
CGCCGCTGCCGCTGCCACCGCCGCTGCCGCATCTACCGCTTCTAGAGGAC
TTAAGACCATTAAAGGGTCAGGCTTCACGTCGTGTCAGTATAGTTCAATG
CCTCCAACGTTTCGCGGGAATAGACCGTGGCTGGGTAGTCACATGACCCA
GACGGCGGTCGCGGGGACGGTGGCACCCGAAGAGAAGAGGCCATCCCCGC
TCCCTGCTCTGAATATGAACGCCTCGCTGTTCAGGGAAAACGATTACTAT
GCCACAAGTGCACCTCCAAACCTGGGGTACTGGTCGACGCCGAGCAAGGA
GGAGCGCAGTGTCGCCGCATTGGTCGGTACTAACCAAAGCCAACCTTCAT
TTGGGAGCACCGAAGGCAACGGTTACACCGGGGACTTAAGACCATTAAAG
GGTCAGGCTTCACGTCGTGTCAGTATAGTTCAATGCCTCCAACGTTTCGC
GGGAATAGACCGTGGCTGGGTAGTCACATGACCCAGACGGCGGTCGCGGG
GACGGTGGCACCCGAAGAGAAGAGGCCATCCCCGCTCCCTGCTCTGAATA
TGAACGCCTCGCTGTTCAGGGAAAACGATTACTATGCCACAAGTGCACCT
CCAAACCTGGGGTACTGGTCGACGCCGAGCAAGGAGGAGCGCAGTGTCGC
CGCATTGGTCGGTACTAACCAAAGCCAACCTTCATTTGGGAGCACCGAAG
GCAACGGTTACACCGGCAAGTTGTCGGCCTTCGGCGACGAGAACTTCTGG
AACAAGATGCTTTGCGATAGCGAAGCCGACAAACCACCTGGATCGTCCTC
CGGCGACCGCGCCGGTCCGGGTAGTGACGCCAATGGGTCTGAGCGCCACG
ACGCGTTCAGCTATTTTCTCCCCTCCAACGCACCATTCATCGACACCGCG
AGTGGAGACCTCCAGTACTACTCATCACCCTCAATAACTTCACCCGAAAT
CGGTTTTGGCAGCGCGGGTGATTCTTTCTCTGGGAGCAGTGACTACATCG
GCTTAGTCCTTGCACACCCTTCTTCAGGCAAAGAGGGAACAATACGCACC
GCACTTGCGCCTCCACTCGAGACGCTACCAGAAATGAGTTCGACAATTTT
AGAGGAATATGAATGCGGTGGTGATAGGTGCGCTCGGGGAGGTGGTAGTG
GGAGCGGGAACGACTACGGCGGTGGGATCATAAACGGTGGAAGCTCTTCC
TATATGCAGCCAGTTCGACGGTGGCCCATCATCGCTGCCACTATCGCAGA
TGAAGGTGTTAATCACCATGGAGATGACGGTGCTGACGGGATCAGTGGAG
GTAGAAAAAGTGACGTGGATATAATGCAGCCGTCCCGGTATCGTGACCTC
TGCGTCGGGGCGACGAGCGTAGCGAACGGATACAACCTATCGGCCAGAGG
CCGACAGATCTTACCCTCGATTACTCCAACGTCACCATGGGTGGAGAACG
TCGTCGAAGTTGAGACAAAGCTGGATGAGGCTCCAGGCGGAATGAACGAA
GATCTTCCTGGAAGAATTGCGCCCAATTGCAACGGCGTGGTTGGGAGTAT
CAGAGGAGGCAACACATCGCTTGGCATCAACAGTTTTGATTCCAACACCG
CAGTTATCTTCGAGGACCACCTGGGGATGCTCTAACAAGTTGTCGGCCTT
CGGCGACGAGAACTTCTGGAACAAGATGCTTTGCGATAGCGAAGCCGACA
AACCACCTGGATCGTCCTCCGGCGACCGCGCCGGTCCGGGTAGTGACGCC
AATGGGTCTGAGCGCCACGACGCGTTCAGCTATTTTCTCCCCTCCAACGC
ACCATTCATCGACACCGCGAGTGGAGACCTCCAGTACTACTCATCACCCT
CAATAACTTCACCCGAAATCGGTTTTGGCAGCGCGGGTGATTCTTTCTCT
GGGAGCAGTGACTACATCGGCTTAGTCCTTGCACACCCTTCTTCAGGCAA
AGAGGGAACAATACGCACCGCACTTGCGCCTCCACTCGAGACGCTACCAG
AAATGAGTTCGACAATTTTAGAGGAATATGAATGCGGTGGTGATAGGTGC
GCTCGGGGAGGTGGTAGTGGGAGCGGGAACGACTACGGCGGTGGGATCAT
AAACGGTGGAAGCTCTTCCTATATGCAGCCAGTTCGACGGTGGCCCATCA
TCGCTGCCACTATCGCAGATGAAGGTGTTAATCACCATGGAGATGACGGT
GCTGACGGGATCAGTGGAGGTAGAAAAAGTGACGTGGATATAATGCAGCC
GTCCCGGTATCGTGACCTCTGCGTCGGGGCGACGAGCGTAGCGAACGGAT
ACAACCTATCGGCCAGAGGCCGACAGATCTTACCCTCGATTACTCCAACG
TCACCATGGGTGGAGAACGTCGTCGAAGTTGAGACAAAGCTGGATGAGGC
TCCAGGCGGAATGAACGAAGATCTTCCTGGAAGAATTGCGCCCAATTGCA
ACGGCGTGGTTGGGAGTATCAGAGGAGGCAACACATCGCTTGGCATCAAC
AGTTTTGATTCCAACACCGCAGTTATCTTCGAGGACCACCTGGGGATGCT
CTAA
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